Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.48122 * 2 1 4 4 C 1.53091 * 109.48308 * 120.02911 * 2 1 3 5 5 C 1.53180 * 109.16649 * 177.58997 * 4 2 1 6 6 H 1.08993 * 109.54472 * 183.15152 * 5 4 2 7 7 C 1.50703 * 109.61224 * 62.93136 * 5 4 2 8 8 O 1.21283 * 120.00150 * 325.65132 * 7 5 4 9 9 N 1.34771 * 119.99697 * 145.64509 * 7 5 4 10 10 C 1.46923 * 120.63197 * 5.11585 * 9 7 5 11 11 C 1.53625 * 108.54652 * 126.36615 * 10 9 7 12 12 C 1.53038 * 109.24374 * 54.85323 * 11 10 9 13 13 C 1.50700 * 109.45931 * 178.49259 * 12 11 10 14 14 H 1.08007 * 120.00046 * 120.07115 * 13 12 11 15 15 C 1.37871 * 120.00341 * 300.06735 * 13 12 11 16 16 N 1.31512 * 120.00128 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00222 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46946 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46575 * 120.00109 * 17 15 13 20 20 H 1.48493 * 109.47052 * 240.00117 * 17 15 13 21 21 C 1.53035 * 109.53874 * 298.51360 * 12 11 10 22 22 C 1.46925 * 120.63053 * 185.38608 * 9 7 5 23 23 C 1.53178 * 109.03656 * 303.02560 * 5 4 2 24 24 C 1.53091 * 109.16618 * 56.97701 * 23 5 4 25 25 O 1.42903 * 109.48349 * 239.97320 * 2 1 3 26 26 H 1.09008 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47269 * 300.02395 * 1 2 3 28 28 H 1.08996 * 109.47026 * 60.02610 * 1 2 3 29 29 H 1.09007 * 109.51890 * 57.68922 * 4 2 1 30 30 H 1.08995 * 109.52488 * 297.50275 * 4 2 1 31 31 H 1.09000 * 109.58608 * 246.19452 * 10 9 7 32 32 H 1.09003 * 109.58968 * 6.62332 * 10 9 7 33 33 H 1.09005 * 109.62958 * 294.86138 * 11 10 9 34 34 H 1.08994 * 109.43502 * 174.72984 * 11 10 9 35 35 H 1.08998 * 109.45698 * 58.53349 * 12 11 10 36 36 H 0.96998 * 120.00518 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.50074 * 301.41497 * 21 12 11 38 38 H 1.08997 * 109.49924 * 181.31425 * 21 12 11 39 39 H 1.09002 * 109.58922 * 353.38192 * 22 9 7 40 40 H 1.09003 * 109.58506 * 113.80588 * 22 9 7 41 41 H 1.08998 * 109.52480 * 176.88352 * 23 5 4 42 42 H 1.08999 * 109.51982 * 297.00953 * 23 5 4 43 43 H 1.09005 * 109.48156 * 62.36970 * 24 23 5 44 44 H 1.08998 * 109.48324 * 182.40019 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5712 -0.7709 1.2121 6 1 3.9392 -1.3327 2.0706 7 6 4.1230 0.6309 1.2528 8 8 3.5246 1.5342 0.7079 9 7 5.2813 0.8807 1.8947 10 6 6.0742 -0.2180 2.4631 11 6 7.5078 -0.1178 1.9200 12 6 8.0634 1.2769 2.2170 13 6 9.4828 1.3684 1.7191 14 1 9.7473 2.1041 0.9739 15 6 10.4438 0.5131 2.2149 16 7 10.1217 -0.3830 3.1220 17 14 12.2031 0.6261 1.5972 18 1 12.3039 1.7083 0.5852 19 1 13.1088 0.9270 2.7350 20 1 12.5953 -0.6667 0.9808 21 6 7.2065 2.3302 1.5111 22 6 5.7724 2.2573 2.0446 23 6 4.0177 -1.4600 -0.0810 24 6 3.4308 -0.7092 -1.2791 25 8 2.0066 -0.6741 -1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5142 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 1.6443 -1.7375 1.2708 30 1 1.7149 -0.1844 2.1398 31 1 6.0858 -0.1360 3.5499 32 1 5.6374 -1.1730 2.1712 33 1 7.5040 -0.2861 0.8430 34 1 8.1322 -0.8688 2.4038 35 1 8.0438 1.4541 3.2924 36 1 10.7977 -0.9850 3.4706 37 1 7.2056 2.1388 0.4379 38 1 7.6165 3.3216 1.7040 39 1 5.1362 2.9361 1.4766 40 1 5.7598 2.5370 3.0981 41 1 5.1059 -1.4497 -0.1422 42 1 3.6623 -2.4904 -0.0860 43 1 3.8192 0.3091 -1.2958 44 1 3.7101 -1.2200 -2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -97.024461 kcal Electronic energy + Delta-G solvation = -23662.082878 eV Core-core repulsion = 20385.634283 eV Total energy + Delta-G solvation = -3276.448595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66374 -38.46782 -36.67781 -33.88949 -33.39230 -32.66542 -31.17035 -30.08881 -27.88305 -26.40243 -24.65698 -23.21516 -22.50919 -22.07258 -21.00577 -19.56483 -18.06209 -16.98847 -16.26121 -16.21203 -15.83443 -15.30024 -15.03062 -14.60175 -14.47865 -13.73181 -13.55723 -13.33371 -12.96844 -12.81337 -12.64459 -12.41013 -12.38353 -12.13354 -11.97775 -11.82068 -11.55929 -11.35757 -11.01152 -10.97468 -10.72642 -10.66171 -10.44039 -10.39870 -10.14680 -9.66925 -9.55903 -9.22247 -9.01422 -8.72345 -8.43168 -8.05603 -6.08209 -4.14325 2.87615 3.23884 3.32712 3.36680 3.40142 3.92569 4.36968 4.62361 4.74001 4.77921 4.99076 5.08156 5.21636 5.37143 5.42628 5.50908 5.59660 5.63605 5.66156 5.72972 5.74981 5.84021 5.88519 5.93103 6.00524 6.02871 6.07628 6.09337 6.17843 6.23386 6.34696 6.43250 6.61017 6.84701 6.97858 7.09041 7.21703 7.41620 7.61456 7.85769 7.87521 7.98330 8.34897 8.50846 8.89377 9.51267 10.97325 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033108 B = 0.004164 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.511358 B = 6723.377120 C = 6915.186953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.106 0.894 4 C -0.127 4.127 5 C -0.114 4.114 6 H 0.096 0.904 7 C 0.516 3.484 8 O -0.554 6.554 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.122 4.122 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.123 4.123 22 C 0.110 3.890 23 C -0.143 4.143 24 C 0.061 3.939 25 O -0.384 6.384 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 -2.679 -2.334 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.123 0.877 4 C -0.165 4.165 5 C -0.135 4.135 6 H 0.114 0.886 7 C 0.305 3.695 8 O -0.435 6.435 9 N -0.328 5.328 10 C -0.023 4.023 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.161 4.161 22 C -0.012 4.012 23 C -0.181 4.181 24 C -0.016 4.016 25 O -0.303 6.303 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.260 -2.421 -2.629 14.701 hybrid contribution 1.423 -0.103 0.102 1.430 sum -12.837 -2.524 -2.526 13.325 Atomic orbital electron populations 1.21756 0.94075 1.02053 1.02051 1.22675 0.94050 0.98707 0.84008 0.87655 1.22028 0.93124 1.01735 0.99648 1.21416 0.97061 0.94487 1.00523 0.88611 1.20521 0.80602 0.90481 0.77925 1.90487 1.59355 1.47347 1.46263 1.48296 1.21122 1.08825 1.54567 1.22218 0.94166 0.87935 0.97973 1.22091 0.91260 1.03434 0.99276 1.18639 0.93101 0.89565 0.95733 1.21242 0.93170 1.17404 1.23148 0.92647 1.24955 0.98775 0.95327 0.94884 1.69836 1.33590 1.20534 1.29146 0.86564 0.84939 0.77931 0.78748 1.19820 1.21031 1.21031 1.21998 0.92912 1.00943 1.00229 1.21711 0.96736 0.82217 1.00522 1.22106 1.01948 1.00070 0.94004 1.22526 0.81335 1.00285 0.97416 1.87821 1.20724 1.78264 1.43518 0.92560 0.91489 0.92163 0.90835 0.91025 0.91929 0.91237 0.94235 0.87741 0.95478 0.93012 0.92982 0.92176 0.90320 0.92237 0.90089 0.90151 0.92327 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.56 37.16 0.36 -1.21 16 2 C 0.06 0.86 2.96 -26.68 -0.08 0.78 16 3 H 0.11 1.71 5.13 -51.93 -0.27 1.44 16 4 C -0.13 -1.57 4.84 -26.59 -0.13 -1.70 16 5 C -0.11 -1.52 2.24 -91.58 -0.20 -1.72 16 6 H 0.10 1.16 6.19 -51.93 -0.32 0.84 16 7 C 0.52 8.50 6.11 -10.99 -0.07 8.43 16 8 O -0.55 -10.24 11.76 5.55 0.07 -10.18 16 9 N -0.60 -10.27 2.97 -172.50 -0.51 -10.78 16 10 C 0.10 1.69 6.18 -3.49 -0.02 1.67 16 11 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 12 C 0.05 1.11 2.06 -91.73 -0.19 0.93 16 13 C -0.51 -13.38 8.56 -34.44 -0.29 -13.68 16 14 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -23.97 11.30 55.43 0.63 -23.34 16 17 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 22 C 0.11 1.96 6.44 -3.71 -0.02 1.94 16 23 C -0.14 -1.83 5.54 -26.59 -0.15 -1.97 16 24 C 0.06 0.85 6.56 37.20 0.24 1.09 16 25 O -0.38 -5.67 10.41 -35.23 -0.37 -6.03 16 26 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.01 5.51 -51.93 -0.29 0.73 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.07 8.11 -51.93 -0.42 0.64 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.93 6.66 -51.93 -0.35 0.59 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -28.05 330.65 -8.51 -36.56 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.35 Total: 2.52 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.93 Total: -9.26 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.11 Total: -34.12 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.30 Total: -16.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.05 -8.51 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.466 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds