Wall clock time and date at job start Tue Mar 31 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49182 * 2 1 4 4 C 1.53100 * 109.47826 * 120.02054 * 2 1 3 5 5 C 1.53180 * 109.16106 * 177.59120 * 4 2 1 6 6 H 1.09004 * 109.54051 * 62.98052 * 5 4 2 7 7 C 1.50696 * 109.54123 * 183.15615 * 5 4 2 8 8 O 1.21284 * 120.00321 * 24.44801 * 7 5 4 9 9 N 1.34780 * 120.00245 * 204.45389 * 7 5 4 10 10 C 1.46920 * 120.63697 * 174.78891 * 9 7 5 11 11 C 1.53189 * 108.77663 * 233.58715 * 10 9 7 12 12 C 1.53040 * 109.31523 * 305.36338 * 11 10 9 13 13 C 1.50695 * 109.46274 * 181.38775 * 12 11 10 14 14 H 1.07994 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99845 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99999 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00003 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46882 * 89.99933 * 17 15 13 19 19 H 1.48495 * 109.47084 * 210.00060 * 17 15 13 20 20 H 1.48494 * 109.46980 * 330.00056 * 17 15 13 21 21 C 1.53045 * 109.53780 * 61.35952 * 12 11 10 22 22 C 1.46926 * 120.62684 * 354.76423 * 9 7 5 23 23 C 1.53177 * 109.10981 * 303.06601 * 5 4 2 24 24 C 1.53106 * 109.15708 * 56.84924 * 23 5 4 25 25 O 1.42891 * 109.48282 * 239.96527 * 2 1 3 26 26 H 1.09005 * 109.47271 * 299.98005 * 1 2 3 27 27 H 1.09006 * 109.46985 * 59.97462 * 1 2 3 28 28 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.51890 * 57.68998 * 4 2 1 30 30 H 1.08993 * 109.52068 * 297.49746 * 4 2 1 31 31 H 1.08991 * 109.58890 * 113.79381 * 10 9 7 32 32 H 1.09000 * 109.69904 * 353.44025 * 10 9 7 33 33 H 1.09004 * 109.49678 * 65.31147 * 11 10 9 34 34 H 1.08996 * 109.49772 * 185.41005 * 11 10 9 35 35 H 1.09002 * 109.45333 * 301.34857 * 12 11 10 36 36 H 0.96996 * 119.99806 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.49851 * 178.68681 * 21 12 11 38 38 H 1.09001 * 109.51799 * 58.61145 * 21 12 11 39 39 H 1.09001 * 109.58620 * 246.20391 * 22 9 7 40 40 H 1.09002 * 109.58961 * 6.62704 * 22 9 7 41 41 H 1.08997 * 109.52233 * 176.84375 * 23 5 4 42 42 H 1.09004 * 109.52276 * 297.02933 * 23 5 4 43 43 H 1.08999 * 109.48248 * 182.49822 * 24 23 5 44 44 H 1.09000 * 109.41313 * 62.50999 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7708 1.2123 6 1 3.9689 0.2436 1.2425 7 6 4.0798 -1.5474 2.3993 8 8 3.3681 -2.3694 2.9365 9 7 5.3258 -1.3284 2.8641 10 6 5.7963 -1.9929 4.0871 11 6 6.3209 -0.9286 5.0560 12 6 7.3842 -0.0828 4.3515 13 6 7.9270 0.9435 5.3122 14 1 7.5510 0.9884 6.3236 15 6 8.9036 1.8251 4.8999 16 7 9.3770 2.7212 5.7381 17 14 9.5543 1.7469 3.1506 18 1 8.7384 2.6301 2.2790 19 1 10.9686 2.1988 3.1280 20 1 9.4730 0.3497 2.6543 21 6 6.7594 0.6258 3.1475 22 6 6.2398 -0.4209 2.1570 23 6 4.0194 -1.4589 -0.0806 24 6 3.4307 -0.7094 -1.2789 25 8 2.0065 -0.6743 -1.1662 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6442 -1.7373 1.2712 30 1 1.7147 -0.1841 2.1399 31 1 6.5978 -2.6887 3.8397 32 1 4.9722 -2.5349 4.5510 33 1 5.4979 -0.2880 5.3731 34 1 6.7607 -1.4145 5.9268 35 1 8.1951 -0.7276 4.0128 36 1 10.0637 3.3416 5.4479 37 1 7.5114 1.2462 2.6600 38 1 5.9325 1.2521 3.4822 39 1 7.0776 -0.9886 1.7522 40 1 5.7067 0.0760 1.3464 41 1 5.1077 -1.4473 -0.1409 42 1 3.6644 -2.4895 -0.0868 43 1 3.7099 -1.2205 -2.2002 44 1 3.8192 0.3088 -1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:43 Heat of formation + Delta-G solvation = -96.040516 kcal Electronic energy + Delta-G solvation = -23394.363221 eV Core-core repulsion = 20117.957293 eV Total energy + Delta-G solvation = -3276.405928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56316 -38.98025 -37.11366 -34.01969 -33.46772 -32.93846 -31.47790 -30.61926 -28.13110 -26.70162 -25.00561 -23.16454 -22.73128 -22.34418 -20.83303 -19.69349 -18.49845 -17.18312 -16.71959 -16.48964 -16.19813 -15.52862 -15.18557 -14.70241 -14.63256 -14.19701 -13.91729 -13.52693 -13.29974 -13.07303 -12.75744 -12.65614 -12.53162 -12.47486 -12.18399 -12.06155 -11.88780 -11.43478 -11.30866 -11.08331 -10.90614 -10.81607 -10.58597 -10.24904 -10.19148 -9.89290 -9.81076 -9.45343 -9.29187 -9.11909 -8.62444 -8.24233 -6.14731 -4.14288 2.76321 3.14872 3.20253 3.26591 3.31983 3.57195 4.31463 4.43480 4.50001 4.59211 4.72094 4.94132 4.97864 5.09663 5.18932 5.20606 5.24835 5.36241 5.43350 5.46760 5.55761 5.58015 5.61386 5.69296 5.75561 5.77695 5.82530 5.91791 5.96545 5.97596 6.12768 6.16456 6.24496 6.56602 6.58233 6.69972 6.84387 7.04233 7.12111 7.41628 7.65118 7.69565 8.35923 8.44774 8.89744 9.46949 10.98711 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004631 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.103354 B = 6044.299473 C = 6516.587259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.059 0.941 4 C -0.130 4.130 5 C -0.112 4.112 6 H 0.095 0.905 7 C 0.520 3.480 8 O -0.551 6.551 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.113 4.113 12 C 0.015 3.985 13 C -0.514 4.514 14 H 0.074 0.926 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.136 4.136 22 C 0.099 3.901 23 C -0.146 4.146 24 C 0.065 3.935 25 O -0.380 6.380 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -5.671 -13.771 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.077 0.923 4 C -0.168 4.168 5 C -0.133 4.133 6 H 0.113 0.887 7 C 0.308 3.692 8 O -0.429 6.429 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.151 4.151 12 C -0.004 4.004 13 C -0.552 4.552 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.174 4.174 22 C -0.023 4.023 23 C -0.184 4.184 24 C -0.012 4.012 25 O -0.300 6.300 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.173 -6.044 -13.573 19.207 hybrid contribution 0.918 0.409 -0.637 1.190 sum -11.254 -5.635 -14.210 18.982 Atomic orbital electron populations 1.21752 0.92879 1.03060 1.02407 1.22128 0.95238 0.94940 0.84856 0.92319 1.22081 0.93147 1.03211 0.98397 1.21398 0.97499 1.00506 0.93925 0.88695 1.20414 0.81144 0.82925 0.84742 1.90645 1.56590 1.35423 1.60256 1.48151 1.13010 1.45393 1.26706 1.21764 0.99183 0.95489 0.84918 1.21827 0.99277 0.96634 0.97366 1.19124 0.93335 0.95051 0.92884 1.21046 1.20660 1.14721 0.98756 0.90830 1.25050 0.96018 0.95016 0.97225 1.69897 1.29036 1.19561 1.35310 0.86870 0.77326 0.78716 0.85485 1.20556 1.22398 1.19006 1.22391 1.00528 0.97153 0.97356 1.21990 0.92828 0.92175 0.95326 1.22178 1.01618 1.01037 0.93536 1.22539 0.81102 0.99626 0.97902 1.87919 1.20848 1.78079 1.43107 0.90950 0.91875 0.91702 0.89724 0.90510 0.92065 0.89911 0.92330 0.91283 0.95386 0.92617 0.92376 0.91612 0.91662 0.90665 0.90202 0.90303 0.88503 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.56 37.15 0.36 -0.90 16 2 C 0.09 0.89 3.26 -26.68 -0.09 0.80 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.55 4.29 -26.59 -0.11 -1.67 16 5 C -0.11 -1.40 1.74 -91.59 -0.16 -1.56 16 6 H 0.09 1.11 6.52 -51.93 -0.34 0.77 16 7 C 0.52 8.32 6.81 -10.99 -0.07 8.25 16 8 O -0.55 -10.42 15.47 5.55 0.09 -10.33 16 9 N -0.60 -9.78 2.97 -172.78 -0.51 -10.30 16 10 C 0.11 1.83 6.41 -3.72 -0.02 1.81 16 11 C -0.11 -2.16 5.30 -26.61 -0.14 -2.30 16 12 C 0.02 0.33 1.66 -91.73 -0.15 0.18 16 13 C -0.51 -13.83 9.14 -34.44 -0.31 -14.14 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 16 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 17 Si 0.89 20.68 24.38 -169.99 -4.14 16.54 16 18 H -0.28 -6.23 6.86 56.52 0.39 -5.85 16 19 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.27 -5.81 6.53 56.52 0.37 -5.44 16 21 C -0.14 -2.66 4.85 -26.61 -0.13 -2.78 16 22 C 0.10 1.54 5.86 -3.71 -0.02 1.52 16 23 C -0.15 -1.56 5.24 -26.58 -0.14 -1.70 16 24 C 0.07 0.62 6.84 37.21 0.25 0.87 16 25 O -0.38 -4.33 10.41 -35.23 -0.37 -4.69 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.41 7.05 -51.93 -0.37 1.04 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 1.19 3.25 -51.93 -0.17 1.03 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.96 5.04 -51.93 -0.26 0.70 16 41 H 0.08 0.78 7.30 -51.93 -0.38 0.40 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -31.05 330.37 -7.42 -38.47 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.39 Total: 1.23 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.84 Total: -9.82 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.26 Total: -36.36 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.28 Total: -15.03 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.05 -7.42 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds