Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.53008 * 109.46927 * 240.00391 * 2 1 3 5 5 O 1.45190 * 109.47116 * 120.00422 * 2 1 3 6 6 C 1.34643 * 117.00405 * 59.99719 * 5 2 1 7 7 O 1.21505 * 119.99376 * 0.02562 * 6 5 2 8 8 N 1.34768 * 120.00119 * 180.02562 * 6 5 2 9 9 C 1.47340 * 121.37684 * 0.02562 * 8 6 5 10 10 C 1.53104 * 107.88396 * 118.19445 * 9 8 6 11 11 C 1.49958 * 110.46581 * 45.27316 * 10 9 8 12 12 C 1.29459 * 124.61112 * 341.46114 * 11 10 9 13 13 C 1.50698 * 118.16848 * 180.62264 * 12 11 10 14 14 C 1.53006 * 109.47184 * 94.73682 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47510 * 119.99847 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99882 * 19 17 15 23 23 C 1.47008 * 121.37600 * 180.02562 * 8 6 5 24 24 H 1.09000 * 109.46887 * 300.00288 * 1 2 3 25 25 H 1.09006 * 109.47061 * 59.99497 * 1 2 3 26 26 H 1.08994 * 109.47515 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46856 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47213 * 299.99600 * 3 2 1 29 29 H 1.08994 * 109.46868 * 60.00295 * 3 2 1 30 30 H 1.09001 * 109.46599 * 300.00005 * 4 2 1 31 31 H 1.08997 * 109.47121 * 59.99884 * 4 2 1 32 32 H 1.08995 * 109.47126 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.77996 * 237.78913 * 9 8 6 34 34 H 1.09004 * 109.77983 * 358.59357 * 9 8 6 35 35 H 1.09003 * 109.31654 * 165.75148 * 10 9 8 36 36 H 1.09002 * 109.30907 * 285.35999 * 10 9 8 37 37 H 1.07998 * 117.69347 * 161.22735 * 11 10 9 38 38 H 1.09001 * 109.47612 * 334.73737 * 13 12 11 39 39 H 1.09001 * 109.47122 * 214.73568 * 13 12 11 40 40 H 1.09001 * 109.47002 * 299.99404 * 14 13 12 41 41 H 1.08993 * 109.46955 * 59.99842 * 14 13 12 42 42 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.52432 * 103.06222 * 23 8 6 44 44 H 1.08999 * 109.56914 * 342.90500 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0139 -0.6845 1.1854 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0671 -2.6655 2.4170 9 6 2.9168 -2.0440 3.4478 10 6 2.1451 -2.0671 4.7699 11 6 1.5140 -3.4103 4.9852 12 6 1.3105 -4.2851 4.0528 13 6 0.6505 -5.5863 4.4299 14 6 -0.8561 -5.4844 4.1830 15 6 -1.5162 -6.7854 4.5607 16 1 -0.9206 -7.6034 4.9387 17 6 -2.8801 -6.9320 4.4228 18 7 -3.6052 -5.9362 3.9621 19 14 -3.6982 -8.5449 4.8903 20 1 -2.6696 -9.4987 5.3777 21 1 -4.6958 -8.3014 5.9630 22 1 -4.3796 -9.1173 3.7014 23 6 1.6907 -4.0729 2.6137 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2492 33 1 3.8434 -2.6086 3.5517 34 1 3.1409 -1.0142 3.1695 35 1 2.8293 -1.8521 5.5907 36 1 1.3632 -1.3080 4.7442 37 1 1.2112 -3.6675 5.9895 38 1 0.8326 -5.7940 5.4844 39 1 1.0642 -6.3925 3.8241 40 1 -1.2698 -4.6783 4.7889 41 1 -1.0382 -5.2768 3.1286 42 1 -4.5648 -6.0394 3.8647 43 1 2.5349 -4.7145 2.3614 44 1 0.8433 -4.3171 1.9732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -81.595138 kcal Electronic energy + Delta-G solvation = -22778.146136 eV Core-core repulsion = 19502.366607 eV Total energy + Delta-G solvation = -3275.779529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77801 -38.67365 -36.55443 -34.71446 -33.83181 -32.59542 -31.63527 -29.14084 -27.51405 -27.40760 -25.93985 -25.08100 -23.01437 -22.04322 -20.71857 -19.31716 -17.84584 -17.45709 -16.63215 -16.26625 -15.88475 -15.30014 -14.62913 -14.56566 -14.41226 -14.19123 -13.79681 -13.53156 -13.31862 -12.69901 -12.58438 -12.47811 -12.27542 -12.18586 -12.00379 -11.94470 -11.82460 -11.45573 -11.38098 -11.27922 -11.03449 -10.89968 -10.73954 -10.41866 -10.35357 -9.87837 -9.79364 -9.62975 -9.05548 -8.62630 -8.32807 -8.19785 -5.96459 -3.99729 2.18573 2.67068 2.98737 3.33092 3.40458 3.44365 3.86369 4.48472 4.64385 4.68099 4.83083 4.90503 5.07271 5.17271 5.34194 5.34597 5.39012 5.42435 5.45881 5.58453 5.63603 5.67414 5.71268 5.76228 5.80983 5.88158 5.95283 6.05239 6.15890 6.25090 6.35371 6.41335 6.50173 6.54981 6.66695 6.88305 7.11443 7.41701 7.53220 7.71683 7.86185 8.03504 8.43709 8.47035 9.07713 9.64312 11.14546 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.003918 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.363478 B = 7144.226748 C = 7946.438422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.655 3.345 7 O -0.564 6.564 8 N -0.595 5.595 9 C 0.113 3.887 10 C -0.100 4.100 11 C -0.176 4.176 12 C -0.114 4.114 13 C -0.079 4.079 14 C 0.029 3.971 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.166 3.834 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.953 14.098 -5.311 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.410 3.590 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.010 4.010 10 C -0.137 4.137 11 C -0.194 4.194 12 C -0.115 4.115 13 C -0.117 4.117 14 C -0.008 4.008 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.045 3.955 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.545 14.054 -5.686 21.009 hybrid contribution -0.706 -0.810 0.308 1.118 sum 13.839 13.244 -5.378 19.895 Atomic orbital electron populations 1.22525 0.93882 1.05479 1.02326 1.22034 0.94510 0.91346 0.82247 1.21842 1.01987 0.92739 1.03027 1.22514 1.01274 1.03762 0.96461 1.86255 1.71675 1.23810 1.46282 1.17842 0.78705 0.80369 0.82078 1.90914 1.40895 1.70342 1.43113 1.47007 1.52846 1.12573 1.21109 1.21773 0.92927 0.98950 0.87332 1.20707 0.99528 0.96757 0.96737 1.21605 1.03344 0.95018 0.99441 1.21439 0.97798 0.98668 0.93602 1.20868 0.98942 0.91643 1.00238 1.19073 0.87396 0.97065 0.97301 1.21288 0.92404 0.99147 1.43173 0.92587 1.25027 0.97573 0.96504 0.95320 1.69985 1.06074 1.31144 1.46022 0.86553 0.79471 0.83940 0.78129 1.19728 1.21058 1.21010 1.20445 1.01451 0.78058 0.95501 0.92144 0.91307 0.89082 0.91651 0.90285 0.91516 0.89231 0.91292 0.92376 0.90927 0.89183 0.90337 0.90991 0.87535 0.92252 0.92455 0.96583 0.96432 0.93063 0.90453 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.37 37.16 0.31 -2.01 16 2 C 0.14 1.60 1.13 -90.61 -0.10 1.49 16 3 C -0.14 -1.16 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 5 O -0.37 -5.12 8.60 -40.33 -0.35 -5.46 16 6 C 0.66 10.81 7.77 54.05 0.42 11.23 16 7 O -0.56 -10.74 11.44 -19.28 -0.22 -10.96 16 8 N -0.60 -9.17 2.97 -179.91 -0.53 -9.71 16 9 C 0.11 1.35 6.52 -3.53 -0.02 1.33 16 10 C -0.10 -1.24 6.27 -28.19 -0.18 -1.42 16 11 C -0.18 -2.79 9.38 -35.96 -0.34 -3.13 16 12 C -0.11 -2.02 5.18 -100.81 -0.52 -2.54 16 13 C -0.08 -1.63 5.17 -27.88 -0.14 -1.77 16 14 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 15 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.17 2.77 6.30 -5.09 -0.03 2.74 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.96 7.00 -51.93 -0.36 0.60 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.11 1.71 7.74 -52.49 -0.41 1.30 16 38 H 0.06 1.18 7.80 -51.93 -0.41 0.78 16 39 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.11 2.10 7.22 -51.93 -0.37 1.73 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -32.52 351.53 -8.22 -40.74 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.62 Total: -0.33 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.52 Total: -9.75 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.20 Total: -36.46 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.57 Total: -16.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.52 -8.22 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.854 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds