Wall clock time and date at job start Tue Mar 31 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00231 * 2 1 4 4 N 1.46502 * 109.47128 * 125.50789 * 3 2 1 5 5 C 1.46495 * 120.00230 * 269.43904 * 4 3 2 6 6 C 1.50701 * 109.47344 * 274.20026 * 5 4 3 7 7 H 1.08004 * 119.99490 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00180 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99824 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46912 * 59.99914 * 10 8 6 12 12 H 1.48503 * 109.46660 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47315 * 299.99804 * 10 8 6 14 14 C 1.34774 * 119.99683 * 89.43757 * 4 3 2 15 15 O 1.21289 * 120.00316 * 5.22761 * 14 4 3 16 16 C 1.50696 * 120.00089 * 184.94733 * 14 4 3 17 17 H 1.09004 * 109.54233 * 34.31458 * 16 14 4 18 18 C 1.53181 * 109.54560 * 274.13976 * 16 14 4 19 19 C 1.53086 * 109.16690 * 183.15224 * 18 16 14 20 20 O 1.42906 * 109.41561 * 57.60642 * 19 18 16 21 21 C 1.42901 * 114.09691 * 298.84437 * 20 19 18 22 22 H 1.08997 * 109.48309 * 301.17071 * 21 20 19 23 23 C 1.53007 * 109.48108 * 181.14935 * 21 20 19 24 24 C 1.53003 * 109.46676 * 65.00157 * 23 21 20 25 25 C 1.53092 * 109.41801 * 61.15845 * 21 20 19 26 26 H 1.08001 * 120.00447 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00453 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99999 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46901 * 5.51492 * 3 2 1 30 30 H 1.08994 * 109.47375 * 245.51090 * 3 2 1 31 31 H 1.08995 * 109.47188 * 34.20155 * 5 4 3 32 32 H 1.09002 * 109.47051 * 154.19879 * 5 4 3 33 33 H 0.96993 * 119.99638 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.51951 * 303.06015 * 18 16 14 35 35 H 1.08994 * 109.52118 * 63.24110 * 18 16 14 36 36 H 1.08998 * 109.48326 * 177.58878 * 19 18 16 37 37 H 1.09008 * 109.48200 * 297.62851 * 19 18 16 38 38 H 1.09002 * 109.47272 * 184.99864 * 23 21 20 39 39 H 1.08997 * 109.47442 * 305.00414 * 23 21 20 40 40 H 1.09000 * 109.47483 * 59.99991 * 24 23 21 41 41 H 1.09005 * 109.46662 * 179.97438 * 24 23 21 42 42 H 1.08994 * 109.47206 * 300.00151 * 24 23 21 43 43 H 1.09002 * 109.52680 * 182.48536 * 25 21 20 44 44 H 1.08998 * 109.52383 * 62.29388 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0024 1.3268 1.1244 5 6 2.5813 1.8654 2.4200 6 6 2.7829 3.3589 2.4327 7 1 3.1848 3.8569 1.5627 8 6 2.4551 4.0892 3.5553 9 7 1.9661 3.4827 4.6148 10 14 2.7056 5.9403 3.5712 11 1 1.8951 6.5588 2.4914 12 1 2.2786 6.4862 4.8846 13 1 4.1415 6.2474 3.3501 14 6 4.2536 0.8513 0.9667 15 8 4.6328 0.4933 -0.1283 16 6 5.1835 0.7702 2.1498 17 1 4.6118 0.5343 3.0474 18 6 5.8961 2.1135 2.3344 19 6 6.8956 1.9978 3.4882 20 8 7.8213 0.9449 3.2111 21 6 7.2167 -0.3428 3.0755 22 1 6.6858 -0.5937 3.9938 23 6 8.3004 -1.3899 2.8103 24 6 9.2144 -1.4986 4.0325 25 6 6.2302 -0.3211 1.9050 26 1 -0.5401 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3592 2.1312 0.0988 30 1 2.6140 1.4068 -0.9351 31 1 1.5274 1.6396 2.5822 32 1 3.1762 1.4117 3.2127 33 1 1.7351 3.9965 5.4043 34 1 6.4261 2.3736 1.4181 35 1 5.1627 2.8864 2.5639 36 1 7.4363 2.9380 3.5965 37 1 6.3605 1.7775 4.4120 38 1 7.8332 -2.3559 2.6189 39 1 8.8885 -1.0923 1.9422 40 1 8.6263 -1.7962 4.9007 41 1 9.9861 -2.2449 3.8438 42 1 9.6815 -0.5326 4.2240 43 1 5.7355 -1.2894 1.8275 44 1 6.7669 -0.1102 0.9801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292192979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:50 Heat of formation + Delta-G solvation = -83.812331 kcal Electronic energy + Delta-G solvation = -23355.616605 eV Core-core repulsion = 20079.740931 eV Total energy + Delta-G solvation = -3275.875674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93025 -38.37454 -35.50775 -34.00376 -33.64920 -32.86180 -32.10486 -29.53131 -27.58047 -26.54722 -24.69722 -23.41610 -22.83238 -21.47264 -20.38115 -19.51881 -18.10493 -16.62117 -16.36758 -16.14817 -15.84300 -15.36510 -14.67486 -14.52857 -14.35577 -13.84347 -13.71991 -13.52318 -13.37846 -12.94025 -12.58346 -12.46727 -12.12405 -11.75267 -11.62869 -11.47813 -11.31059 -11.11424 -11.01645 -10.92071 -10.91511 -10.73435 -10.63500 -10.25038 -10.19675 -9.95091 -9.79064 -9.41228 -9.14328 -8.75993 -8.55838 -7.76875 -6.23890 -4.30852 2.54961 3.19827 3.25738 3.26958 3.37708 3.97853 4.06057 4.28620 4.87848 5.06435 5.09267 5.16330 5.26617 5.30477 5.35305 5.45656 5.53552 5.55547 5.61434 5.72173 5.80579 5.91897 5.96339 6.00510 6.06978 6.08637 6.17202 6.21074 6.30427 6.31529 6.34639 6.45827 6.63238 6.75236 6.81906 6.90698 7.03833 7.16890 7.51659 7.55822 7.70727 8.00210 8.31751 8.73693 8.99125 9.36189 10.82543 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.006587 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.566868 B = 4249.892962 C = 5941.593974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.236 3.764 6 C -0.537 4.537 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.522 3.478 15 O -0.574 6.574 16 C -0.100 4.100 17 H 0.094 0.906 18 C -0.149 4.149 19 C 0.067 3.933 20 O -0.383 6.383 21 C 0.092 3.908 22 H 0.056 0.944 23 C -0.115 4.115 24 C -0.149 4.149 25 C -0.131 4.131 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -6.934 -1.400 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.321 5.321 5 C 0.116 3.884 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.310 3.690 15 O -0.455 6.455 16 C -0.121 4.121 17 H 0.112 0.888 18 C -0.187 4.187 19 C -0.010 4.010 20 O -0.302 6.302 21 C 0.034 3.966 22 H 0.074 0.926 23 C -0.152 4.152 24 C -0.206 4.206 25 C -0.169 4.169 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.142 -7.034 -1.770 9.504 hybrid contribution -0.502 1.057 0.229 1.192 sum 5.640 -5.978 -1.541 8.362 Atomic orbital electron populations 1.23760 0.95768 1.01545 1.01964 1.23381 0.96083 0.99282 0.98661 1.20399 0.92137 0.94682 0.90875 1.48221 1.10785 1.59193 1.13864 1.19485 0.96565 0.93824 0.78490 1.21413 1.43819 0.92082 1.00197 0.92057 1.24922 0.94692 0.98710 0.95283 1.69908 1.42508 1.36223 1.04033 0.86624 0.78916 0.85039 0.77359 1.20126 1.21113 1.19939 1.20427 0.82303 0.76541 0.89684 1.90576 1.76138 1.51527 1.27243 1.21243 0.95708 0.97168 0.98029 0.88764 1.22246 0.99525 0.97534 0.99406 1.22556 0.91272 0.90322 0.96840 1.87853 1.34253 1.15899 1.92236 1.22103 0.93396 0.84144 0.96947 0.92621 1.21528 0.96984 0.97456 0.99260 1.21715 0.99272 1.01959 0.97639 1.22071 0.96700 0.98393 0.99712 0.88423 0.88931 0.87981 0.89849 0.90190 0.94813 0.94066 0.92404 0.91620 0.87032 0.88951 0.92905 0.90872 0.91184 0.93028 0.93113 0.91937 0.91405 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.02 0.42 -2.39 16 2 C -0.15 -2.58 9.84 -36.02 -0.35 -2.93 16 3 C 0.14 2.67 5.90 -5.19 -0.03 2.64 16 4 N -0.59 -12.35 2.44 -176.44 -0.43 -12.78 16 5 C 0.24 5.43 4.91 -5.20 -0.03 5.40 16 6 C -0.54 -13.29 7.46 -34.44 -0.26 -13.54 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.58 13.29 55.43 0.74 -22.85 16 10 Si 0.89 19.87 29.54 -169.99 -5.02 14.84 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 C 0.52 10.86 6.77 -10.99 -0.07 10.78 16 15 O -0.57 -12.98 15.61 5.55 0.09 -12.90 16 16 C -0.10 -1.84 1.85 -91.59 -0.17 -2.01 16 17 H 0.09 1.76 6.17 -51.93 -0.32 1.44 16 18 C -0.15 -2.71 5.36 -26.59 -0.14 -2.86 16 19 C 0.07 1.06 6.84 37.20 0.25 1.32 16 20 O -0.38 -6.09 9.94 -35.23 -0.35 -6.44 16 21 C 0.09 1.32 2.64 -26.68 -0.07 1.25 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.11 -1.37 5.64 -26.73 -0.15 -1.52 16 24 C -0.15 -1.60 9.81 37.16 0.36 -1.23 16 25 C -0.13 -2.10 4.31 -26.59 -0.11 -2.22 16 26 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.08 1.55 7.72 -51.92 -0.40 1.15 16 30 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 31 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.04 0.97 5.66 -51.93 -0.29 0.68 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 2.29 5.88 -51.93 -0.31 1.98 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -27.44 353.11 -7.65 -35.09 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.54 Total: 5.41 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.45 Total: -5.70 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.31 Total: -35.63 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.26 Total: -19.34 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.44 -7.65 -35.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.723 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds