Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50705 * 119.99759 * 2 1 4 4 N 1.46497 * 109.46921 * 125.00089 * 3 2 1 5 5 C 1.46500 * 120.00015 * 265.84557 * 4 3 2 6 6 C 1.50696 * 109.47304 * 264.76911 * 5 4 3 7 7 H 1.08000 * 120.00020 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99966 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99729 * 180.02562 * 8 6 5 10 10 Si 1.86792 * 119.99945 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47128 * 90.00064 * 10 8 6 12 12 H 1.48498 * 109.47166 * 209.99739 * 10 8 6 13 13 H 1.48497 * 109.47534 * 329.99965 * 10 8 6 14 14 C 1.34779 * 120.00300 * 85.85162 * 4 3 2 15 15 O 1.21280 * 119.99916 * 6.26090 * 14 4 3 16 16 C 1.50700 * 119.99994 * 186.54808 * 14 4 3 17 17 H 1.09000 * 109.54245 * 310.07409 * 16 14 4 18 18 C 1.53173 * 109.54564 * 70.34669 * 16 14 4 19 19 C 1.53096 * 109.16338 * 62.88931 * 18 16 14 20 20 O 1.42900 * 109.41619 * 57.60717 * 19 18 16 21 21 C 1.42911 * 114.09709 * 298.84051 * 20 19 18 22 22 H 1.08998 * 109.48135 * 301.18108 * 21 20 19 23 23 C 1.52996 * 109.48036 * 181.14221 * 21 20 19 24 24 C 1.52999 * 109.47470 * 65.05651 * 23 21 20 25 25 C 1.53094 * 109.41215 * 61.16274 * 21 20 19 26 26 H 1.08000 * 119.99918 * 0.02562 * 1 2 3 27 27 H 1.07992 * 119.99994 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99918 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47256 * 5.00087 * 3 2 1 30 30 H 1.08997 * 109.46613 * 244.99931 * 3 2 1 31 31 H 1.09007 * 109.46863 * 24.77371 * 5 4 3 32 32 H 1.09004 * 109.47001 * 144.76949 * 5 4 3 33 33 H 0.96997 * 119.99900 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.52204 * 182.79133 * 18 16 14 35 35 H 1.08993 * 109.52347 * 302.97651 * 18 16 14 36 36 H 1.09000 * 109.47591 * 297.62347 * 19 18 16 37 37 H 1.09000 * 109.49016 * 177.59253 * 19 18 16 38 38 H 1.09003 * 109.47343 * 185.05892 * 23 21 20 39 39 H 1.09007 * 109.47481 * 305.05633 * 23 21 20 40 40 H 1.09003 * 109.47034 * 300.00429 * 24 23 21 41 41 H 1.09007 * 109.46321 * 59.99820 * 24 23 21 42 42 H 1.09001 * 109.47503 * 179.97438 * 24 23 21 43 43 H 1.09001 * 109.51968 * 182.48954 * 25 21 20 44 44 H 1.08998 * 109.52834 * 62.29744 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5893 1.9474 2.3978 6 6 3.0705 3.3749 2.4389 7 1 3.6220 3.7830 1.6049 8 6 2.8057 4.1602 3.5409 9 7 3.2252 5.4061 3.5765 10 14 1.8511 3.4545 4.9831 11 1 2.7973 2.8470 5.9531 12 1 1.0875 4.5397 5.6498 13 1 0.9098 2.4158 4.4930 14 6 4.2218 0.7905 1.0072 15 8 4.5988 0.3835 -0.0712 16 6 5.1238 0.6849 2.2098 17 1 5.1717 1.6494 2.7154 18 6 4.5743 -0.3732 3.1713 19 6 4.5843 -1.7373 2.4765 20 8 5.9150 -2.0474 2.0578 21 6 6.4635 -1.1178 1.1211 22 1 5.8311 -1.0796 0.2341 23 6 7.8723 -1.5639 0.7249 24 6 7.7937 -2.8945 -0.0262 25 6 6.5290 0.2712 1.7615 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.5026 1.9277 2.4806 32 1 3.0271 1.3924 3.2276 33 1 3.0386 5.9587 4.3515 34 1 5.1992 -0.4143 4.0635 35 1 3.5533 -0.1149 3.4523 36 1 3.9274 -1.7073 1.6072 37 1 4.2343 -2.5015 3.1704 38 1 8.3247 -0.8095 0.0812 39 1 8.4798 -1.6881 1.6214 40 1 7.3412 -3.6489 0.6175 41 1 7.1862 -2.7702 -0.9228 42 1 8.7973 -3.2121 -0.3089 43 1 6.9057 0.9902 1.0341 44 1 7.1933 0.2432 2.6252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292192982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -71.677832 kcal Electronic energy + Delta-G solvation = -23829.322589 eV Core-core repulsion = 20553.973107 eV Total energy + Delta-G solvation = -3275.349483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36829 -38.10751 -35.62285 -34.13721 -33.60699 -32.91545 -32.18350 -29.57620 -28.23052 -26.45768 -24.79926 -23.38509 -22.78724 -21.26250 -20.78498 -19.70200 -17.95699 -17.11894 -16.33394 -16.15226 -15.81388 -15.62162 -14.87671 -14.54981 -14.23383 -14.14776 -13.57228 -13.43271 -13.25985 -13.01125 -12.80766 -12.51843 -12.28925 -12.08303 -11.69728 -11.57891 -11.46547 -11.27926 -11.12500 -11.00735 -10.93251 -10.73734 -10.63157 -10.34696 -10.33643 -10.02913 -9.67735 -9.35441 -9.16240 -8.77553 -8.62286 -7.83251 -6.26978 -4.28972 2.41484 3.12730 3.20719 3.22613 3.25684 3.88273 4.06062 4.21295 4.88202 5.00068 5.04761 5.15308 5.16996 5.23217 5.33185 5.37016 5.40643 5.47251 5.61062 5.74340 5.79970 5.88983 5.93979 5.95563 6.06251 6.07307 6.13610 6.19405 6.20943 6.26464 6.33739 6.39542 6.41756 6.50116 6.60548 6.67177 6.78815 6.89286 7.31459 7.38352 7.56405 8.07629 8.34119 8.76769 8.87232 9.31975 10.85608 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016061 B = 0.006259 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.988412 B = 4472.181820 C = 5267.047339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.142 3.858 4 N -0.586 5.586 5 C 0.203 3.797 6 C -0.543 4.543 7 H 0.078 0.922 8 C 0.078 3.922 9 N -0.889 5.889 10 Si 0.869 3.131 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.528 3.472 15 O -0.566 6.566 16 C -0.112 4.112 17 H 0.117 0.883 18 C -0.149 4.149 19 C 0.064 3.936 20 O -0.384 6.384 21 C 0.074 3.926 22 H 0.096 0.904 23 C -0.114 4.114 24 C -0.147 4.147 25 C -0.125 4.125 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -12.851 -2.422 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.315 5.315 5 C 0.082 3.918 6 C -0.581 4.581 7 H 0.096 0.904 8 C -0.126 4.126 9 N -0.526 5.526 10 Si 0.695 3.305 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.133 4.133 17 H 0.135 0.865 18 C -0.187 4.187 19 C -0.013 4.013 20 O -0.303 6.303 21 C 0.017 3.983 22 H 0.113 0.887 23 C -0.151 4.151 24 C -0.204 4.204 25 C -0.163 4.163 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.809 -13.014 -2.788 13.432 hybrid contribution -0.803 0.302 0.952 1.281 sum 1.006 -12.711 -1.836 12.883 Atomic orbital electron populations 1.23790 0.95762 1.01628 1.01904 1.23407 0.96073 0.99318 0.98706 1.20443 0.92246 0.94628 0.90819 1.47896 1.13049 1.56161 1.14432 1.19992 0.96406 0.94216 0.81176 1.21384 1.37292 0.94425 1.05045 0.90409 1.24868 0.95076 0.94623 0.98058 1.69886 1.45408 1.07012 1.30328 0.86961 0.80908 0.79441 0.83208 1.19698 1.20799 1.18819 1.20411 0.81763 0.76415 0.89693 1.90500 1.74384 1.50819 1.28977 1.21359 0.94494 1.02076 0.95374 0.86550 1.22275 1.02915 0.94822 0.98686 1.22488 0.84534 0.96167 0.98071 1.87810 1.29234 1.50273 1.63005 1.22592 0.95320 0.87447 0.92913 0.88690 1.21518 0.95570 0.97806 1.00206 1.21696 1.00868 0.97606 1.00249 1.21968 0.95396 0.97837 1.01105 0.88410 0.88825 0.87856 0.89767 0.89906 0.94814 0.94582 0.92295 0.90250 0.89792 0.93578 0.89319 0.90914 0.91810 0.92232 0.92933 0.93296 0.90673 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.01 0.42 -2.13 16 2 C -0.16 -2.38 9.82 -36.03 -0.35 -2.73 16 3 C 0.14 2.51 5.83 -5.19 -0.03 2.48 16 4 N -0.59 -11.63 2.46 -176.43 -0.43 -12.07 16 5 C 0.20 4.36 3.74 -5.20 -0.02 4.34 16 6 C -0.54 -14.02 9.36 -34.44 -0.32 -14.34 16 7 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 10 Si 0.87 19.38 27.47 -169.99 -4.67 14.71 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 14 C 0.53 10.41 5.63 -10.98 -0.06 10.35 16 15 O -0.57 -11.82 13.18 5.56 0.07 -11.75 16 16 C -0.11 -2.00 2.20 -91.59 -0.20 -2.20 16 17 H 0.12 2.30 7.12 -51.93 -0.37 1.93 16 18 C -0.15 -2.33 5.29 -26.59 -0.14 -2.47 16 19 C 0.06 0.96 6.62 37.21 0.25 1.20 16 20 O -0.38 -6.11 9.94 -35.23 -0.35 -6.46 16 21 C 0.07 1.17 2.36 -26.68 -0.06 1.10 16 22 H 0.10 1.72 5.45 -51.93 -0.28 1.43 16 23 C -0.11 -1.49 5.64 -26.73 -0.15 -1.64 16 24 C -0.15 -1.77 9.81 37.16 0.36 -1.40 16 25 C -0.12 -2.03 4.60 -26.59 -0.12 -2.15 16 26 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 30 H 0.08 1.50 7.47 -51.93 -0.39 1.12 16 31 H 0.03 0.72 7.09 -51.93 -0.37 0.36 16 32 H 0.04 0.74 3.94 -51.93 -0.20 0.54 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.33 5.73 -51.93 -0.30 1.03 16 36 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -28.62 343.62 -7.29 -35.91 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.33 Total: 6.81 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.54 Total: -7.64 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.34 Total: -36.76 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.28 Total: -18.21 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.67 Total: 14.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.62 -7.29 -35.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.768 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds