Wall clock time and date at job start Tue Mar 31 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.49716 * 2 1 4 4 C 1.53095 * 109.48248 * 239.96343 * 2 1 3 5 5 C 1.53176 * 109.16665 * 182.40982 * 4 2 1 6 6 H 1.09000 * 109.54336 * 176.84733 * 5 4 2 7 7 C 1.50701 * 109.54619 * 297.11944 * 5 4 2 8 8 O 1.21279 * 120.00023 * 85.23329 * 7 5 4 9 9 N 1.34768 * 119.99709 * 265.23942 * 7 5 4 10 10 C 1.46934 * 120.63397 * 5.38103 * 9 7 5 11 11 C 1.53191 * 108.77627 * 126.37128 * 10 9 7 12 12 C 1.53042 * 109.31560 * 54.63223 * 11 10 9 13 13 C 1.53039 * 109.53784 * 298.64094 * 12 11 10 14 14 H 1.09003 * 109.49523 * 301.40862 * 13 12 11 15 15 C 1.50707 * 109.49521 * 181.34884 * 13 12 11 16 16 H 1.07999 * 119.99849 * 275.03591 * 15 13 12 17 17 C 1.37872 * 120.00310 * 95.03772 * 15 13 12 18 18 N 1.31512 * 120.00329 * 174.98155 * 17 15 13 19 19 Si 1.86805 * 119.99846 * 354.97970 * 17 15 13 20 20 H 1.48499 * 109.47323 * 94.96260 * 19 17 15 21 21 H 1.48500 * 109.47164 * 214.96217 * 19 17 15 22 22 H 1.48500 * 109.47040 * 334.96215 * 19 17 15 23 23 C 1.46934 * 120.63081 * 185.10085 * 9 7 5 24 24 C 1.53206 * 109.03822 * 56.98507 * 5 4 2 25 25 C 1.53085 * 109.14964 * 303.02411 * 24 5 4 26 26 O 1.42905 * 109.42425 * 57.60719 * 25 24 5 27 27 H 1.09000 * 109.47283 * 299.97802 * 1 2 3 28 28 H 1.08997 * 109.46984 * 59.97335 * 1 2 3 29 29 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.52186 * 302.32114 * 4 2 1 31 31 H 1.09007 * 109.51727 * 62.44131 * 4 2 1 32 32 H 1.09003 * 109.58602 * 246.15668 * 10 9 7 33 33 H 1.08998 * 109.58614 * 6.43929 * 10 9 7 34 34 H 1.08998 * 109.49844 * 174.58527 * 11 10 9 35 35 H 1.09004 * 109.49452 * 294.65518 * 11 10 9 36 36 H 1.09005 * 109.45633 * 58.65799 * 12 11 10 37 37 H 1.08999 * 109.46018 * 178.62956 * 12 11 10 38 38 H 0.97001 * 120.00206 * 179.97438 * 18 17 15 39 39 H 1.08994 * 109.58167 * 353.41968 * 23 9 7 40 40 H 1.09000 * 109.58249 * 113.84346 * 23 9 7 41 41 H 1.09001 * 109.53566 * 183.11858 * 24 5 4 42 42 H 1.09000 * 109.52231 * 62.92146 * 24 5 4 43 43 H 1.08996 * 109.48363 * 297.61396 * 25 24 5 44 44 H 1.09002 * 109.48004 * 177.59007 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 3.5711 -0.7711 -1.2121 6 1 3.9391 -1.3330 -2.0705 7 6 4.1212 0.6313 -1.2517 8 8 4.2371 1.2665 -0.2251 9 7 4.4844 1.1797 -2.4280 10 6 4.2416 0.4700 -3.6915 11 6 3.4666 1.3948 -4.6354 12 6 4.2285 2.7129 -4.7912 13 6 4.3452 3.4007 -3.4291 14 1 3.3486 3.5798 -3.0254 15 6 5.0666 4.7142 -3.5890 16 1 6.1462 4.7419 -3.5799 17 6 4.3484 5.8804 -3.7468 18 7 4.9730 7.0370 -3.7873 19 14 2.4880 5.8177 -3.9032 20 1 1.8715 6.0351 -2.5698 21 1 2.0337 6.8788 -4.8375 22 1 2.0797 4.4893 -4.4266 23 6 5.1251 2.5012 -2.4719 24 6 4.0177 -1.4604 0.0812 25 6 3.4307 -0.7094 1.2791 26 8 2.0065 -0.6742 1.1664 27 1 -0.3634 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6442 -1.7376 -1.2708 31 1 1.7139 -0.1851 -2.1399 32 1 5.1939 0.1982 -4.1468 33 1 3.6586 -0.4305 -3.4987 34 1 3.3636 0.9168 -5.6096 35 1 2.4781 1.5924 -4.2207 36 1 5.2257 2.5118 -5.1830 37 1 3.6915 3.3634 -5.4815 38 1 4.4678 7.8575 -3.8987 39 1 5.1226 2.9417 -1.4750 40 1 6.1509 2.3983 -2.8257 41 1 5.1060 -1.4501 0.1426 42 1 3.6613 -2.4904 0.0868 43 1 3.8193 0.3088 1.2958 44 1 3.7098 -1.2202 2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:01 Heat of formation + Delta-G solvation = -95.107722 kcal Electronic energy + Delta-G solvation = -23926.860560 eV Core-core repulsion = 20650.495081 eV Total energy + Delta-G solvation = -3276.365479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72772 -38.57494 -36.83692 -33.99136 -33.15131 -32.69948 -31.80830 -30.59118 -27.94333 -25.71400 -25.14103 -24.03456 -22.40853 -21.77383 -21.19594 -19.47044 -18.32439 -17.09561 -16.73960 -16.28136 -15.92364 -15.21932 -15.12656 -14.64649 -14.31149 -13.95915 -13.79681 -13.58864 -13.10671 -12.77360 -12.67368 -12.57531 -12.54895 -12.36140 -12.13247 -12.01274 -11.90493 -11.29442 -11.13051 -11.05708 -10.84979 -10.77351 -10.48858 -10.37550 -10.08921 -9.77044 -9.69071 -9.55792 -9.12500 -8.75655 -8.57751 -8.13166 -6.13818 -4.13718 2.84892 3.24731 3.34138 3.34826 3.35556 3.88671 4.37418 4.51622 4.59594 4.71703 4.90579 4.95622 5.16012 5.18939 5.27854 5.32265 5.36190 5.47442 5.50986 5.58302 5.64093 5.68575 5.75247 5.80028 5.86180 5.95144 5.99368 6.07446 6.10266 6.15295 6.19855 6.29485 6.35081 6.55500 6.66839 6.78000 6.87887 7.22151 7.36428 7.37658 7.69331 7.81745 8.42769 8.50911 8.90697 9.49269 10.99176 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.005488 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.513123 B = 5100.960357 C = 5382.095087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.136 4.136 5 C -0.115 4.115 6 H 0.093 0.907 7 C 0.514 3.486 8 O -0.541 6.541 9 N -0.605 5.605 10 C 0.107 3.893 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.007 3.993 14 H 0.033 0.967 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.123 3.877 24 C -0.133 4.133 25 C 0.038 3.962 26 O -0.383 6.383 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -18.475 2.409 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.086 0.914 4 C -0.174 4.174 5 C -0.136 4.136 6 H 0.112 0.888 7 C 0.302 3.698 8 O -0.420 6.420 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.177 4.177 12 C -0.152 4.152 13 C -0.013 4.013 14 H 0.052 0.948 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.186 1.186 23 C 0.002 3.998 24 C -0.171 4.171 25 C -0.038 4.038 26 O -0.302 6.302 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.706 -17.999 3.054 19.127 hybrid contribution -0.715 0.158 -0.615 0.956 sum -6.421 -17.841 2.439 19.118 Atomic orbital electron populations 1.21753 0.93356 1.02447 1.02498 1.22086 0.94607 0.96151 0.84713 0.91370 1.22134 0.93171 1.02472 0.99639 1.21444 0.97122 0.94557 1.00467 0.88843 1.20512 0.77672 0.88181 0.83476 1.90536 1.55499 1.63472 1.32462 1.48452 1.59367 1.20479 1.05421 1.21761 1.00119 0.94883 0.84848 1.22025 0.99537 0.97941 0.98187 1.21880 0.98942 0.93699 1.00663 1.19367 0.96433 0.94540 0.90958 0.94846 1.20852 0.94965 0.88875 1.50458 0.90759 1.25023 0.98231 0.95290 0.94242 1.69905 1.36069 0.97741 1.49685 0.86895 0.86497 0.78058 0.78386 1.20413 1.21448 1.18572 1.21872 0.95657 0.79935 1.02354 1.21994 1.01320 0.99416 0.94375 1.23082 0.80765 1.03361 0.96566 1.87828 1.21575 1.77869 1.42922 0.91836 0.91242 0.92085 0.90177 0.90558 0.91590 0.90620 0.91822 0.92352 0.92625 0.92530 0.92582 0.89533 0.92235 0.90828 0.90898 0.88327 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.56 37.16 0.36 -1.27 16 2 C 0.08 1.13 2.99 -26.68 -0.08 1.05 16 3 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 4 C -0.14 -1.59 4.81 -26.59 -0.13 -1.72 16 5 C -0.11 -1.41 2.24 -91.57 -0.20 -1.62 16 6 H 0.09 0.95 6.21 -51.93 -0.32 0.62 16 7 C 0.51 8.42 6.11 -10.99 -0.07 8.35 16 8 O -0.54 -10.58 11.75 5.56 0.07 -10.51 16 9 N -0.61 -10.12 2.98 -173.03 -0.52 -10.64 16 10 C 0.11 1.42 6.16 -3.71 -0.02 1.40 16 11 C -0.14 -2.06 6.08 -26.61 -0.16 -2.23 16 12 C -0.11 -2.18 4.90 -26.69 -0.13 -2.32 16 13 C 0.01 0.15 1.77 -91.88 -0.16 -0.01 16 14 H 0.03 0.80 5.60 -51.93 -0.29 0.51 16 15 C -0.51 -13.91 8.87 -34.44 -0.31 -14.21 16 16 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.87 21.30 26.57 -169.99 -4.52 16.78 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -5.98 6.11 56.52 0.35 -5.63 16 23 C 0.12 2.49 5.68 -3.93 -0.02 2.47 16 24 C -0.13 -1.56 5.56 -26.58 -0.15 -1.70 16 25 C 0.04 0.52 6.54 37.20 0.24 0.77 16 26 O -0.38 -5.63 10.41 -35.23 -0.37 -5.99 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.79 5.50 -51.93 -0.29 0.51 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.16 7.18 -51.93 -0.37 0.78 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.09 1.95 7.00 -51.93 -0.36 1.58 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.62 5.12 -51.93 -0.27 1.35 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -30.94 328.13 -7.90 -38.84 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.35 Total: 1.85 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.93 Total: -9.03 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.26 Total: -36.88 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.30 Total: -16.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.52 Total: 16.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.94 -7.90 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.270 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds