Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47719 * 2 1 4 4 C 1.53096 * 109.48103 * 239.97805 * 2 1 3 5 5 C 1.53173 * 109.16106 * 182.40637 * 4 2 1 6 6 H 1.09002 * 109.53777 * 176.84376 * 5 4 2 7 7 C 1.50700 * 109.54498 * 297.02343 * 5 4 2 8 8 O 1.21282 * 120.00056 * 85.25065 * 7 5 4 9 9 N 1.34773 * 119.99626 * 265.24847 * 7 5 4 10 10 C 1.46928 * 120.63587 * 5.11464 * 9 7 5 11 11 C 1.53621 * 108.54624 * 126.36379 * 10 9 7 12 12 C 1.53037 * 109.24199 * 54.85676 * 11 10 9 13 13 C 1.50705 * 109.46165 * 178.48941 * 12 11 10 14 14 H 1.08000 * 119.99745 * 120.06554 * 13 12 11 15 15 C 1.37877 * 119.99677 * 300.07024 * 13 12 11 16 16 N 1.31509 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99401 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47195 * 90.00214 * 17 15 13 19 19 H 1.48501 * 109.46745 * 209.99850 * 17 15 13 20 20 H 1.48497 * 109.47497 * 329.99816 * 17 15 13 21 21 C 1.53042 * 109.53827 * 298.50907 * 12 11 10 22 22 C 1.46930 * 120.62687 * 185.38742 * 9 7 5 23 23 C 1.53175 * 109.03758 * 56.98142 * 5 4 2 24 24 C 1.53097 * 109.16245 * 303.01732 * 23 5 4 25 25 O 1.42901 * 109.42618 * 57.60324 * 24 23 5 26 26 H 1.09001 * 109.46671 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47110 * 299.99749 * 1 2 3 28 28 H 1.08996 * 109.47296 * 60.00021 * 1 2 3 29 29 H 1.09003 * 109.52023 * 302.31188 * 4 2 1 30 30 H 1.08996 * 109.51706 * 62.49849 * 4 2 1 31 31 H 1.09003 * 109.58007 * 246.20035 * 10 9 7 32 32 H 1.09002 * 109.58319 * 6.61739 * 10 9 7 33 33 H 1.08994 * 109.63461 * 294.86617 * 11 10 9 34 34 H 1.09000 * 109.45742 * 174.74311 * 11 10 9 35 35 H 1.09003 * 109.46074 * 58.53410 * 12 11 10 36 36 H 0.97003 * 119.99603 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.50052 * 301.41487 * 21 12 11 38 38 H 1.09007 * 109.52185 * 181.33256 * 21 12 11 39 39 H 1.08997 * 109.58750 * 353.37289 * 22 9 7 40 40 H 1.09004 * 109.58683 * 113.80510 * 22 9 7 41 41 H 1.09002 * 109.52580 * 62.92370 * 23 5 4 42 42 H 1.09003 * 109.52259 * 183.11152 * 23 5 4 43 43 H 1.08997 * 109.47843 * 177.59253 * 24 23 5 44 44 H 1.08993 * 109.47735 * 297.61129 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5711 -0.7707 -1.2122 6 1 3.9391 -1.3324 -2.0708 7 6 4.1212 0.6317 -1.2539 8 8 4.2373 1.2683 -0.2282 9 7 4.4841 1.1784 -2.4311 10 6 4.2464 0.4645 -3.6931 11 6 3.4669 1.3906 -4.6390 12 6 4.2294 2.7081 -4.7967 13 6 3.4877 3.6061 -5.7530 14 1 3.1348 4.5721 -5.4231 15 6 3.2597 3.1945 -7.0490 16 7 3.6899 2.0185 -7.4508 17 14 2.3397 4.3075 -8.2341 18 1 3.3074 5.1811 -8.9451 19 1 1.6034 3.4780 -9.2216 20 1 1.3770 5.1480 -7.4778 21 6 4.3459 3.3980 -3.4356 22 6 5.1303 2.4972 -2.4764 23 6 4.0177 -1.4600 0.0807 24 6 3.4307 -0.7093 1.2790 25 8 2.0066 -0.6740 1.1665 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6443 -1.7374 -1.2711 30 1 1.7148 -0.1841 -2.1398 31 1 5.2007 0.1948 -4.1455 32 1 3.6640 -0.4362 -3.4992 33 1 2.4787 1.5896 -4.2247 34 1 3.3635 0.9113 -5.6126 35 1 5.2266 2.5060 -5.1879 36 1 3.5297 1.7292 -8.3627 37 1 3.3493 3.5781 -3.0325 38 1 4.8683 4.3476 -3.5521 39 1 5.1312 2.9381 -1.4796 40 1 6.1552 2.3899 -2.8318 41 1 3.6614 -2.4901 0.0861 42 1 5.1059 -1.4497 0.1419 43 1 3.7100 -1.2204 2.2003 44 1 3.8194 0.3088 1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -96.988509 kcal Electronic energy + Delta-G solvation = -23759.912562 eV Core-core repulsion = 20483.465526 eV Total energy + Delta-G solvation = -3276.447036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66085 -38.46343 -36.69900 -33.87943 -33.38486 -32.63343 -31.21519 -30.09325 -27.85697 -26.35065 -24.63813 -23.19792 -22.65887 -21.96504 -21.03220 -19.55114 -18.06105 -17.00454 -16.27664 -16.21036 -15.80418 -15.23046 -15.06160 -14.60282 -14.50797 -13.78967 -13.54550 -13.25662 -12.93162 -12.80642 -12.66792 -12.46388 -12.28373 -12.13460 -11.94882 -11.83348 -11.56942 -11.35050 -11.00759 -10.98210 -10.73451 -10.67787 -10.44484 -10.38363 -10.14118 -9.66491 -9.53439 -9.22085 -9.02372 -8.73975 -8.42515 -8.05520 -6.07975 -4.14091 2.87883 3.25080 3.32378 3.35791 3.40302 3.93096 4.37069 4.62629 4.69275 4.81081 4.98399 5.09799 5.22088 5.34320 5.41460 5.50585 5.61339 5.65543 5.69814 5.72607 5.76135 5.83885 5.90535 5.92491 6.01339 6.05972 6.08953 6.13020 6.19472 6.24289 6.31467 6.41986 6.61092 6.84855 6.98025 7.09306 7.21869 7.41410 7.61431 7.86015 7.87696 7.98442 8.35084 8.51079 8.89337 9.51399 10.97578 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004582 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.189878 B = 6109.265267 C = 6483.575356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.066 0.934 4 C -0.137 4.137 5 C -0.114 4.114 6 H 0.096 0.904 7 C 0.516 3.484 8 O -0.554 6.554 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.122 4.122 12 C 0.048 3.952 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.110 3.890 23 C -0.133 4.133 24 C 0.040 3.960 25 O -0.384 6.384 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -7.602 11.135 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.084 0.916 4 C -0.175 4.175 5 C -0.135 4.135 6 H 0.114 0.886 7 C 0.305 3.695 8 O -0.435 6.435 9 N -0.328 5.328 10 C -0.023 4.023 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.161 4.161 22 C -0.012 4.012 23 C -0.171 4.171 24 C -0.036 4.036 25 O -0.303 6.303 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.925 -7.452 11.613 13.830 hybrid contribution -0.220 0.537 -1.211 1.343 sum -1.145 -6.915 10.402 12.543 Atomic orbital electron populations 1.21762 0.93338 1.02538 1.02447 1.22073 0.94592 0.95964 0.84696 0.91567 1.22142 0.93053 1.02607 0.99710 1.21411 0.97257 0.94383 1.00442 0.88610 1.20522 0.77472 0.88302 0.83229 1.90491 1.56562 1.63630 1.32794 1.48301 1.58603 1.19510 1.06402 1.22217 1.00624 0.95529 0.83916 1.22087 0.97090 0.97783 0.99098 1.18637 0.96332 0.92035 0.90008 1.21201 1.35989 1.02440 0.95392 0.92705 1.24950 0.95683 0.95139 0.98122 1.69829 1.46686 1.19026 1.17581 0.86619 0.79989 0.80667 0.80893 1.20692 1.21228 1.19963 1.22000 0.98980 0.97786 0.97319 1.21712 0.95762 0.82833 1.00882 1.21994 1.01179 0.99531 0.94428 1.23050 0.80865 1.03141 0.96539 1.87823 1.21490 1.77978 1.43015 0.92064 0.91985 0.91062 0.90159 0.90134 0.91930 0.91246 0.94231 0.87736 0.95488 0.92954 0.92981 0.92181 0.90328 0.92233 0.90845 0.90972 0.90067 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.56 37.16 0.36 -1.33 16 2 C 0.08 1.19 2.98 -26.68 -0.08 1.11 16 3 H 0.07 1.09 6.66 -51.93 -0.35 0.74 16 4 C -0.14 -1.78 4.82 -26.59 -0.13 -1.91 16 5 C -0.11 -1.53 2.24 -91.59 -0.20 -1.73 16 6 H 0.10 1.16 6.19 -51.93 -0.32 0.84 16 7 C 0.52 8.53 6.11 -10.99 -0.07 8.46 16 8 O -0.55 -10.27 11.76 5.56 0.07 -10.21 16 9 N -0.60 -10.30 2.97 -172.50 -0.51 -10.81 16 10 C 0.10 1.69 6.18 -3.49 -0.02 1.67 16 11 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 12 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 13 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -23.97 11.31 55.43 0.63 -23.35 16 17 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 22 C 0.11 1.96 6.44 -3.71 -0.02 1.94 16 23 C -0.13 -1.63 5.56 -26.59 -0.15 -1.78 16 24 C 0.04 0.55 6.54 37.21 0.24 0.79 16 25 O -0.38 -5.69 10.41 -35.23 -0.37 -6.05 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.02 5.51 -51.93 -0.29 0.73 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 39 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.53 5.13 -51.93 -0.27 1.27 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -28.02 330.65 -8.51 -36.53 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.35 Total: 2.71 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.93 Total: -9.32 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.12 Total: -34.15 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.30 Total: -16.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.02 -8.51 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.461 kcal (2) G-P(sol) polarization free energy of solvation -28.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds