Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53004 * 109.46663 * 240.00401 * 2 1 3 5 5 C 1.50697 * 109.47387 * 59.99813 * 4 2 1 6 6 H 1.08000 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99821 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99686 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00356 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46869 * 89.99730 * 9 7 5 11 11 H 1.48492 * 109.47317 * 209.99658 * 9 7 5 12 12 H 1.48499 * 109.46841 * 330.00385 * 9 7 5 13 13 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 14 14 N 1.46905 * 109.47039 * 299.99787 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46916 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.46771 * 304.99771 * 16 15 14 18 18 O 1.42897 * 109.46931 * 64.99951 * 16 15 14 19 19 C 1.50703 * 109.46875 * 185.00054 * 16 15 14 20 20 C 1.34513 * 125.78420 * 209.71730 * 19 16 15 21 21 C 1.41384 * 106.83647 * 179.88791 * 20 19 16 22 22 C 1.34516 * 106.84246 * 0.37000 * 21 20 19 23 23 O 1.34301 * 108.41955 * 359.77058 * 22 21 20 24 24 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 25 25 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 29 29 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 30 30 H 1.09001 * 109.46514 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.46924 * 299.99657 * 4 2 1 32 32 H 0.97004 * 119.99803 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47393 * 180.02562 * 13 2 1 34 34 H 1.08998 * 109.47408 * 59.99713 * 13 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 37 37 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 38 38 H 1.08997 * 109.47075 * 60.00243 * 17 16 15 39 39 H 1.09004 * 109.46644 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47308 * 300.00032 * 17 16 15 41 41 H 0.96693 * 114.00429 * 60.00369 * 18 16 15 42 42 H 1.07999 * 126.58338 * 0.02562 * 20 19 16 43 43 H 1.08003 * 126.57720 * 180.16324 * 21 20 19 44 44 H 1.07998 * 125.79223 * 179.75400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4329 0.1388 -4.8058 9 14 2.9449 -2.0003 -3.9035 10 1 2.0862 -3.2110 -3.9495 11 1 3.7371 -1.9075 -5.1561 12 1 3.8648 -2.0898 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6702 16 6 1.4923 0.0532 4.8955 17 6 1.8973 1.5260 4.8084 18 8 0.0675 -0.0476 4.9359 19 6 2.0747 -0.5548 6.1455 20 6 1.4833 -0.5879 7.3532 21 6 2.3755 -1.2493 8.2281 22 6 3.4623 -1.5734 7.5046 23 8 3.2744 -1.1504 6.2439 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7216 -1.2491 31 1 1.6766 -1.7488 -1.2493 32 1 1.6672 -0.1926 -5.6869 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6587 -1.7223 3.6872 37 1 3.1117 -0.6941 3.6868 38 1 1.4761 1.9657 3.9043 39 1 1.5204 2.0587 5.6815 40 1 2.9841 1.6028 4.7775 41 1 -0.2612 -0.9552 4.9916 42 1 0.5122 -0.1882 7.6056 43 1 2.2166 -1.4520 9.2769 44 1 4.3375 -2.0866 7.8748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266176038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -47.183735 kcal Electronic energy + Delta-G solvation = -22546.116342 eV Core-core repulsion = 19271.829003 eV Total energy + Delta-G solvation = -3274.287339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.85746 -38.75617 -37.28006 -34.18763 -33.13787 -32.36531 -31.54575 -28.79579 -27.76847 -26.45676 -26.32744 -24.56232 -22.46678 -21.97442 -21.45479 -20.30019 -18.31757 -17.94214 -16.83882 -16.51679 -16.33203 -15.62040 -15.38682 -14.62886 -14.28023 -14.02245 -13.60426 -13.35085 -13.07146 -13.03881 -12.76735 -12.67575 -12.43050 -12.28909 -12.13269 -12.00064 -11.80770 -11.44623 -11.04235 -10.94074 -10.82977 -10.55513 -10.47205 -10.28610 -10.16793 -9.79749 -9.65685 -9.27193 -8.89107 -8.74941 -8.48247 -8.18323 -5.98547 -3.94565 1.45386 2.35602 2.67478 3.32807 3.40710 3.44338 3.81767 4.19845 4.49533 4.56911 4.65861 4.79537 4.88330 4.93770 5.34501 5.45453 5.50110 5.53493 5.63099 5.65638 5.69336 5.75206 5.81348 5.87947 5.90726 6.15119 6.21981 6.23212 6.27806 6.44036 6.62226 6.70290 6.82518 6.83364 7.09095 7.15086 7.19202 7.27874 7.30506 7.35309 7.48249 7.63979 7.87008 8.61530 9.07654 9.64657 11.14593 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.003314 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.549252 B = 8447.731374 C = 8889.103477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.117 4.117 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.677 5.677 15 C 0.036 3.964 16 C 0.219 3.781 17 C -0.124 4.124 18 O -0.538 6.538 19 C -0.041 4.041 20 C -0.196 4.196 21 C -0.217 4.217 22 C -0.042 4.042 23 O -0.169 6.169 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.346 0.654 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.378 0.622 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -2.724 25.203 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.061 4.061 14 N -0.310 5.310 15 C -0.095 4.095 16 C 0.177 3.823 17 C -0.181 4.181 18 O -0.343 6.343 19 C -0.092 4.092 20 C -0.216 4.216 21 C -0.236 4.236 22 C -0.110 4.110 23 O -0.065 6.065 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.166 0.834 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.225 0.775 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.138 -1.644 24.723 24.869 hybrid contribution 0.001 -2.521 0.174 2.527 sum 2.138 -4.165 24.897 25.333 Atomic orbital electron populations 1.21786 0.95554 1.00424 1.01065 1.20412 0.95110 0.96200 0.93126 1.21611 0.99647 0.95464 1.00757 1.19632 0.96020 0.95219 0.93361 1.21140 1.31409 1.13185 0.88669 0.90383 1.25019 0.95813 0.96745 0.96041 1.69915 1.46211 1.40619 0.97816 0.86848 0.81315 0.84000 0.77500 1.20547 1.21562 1.19149 1.22152 0.99780 0.94642 0.89539 1.60493 1.17173 1.52972 1.00387 1.22547 1.01597 0.94898 0.90416 1.19553 0.80040 0.96482 0.86232 1.21645 1.01684 0.91094 1.03681 1.86651 1.18748 1.32837 1.96091 1.23373 0.85673 1.01420 0.98717 1.21586 1.02300 1.05440 0.92242 1.21869 0.95282 1.05233 1.01260 1.24101 1.01428 1.03651 0.81779 1.84044 1.33665 1.58130 1.30615 0.94410 0.91156 0.94235 0.94243 0.92137 0.93586 0.96733 0.97454 0.92910 0.91587 0.95962 0.83352 0.95223 0.89784 0.89071 0.92421 0.91040 0.77457 0.83231 0.83475 0.78121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.97 8.20 -34.44 -0.28 -14.25 16 6 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.84 13.96 55.43 0.77 -27.07 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.07 1.09 4.65 -3.82 -0.02 1.08 16 14 N -0.68 -9.19 4.73 -113.78 -0.54 -9.73 16 15 C 0.04 0.42 4.68 -3.82 -0.02 0.40 16 16 C 0.22 2.34 1.11 -91.77 -0.10 2.24 16 17 C -0.12 -1.36 8.61 37.16 0.32 -1.04 16 18 O -0.54 -5.46 12.12 -35.23 -0.43 -5.88 16 19 C -0.04 -0.44 5.85 -35.62 -0.21 -0.65 16 20 C -0.20 -1.96 10.36 -39.70 -0.41 -2.37 16 21 C -0.22 -1.90 10.91 -39.70 -0.43 -2.33 16 22 C -0.04 -0.36 12.09 29.42 0.36 0.00 16 23 O -0.17 -1.87 10.15 5.71 0.06 -1.81 16 24 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 25 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16 30 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 31 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.35 4.66 6.33 -39.29 -0.25 4.41 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 38 H 0.09 1.08 7.47 -51.93 -0.39 0.70 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.38 2.74 9.04 45.56 0.41 3.15 16 42 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.20 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -31.04 349.12 -6.56 -37.60 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.53 Total: 4.87 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -0.48 Total: -20.40 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.24 Total: -36.80 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.37 Total: -7.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.04 -6.56 -37.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266176038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.587 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds