Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47793 * 2 1 4 4 C 1.53102 * 109.49190 * 240.06172 * 2 1 3 5 5 C 1.53178 * 109.15373 * 182.49141 * 4 2 1 6 6 H 1.08997 * 109.54744 * 296.93214 * 5 4 2 7 7 C 1.50703 * 109.54160 * 176.75884 * 5 4 2 8 8 O 1.21284 * 120.00268 * 338.30280 * 7 5 4 9 9 N 1.34778 * 119.99991 * 158.02483 * 7 5 4 10 10 C 1.46931 * 120.63123 * 355.60518 * 9 7 5 11 11 C 1.52756 * 109.00721 * 233.58238 * 10 9 7 12 12 C 1.53036 * 109.38610 * 305.58740 * 11 10 9 13 13 C 1.50698 * 109.46690 * 181.26221 * 12 11 10 14 14 H 1.07998 * 120.00390 * 239.93653 * 13 12 11 15 15 C 1.37879 * 119.99716 * 59.92399 * 13 12 11 16 16 N 1.31510 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99809 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 90.00446 * 17 15 13 19 19 H 1.48501 * 109.46892 * 209.99992 * 17 15 13 20 20 H 1.48493 * 109.47232 * 330.00414 * 17 15 13 21 21 C 1.53041 * 109.54017 * 61.23834 * 12 11 10 22 22 C 1.46928 * 120.63245 * 175.87960 * 9 7 5 23 23 C 1.53183 * 109.11161 * 56.85074 * 5 4 2 24 24 C 1.53093 * 109.15986 * 303.06401 * 23 5 4 25 25 O 1.42903 * 109.47747 * 120.02742 * 2 1 3 26 26 H 1.08990 * 109.47498 * 299.97482 * 1 2 3 27 27 H 1.08999 * 109.46854 * 59.97715 * 1 2 3 28 28 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.59634 * 62.54958 * 4 2 1 30 30 H 1.08995 * 109.45372 * 302.35002 * 4 2 1 31 31 H 1.09004 * 109.58178 * 353.41171 * 10 9 7 32 32 H 1.08997 * 109.58711 * 113.84006 * 10 9 7 33 33 H 1.08997 * 109.56576 * 185.54672 * 11 10 9 34 34 H 1.09008 * 109.38840 * 65.51389 * 11 10 9 35 35 H 1.09005 * 109.44587 * 301.23064 * 12 11 10 36 36 H 0.96995 * 120.00270 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.49858 * 178.68981 * 21 12 11 38 38 H 1.08998 * 109.49785 * 58.59166 * 21 12 11 39 39 H 1.09004 * 109.58703 * 246.15885 * 22 9 7 40 40 H 1.08999 * 109.58298 * 6.58570 * 22 9 7 41 41 H 1.08997 * 109.52208 * 62.96687 * 23 5 4 42 42 H 1.08995 * 109.52459 * 183.15790 * 23 5 4 43 43 H 1.09000 * 109.48053 * 177.59079 * 24 23 5 44 44 H 1.09005 * 109.48012 * 297.62595 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7203 -1.2507 5 6 3.5713 -0.7705 -1.2119 6 1 3.9704 0.2434 -1.2413 7 6 4.0805 -1.5472 -2.3987 8 8 3.3517 -2.3320 -2.9678 9 7 5.3440 -1.3655 -2.8313 10 6 6.2059 -0.3458 -2.2179 11 6 6.7572 0.5644 -3.3139 12 6 7.4508 -0.2868 -4.3799 13 6 8.0223 0.6115 -5.4463 14 1 7.6952 0.5098 -6.4705 15 6 8.9628 1.5636 -5.1144 16 7 9.3615 1.6873 -3.8673 17 14 9.6708 2.6777 -6.4362 18 1 8.8365 3.9007 -6.5518 19 1 11.0591 3.0582 -6.0714 20 1 9.6796 1.9598 -7.7361 21 6 6.4368 -1.2446 -5.0097 22 6 5.8837 -2.1792 -3.9292 23 6 4.0179 -1.4597 0.0812 24 6 3.4306 -0.7090 1.2793 25 8 2.0065 -0.6742 1.1664 26 1 -0.3634 0.5134 0.8901 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7166 -0.1814 -2.1410 30 1 1.6436 -1.7350 -1.2729 31 1 5.6249 0.2465 -1.5110 32 1 7.0328 -0.8304 -1.6990 33 1 7.4745 1.2623 -2.8822 34 1 5.9374 1.1203 -3.7690 35 1 8.2549 -0.8609 -3.9193 36 1 10.0234 2.3568 -3.6338 37 1 6.9262 -1.8343 -5.7849 38 1 5.6197 -0.6722 -5.4487 39 1 6.6839 -2.8164 -3.5526 40 1 5.0903 -2.7961 -4.3509 41 1 3.6617 -2.4898 0.0867 42 1 5.1061 -1.4492 0.1426 43 1 3.7099 -1.2200 2.2008 44 1 3.8190 0.3093 1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = -104.538842 kcal Electronic energy + Delta-G solvation = -23246.410308 eV Core-core repulsion = 19969.635865 eV Total energy + Delta-G solvation = -3276.774443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39911 -38.82800 -36.82892 -33.89396 -33.42294 -32.86320 -31.14716 -30.13364 -28.02336 -26.44184 -24.85267 -23.15172 -22.53947 -22.19125 -20.71649 -19.56085 -18.25554 -17.06866 -16.43730 -16.17766 -16.06366 -15.34571 -15.00723 -14.64149 -14.47706 -14.10751 -13.65015 -13.18653 -13.15439 -12.75660 -12.74535 -12.65450 -12.43570 -12.24967 -12.00430 -11.66911 -11.39482 -11.28619 -11.17136 -10.97330 -10.79965 -10.67621 -10.54248 -10.36585 -10.14164 -9.80759 -9.66542 -9.23995 -9.20591 -8.93567 -8.42301 -8.03543 -6.07456 -4.13486 2.92842 3.25330 3.32609 3.36078 3.40887 3.65636 4.37489 4.59082 4.61136 4.71058 4.82108 5.05125 5.07080 5.21486 5.27714 5.32593 5.35368 5.52293 5.53141 5.62412 5.71956 5.74593 5.80803 5.87205 5.92281 5.99820 6.03144 6.06364 6.12284 6.25451 6.28742 6.41990 6.61722 6.86074 6.99642 7.10112 7.12343 7.22599 7.61852 7.86938 7.90059 7.99140 8.35902 8.53903 8.89928 9.51889 10.98131 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.004024 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.866924 B = 6956.500004 C = 7282.293117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.130 4.130 5 C -0.111 4.111 6 H 0.096 0.904 7 C 0.517 3.483 8 O -0.557 6.557 9 N -0.599 5.599 10 C 0.102 3.898 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.111 3.889 23 C -0.144 4.144 24 C 0.065 3.935 25 O -0.381 6.381 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 -2.680 9.819 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.168 4.168 5 C -0.132 4.132 6 H 0.114 0.886 7 C 0.305 3.695 8 O -0.437 6.437 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.161 4.161 22 C -0.011 4.011 23 C -0.182 4.182 24 C -0.011 4.011 25 O -0.301 6.301 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.391 -3.071 9.750 15.305 hybrid contribution 0.877 0.888 -0.969 1.580 sum -10.515 -2.183 8.781 13.872 Atomic orbital electron populations 1.21748 0.92984 1.03013 1.02325 1.22124 0.95141 0.94957 0.84942 0.92368 1.22073 0.93415 1.03096 0.98224 1.21387 0.97225 1.00641 0.93971 0.88645 1.20407 0.81500 0.82849 0.84776 1.90628 1.56007 1.38475 1.58563 1.48255 1.12441 1.36994 1.35358 1.22011 0.93087 0.89836 0.97056 1.21956 0.99627 0.98714 0.96080 1.18629 0.92069 0.92619 0.93640 1.21210 1.22326 1.17183 0.94311 0.92701 1.24952 0.96312 0.97279 0.95368 1.69825 1.31620 1.34916 1.16777 0.86614 0.78343 0.80988 0.82189 1.20730 1.21221 1.19946 1.22004 0.99648 0.97882 0.96594 1.21701 0.97922 0.93619 0.87907 1.22133 1.01761 1.00816 0.93455 1.22546 0.80989 0.99670 0.97945 1.87912 1.20976 1.78104 1.43074 0.91921 0.91013 0.91739 0.90604 0.89860 0.91400 0.91944 0.87681 0.94321 0.95450 0.92965 0.92156 0.92993 0.92235 0.90391 0.90492 0.90092 0.88551 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.97 16 2 C 0.09 0.94 3.26 -26.68 -0.09 0.86 16 3 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.66 4.26 -26.59 -0.11 -1.77 16 5 C -0.11 -1.50 1.77 -91.58 -0.16 -1.66 16 6 H 0.10 1.22 6.22 -51.93 -0.32 0.90 16 7 C 0.52 8.93 6.84 -10.98 -0.08 8.85 16 8 O -0.56 -11.24 15.41 5.55 0.09 -11.16 16 9 N -0.60 -10.60 2.98 -173.02 -0.52 -11.11 16 10 C 0.10 1.76 5.96 -3.93 -0.02 1.74 16 11 C -0.13 -2.69 5.14 -26.84 -0.14 -2.83 16 12 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 13 C -0.51 -13.51 8.56 -34.44 -0.29 -13.80 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.06 11.31 55.43 0.63 -23.43 16 17 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 22 C 0.11 2.03 6.44 -3.71 -0.02 2.00 16 23 C -0.14 -1.68 5.38 -26.59 -0.14 -1.82 16 24 C 0.07 0.67 6.84 37.21 0.25 0.92 16 25 O -0.38 -4.60 10.41 -35.23 -0.37 -4.96 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.19 7.78 -51.93 -0.40 0.78 16 31 H 0.07 0.99 5.42 -51.93 -0.28 0.71 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.51 6.03 -51.93 -0.31 2.20 16 34 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.89 7.83 -51.93 -0.41 0.49 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -29.13 337.98 -8.53 -37.65 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.55 Total: 0.96 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.88 Total: -8.65 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.11 Total: -34.54 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.28 Total: -16.12 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.13 -8.53 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.884 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds