Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 C 1.52997 * 109.47217 * 240.00062 * 2 1 3 5 5 O 1.45192 * 109.47066 * 120.00099 * 2 1 3 6 6 C 1.34635 * 117.00117 * 59.99723 * 5 2 1 7 7 O 1.21512 * 120.00148 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00279 * 180.02562 * 6 5 2 9 9 C 1.47128 * 121.53297 * 0.23334 * 8 6 5 10 10 C 1.50323 * 109.10492 * 223.15874 * 9 8 6 11 11 C 1.29453 * 123.64941 * 348.53758 * 10 9 8 12 12 C 1.50700 * 117.69659 * 181.13826 * 11 10 9 13 13 C 1.53009 * 109.47020 * 95.00077 * 12 11 10 14 14 C 1.50692 * 109.47009 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00325 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99893 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00181 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47011 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47120 * 119.99855 * 18 16 14 21 21 H 1.48495 * 109.46835 * 239.99861 * 18 16 14 22 22 C 1.49974 * 124.61408 * 1.12056 * 11 10 9 23 23 C 1.47338 * 121.38012 * 180.02562 * 8 6 5 24 24 H 1.09005 * 109.47128 * 300.00402 * 1 2 3 25 25 H 1.09002 * 109.46617 * 59.99607 * 1 2 3 26 26 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47245 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47157 * 300.00284 * 3 2 1 29 29 H 1.08999 * 109.47154 * 60.00129 * 3 2 1 30 30 H 1.08999 * 109.46793 * 300.00256 * 4 2 1 31 31 H 1.09001 * 109.46876 * 59.99837 * 4 2 1 32 32 H 1.08990 * 109.47294 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.71653 * 103.17147 * 9 8 6 34 34 H 1.08995 * 109.38877 * 342.94932 * 9 8 6 35 35 H 1.08002 * 118.17809 * 168.82582 * 10 9 8 36 36 H 1.08994 * 109.47597 * 215.00018 * 12 11 10 37 37 H 1.09006 * 109.47293 * 335.00618 * 12 11 10 38 38 H 1.08999 * 109.47315 * 300.00499 * 13 12 11 39 39 H 1.08997 * 109.46867 * 60.00178 * 13 12 11 40 40 H 0.97001 * 120.00340 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.31202 * 101.30760 * 22 11 10 42 42 H 1.08998 * 109.31475 * 220.73956 * 22 11 10 43 43 H 1.09003 * 109.77185 * 358.61715 * 23 8 6 44 44 H 1.09003 * 109.77630 * 237.81613 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0671 -2.6654 2.4171 9 6 2.9119 -2.0470 3.4508 10 6 3.9991 -3.0100 3.8388 11 6 4.0140 -4.2552 3.4852 12 6 5.1574 -5.1078 3.9719 13 6 4.7409 -5.8379 5.2505 14 6 5.8844 -6.6900 5.7375 15 1 6.8153 -6.7086 5.1902 16 6 5.7423 -7.4459 6.8818 17 7 4.6090 -7.4229 7.5485 18 14 7.1600 -8.5016 7.4860 19 1 8.3157 -8.3523 6.5655 20 1 7.5541 -8.0674 8.8504 21 1 6.7371 -9.9246 7.5222 22 6 2.9736 -4.9094 2.6257 23 6 1.6899 -4.0759 2.6144 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 2.3072 -1.8086 4.3258 34 1 3.3577 -1.1343 3.0555 35 1 4.8105 -2.6437 4.4502 36 1 5.4185 -5.8374 3.2055 37 1 6.0200 -4.4746 4.1798 38 1 4.4797 -5.1083 6.0169 39 1 3.8784 -6.4711 5.0426 40 1 4.5088 -7.9549 8.3534 41 1 3.3526 -5.0013 1.6079 42 1 2.7551 -5.9029 3.0173 43 1 1.0453 -4.4028 1.7984 44 1 1.1686 -4.1888 3.5650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = -82.931358 kcal Electronic energy + Delta-G solvation = -22443.019016 eV Core-core repulsion = 19167.181543 eV Total energy + Delta-G solvation = -3275.837472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87718 -38.71606 -36.71731 -34.75299 -33.98201 -32.64218 -30.94962 -29.88360 -27.60340 -27.54501 -26.32003 -23.97693 -23.75807 -21.82695 -20.66945 -19.70845 -18.38052 -16.95117 -16.75165 -16.24783 -15.90521 -15.41149 -14.70364 -14.60410 -14.44049 -14.09759 -13.95820 -13.63513 -13.28820 -12.91706 -12.70789 -12.57024 -12.35055 -12.10294 -12.06843 -12.02308 -11.78871 -11.55370 -11.45604 -11.40941 -11.11716 -10.93191 -10.65246 -10.48105 -10.35234 -10.05572 -9.79009 -9.65754 -9.10767 -8.70582 -8.37176 -8.20715 -6.01784 -4.04426 2.11748 2.65927 2.85172 3.29721 3.37428 3.41539 3.80687 4.44683 4.53825 4.58021 4.72218 4.97292 5.12076 5.25037 5.26081 5.33170 5.34016 5.34334 5.44500 5.48642 5.50536 5.57959 5.65399 5.67736 5.78006 5.81557 5.97135 6.11403 6.14690 6.15867 6.19051 6.37592 6.44393 6.51762 6.67184 6.82681 7.09926 7.38936 7.49174 7.66308 7.82162 7.98418 8.34113 8.39981 9.02848 9.59836 11.09255 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044413 B = 0.002959 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.292971 B = 9459.217611 C = 9590.265024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.657 3.343 7 O -0.575 6.575 8 N -0.594 5.594 9 C 0.152 3.848 10 C -0.209 4.209 11 C -0.082 4.082 12 C -0.086 4.086 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.101 4.101 23 C 0.128 3.872 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 15.921 -14.209 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.412 3.588 7 O -0.465 6.465 8 N -0.334 5.334 9 C 0.030 3.970 10 C -0.227 4.227 11 C -0.082 4.082 12 C -0.124 4.124 13 C -0.006 4.006 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.139 4.139 23 C 0.007 3.993 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.554 15.762 -14.368 22.626 hybrid contribution 0.815 -0.629 0.539 1.162 sum -6.739 15.133 -13.829 21.579 Atomic orbital electron populations 1.22510 0.94112 1.05066 1.02278 1.22035 0.94292 0.91509 0.82350 1.21851 1.02298 0.92615 1.02974 1.22509 1.01603 1.03546 0.96367 1.86302 1.71514 1.23791 1.46122 1.17853 0.78720 0.80430 0.81777 1.90862 1.42018 1.70493 1.43164 1.47112 1.52649 1.12458 1.21208 1.20507 0.90668 0.95680 0.90151 1.22004 1.00543 0.95010 1.05166 1.21030 0.97234 0.94617 0.95360 1.20975 0.94128 0.97425 0.99851 1.19048 0.96654 0.94701 0.90233 1.21307 0.99534 1.25933 1.09208 0.92654 1.25020 0.95731 0.96950 0.96718 1.69971 1.24576 1.41116 1.17719 0.86553 0.82626 0.80248 0.78689 1.19747 1.21006 1.21006 1.20787 0.93622 0.99724 0.99755 1.21762 0.97158 0.77422 1.02929 0.92249 0.91323 0.89349 0.91456 0.90278 0.91504 0.89338 0.91326 0.92185 0.90775 0.89163 0.86432 0.92674 0.92621 0.96482 0.96530 0.93047 0.90696 0.88831 0.88593 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 2 C 0.13 1.41 1.13 -90.62 -0.10 1.31 16 3 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 4 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 5 O -0.36 -4.74 8.69 -40.31 -0.35 -5.09 16 6 C 0.66 9.67 7.77 54.06 0.42 10.09 16 7 O -0.58 -9.24 11.37 -19.28 -0.22 -9.45 16 8 N -0.59 -8.51 2.97 -179.85 -0.53 -9.04 16 9 C 0.15 2.03 6.63 -5.03 -0.03 1.99 16 10 C -0.21 -3.25 9.47 -35.78 -0.34 -3.59 16 11 C -0.08 -1.41 5.11 -100.99 -0.52 -1.93 16 12 C -0.09 -1.75 5.14 -27.88 -0.14 -1.90 16 13 C 0.03 0.77 4.96 -27.88 -0.14 0.64 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.10 -1.54 5.94 -28.20 -0.17 -1.71 16 23 C 0.13 1.79 6.49 -3.55 -0.02 1.77 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.11 7.16 -51.93 -0.37 0.73 16 35 H 0.12 1.81 7.73 -52.49 -0.41 1.41 16 36 H 0.05 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.06 1.11 7.78 -51.93 -0.40 0.71 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 43 H 0.10 1.31 7.07 -51.93 -0.37 0.94 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.09 351.37 -8.21 -39.29 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.61 Total: -1.03 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.50 Total: -10.55 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.20 Total: -34.96 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.57 Total: -14.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.09 -8.21 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.638 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds