Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50701 * 120.00073 * 2 1 4 4 N 1.46499 * 109.46863 * 123.72430 * 3 2 1 5 5 C 1.46508 * 120.00187 * 88.11239 * 4 3 2 6 6 C 1.50704 * 109.47074 * 87.50974 * 5 4 3 7 7 H 1.08002 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99842 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99860 * 179.72567 * 8 6 5 11 11 H 1.48496 * 109.46916 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46741 * 120.00590 * 10 8 6 13 13 H 1.48497 * 109.47035 * 240.00383 * 10 8 6 14 14 C 1.34775 * 120.00266 * 268.10609 * 4 3 2 15 15 O 1.21279 * 119.99653 * 5.07933 * 14 4 3 16 16 C 1.50704 * 120.00195 * 185.07373 * 14 4 3 17 17 H 1.09000 * 109.54562 * 326.62561 * 16 14 4 18 18 C 1.53174 * 109.53888 * 86.89640 * 16 14 4 19 19 C 1.53100 * 109.16254 * 176.84742 * 18 16 14 20 20 O 1.42905 * 109.40993 * 302.38985 * 19 18 16 21 21 C 1.42909 * 114.10115 * 61.15861 * 20 19 18 22 22 H 1.08995 * 109.47992 * 58.82119 * 21 20 19 23 23 C 1.52994 * 109.47887 * 178.85499 * 21 20 19 24 24 C 1.52998 * 109.47652 * 294.94032 * 23 21 20 25 25 C 1.53089 * 109.41077 * 298.83930 * 21 20 19 26 26 H 1.08005 * 119.99854 * 5.56976 * 1 2 3 27 27 H 1.07998 * 120.00366 * 185.57227 * 1 2 3 28 28 H 1.08007 * 120.00212 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47185 * 3.72439 * 3 2 1 30 30 H 1.08998 * 109.47060 * 243.71830 * 3 2 1 31 31 H 1.09002 * 109.46463 * 327.51301 * 5 4 3 32 32 H 1.08995 * 109.47314 * 207.51653 * 5 4 3 33 33 H 0.96997 * 120.00049 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.52182 * 296.74803 * 18 16 14 35 35 H 1.08997 * 109.52902 * 56.94230 * 18 16 14 36 36 H 1.08997 * 109.48123 * 182.40430 * 19 18 16 37 37 H 1.08999 * 109.49003 * 62.37393 * 19 18 16 38 38 H 1.09001 * 109.47150 * 54.94548 * 23 21 20 39 39 H 1.09000 * 109.47088 * 174.93702 * 23 21 20 40 40 H 1.09007 * 109.46874 * 59.99970 * 24 23 21 41 41 H 1.08992 * 109.47163 * 179.97438 * 24 23 21 42 42 H 1.09000 * 109.46743 * 300.00405 * 24 23 21 43 43 H 1.08997 * 109.52425 * 297.70265 * 25 21 20 44 44 H 1.09000 * 109.57344 * 177.54534 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9717 1.3445 1.1488 5 6 4.3262 0.7989 1.0308 6 6 5.2546 1.8668 0.5123 7 1 4.8738 2.8534 0.2931 8 6 6.5902 1.5846 0.3189 9 7 7.0540 0.3834 0.5864 10 14 7.7394 2.9062 -0.3310 11 1 6.9752 4.1592 -0.5570 12 1 8.8171 3.1559 0.6598 13 1 8.3396 2.4540 -1.6118 14 6 2.5613 1.8828 2.3142 15 8 1.4126 2.2506 2.4410 16 6 3.5297 2.0277 3.4598 17 1 4.2400 1.2011 3.4435 18 6 4.2824 3.3553 3.3296 19 6 5.2058 3.5301 4.5382 20 8 4.4319 3.4797 5.7384 21 6 3.7432 2.2433 5.9372 22 1 4.4642 1.4263 5.9663 23 6 2.9755 2.2939 7.2596 24 6 3.9661 2.3951 8.4211 25 6 2.7612 2.0169 4.7849 26 1 -0.5400 0.9309 -0.0908 27 1 -0.5401 -0.9308 0.0908 28 1 1.8500 -0.9353 -0.0004 29 1 1.3570 2.1325 0.0668 30 1 2.6391 1.3922 -0.9214 31 1 4.3195 -0.0437 0.3393 32 1 4.6692 0.4630 2.0094 33 1 7.9936 0.1848 0.4500 34 1 4.8761 3.3493 2.4154 35 1 3.5677 4.1775 3.2954 36 1 5.7123 4.4930 4.4724 37 1 5.9460 2.7301 4.5490 38 1 2.3187 3.1638 7.2653 39 1 2.3793 1.3879 7.3684 40 1 4.5623 3.3012 8.3123 41 1 3.4190 2.4315 9.3631 42 1 4.6229 1.5251 8.4153 43 1 2.0157 2.8121 4.7800 44 1 2.2660 1.0541 4.9109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292192984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -83.038832 kcal Electronic energy + Delta-G solvation = -23401.031131 eV Core-core repulsion = 20125.188998 eV Total energy + Delta-G solvation = -3275.842133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90737 -38.36490 -35.46445 -33.99848 -33.66253 -32.83708 -32.09658 -29.52628 -27.51943 -26.56195 -24.71381 -23.45336 -22.84594 -21.48715 -20.34103 -19.42054 -18.12007 -16.58614 -16.53156 -16.13212 -15.85430 -15.18121 -14.65409 -14.43375 -14.34123 -14.01111 -13.57141 -13.48616 -13.31390 -12.97173 -12.71317 -12.50006 -12.21337 -11.79243 -11.61329 -11.41717 -11.31339 -11.14040 -11.02288 -10.93508 -10.82207 -10.73409 -10.63098 -10.22752 -10.13811 -9.89406 -9.75814 -9.39966 -9.15388 -8.73927 -8.55729 -7.76678 -6.24929 -4.31807 2.56159 3.16332 3.26023 3.28562 3.39347 3.99581 4.07010 4.27517 4.90518 5.07307 5.10098 5.19393 5.28115 5.31913 5.37678 5.46328 5.54182 5.58097 5.63355 5.75056 5.82834 5.92481 5.97953 6.01551 6.10019 6.10507 6.17592 6.19889 6.30529 6.32648 6.34926 6.46830 6.63256 6.72890 6.78004 6.93069 7.12187 7.15497 7.49515 7.56525 7.69621 7.98979 8.32135 8.73521 9.00915 9.35605 10.81673 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.007111 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.618157 B = 3936.430363 C = 5847.012074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C 0.144 3.856 4 N -0.591 5.591 5 C 0.235 3.765 6 C -0.534 4.534 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.522 3.478 15 O -0.572 6.572 16 C -0.101 4.101 17 H 0.098 0.902 18 C -0.145 4.145 19 C 0.066 3.934 20 O -0.383 6.383 21 C 0.092 3.908 22 H 0.056 0.944 23 C -0.115 4.115 24 C -0.148 4.148 25 C -0.131 4.131 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 1.133 7.266 8.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C 0.021 3.979 4 N -0.321 5.321 5 C 0.115 3.885 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.719 3.281 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.122 4.122 17 H 0.116 0.884 18 C -0.183 4.183 19 C -0.010 4.010 20 O -0.303 6.303 21 C 0.034 3.966 22 H 0.074 0.926 23 C -0.152 4.152 24 C -0.206 4.206 25 C -0.169 4.169 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.491 1.355 7.432 9.340 hybrid contribution 0.901 0.203 -0.813 1.230 sum -4.591 1.559 6.620 8.205 Atomic orbital electron populations 1.23711 0.95869 1.01335 1.01715 1.23393 0.96121 0.99420 0.98815 1.20348 0.92760 0.94712 0.90074 1.48205 1.15600 1.58219 1.10067 1.19496 0.76052 0.94617 0.98288 1.21487 0.93075 0.98001 1.44740 0.91860 1.24929 0.98078 0.95539 0.95119 1.69925 1.15154 1.19802 1.47879 0.86534 0.80830 0.81914 0.78834 1.19551 1.20725 1.20830 1.20423 0.87884 0.76686 0.83928 1.90574 1.19844 1.51853 1.82970 1.21250 0.97379 1.00711 0.92825 0.88388 1.22193 0.99517 0.95534 1.01085 1.22550 0.92764 1.02100 0.83603 1.87848 1.64654 1.36046 1.41707 1.22105 0.93309 0.86946 0.94223 0.92556 1.21525 0.98066 1.02559 0.93068 1.21714 0.99306 1.02304 0.97259 1.22073 0.98476 1.03060 0.93307 0.88757 0.89038 0.87591 0.90684 0.89759 0.94718 0.94239 0.92520 0.87502 0.91755 0.89026 0.92785 0.91212 0.90862 0.91962 0.93122 0.93003 0.90268 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.31 29.02 0.42 -2.40 16 2 C -0.16 -2.65 9.85 -36.02 -0.35 -3.01 16 3 C 0.14 2.70 5.84 -5.19 -0.03 2.67 16 4 N -0.59 -12.31 2.44 -176.43 -0.43 -12.74 16 5 C 0.24 5.37 4.98 -5.19 -0.03 5.34 16 6 C -0.53 -13.06 7.60 -34.44 -0.26 -13.32 16 7 H 0.06 1.58 7.52 -52.49 -0.39 1.18 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -23.54 13.29 55.43 0.74 -22.81 16 10 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.52 10.90 6.76 -10.98 -0.07 10.82 16 15 O -0.57 -12.95 15.66 5.56 0.09 -12.87 16 16 C -0.10 -1.86 2.03 -91.59 -0.19 -2.05 16 17 H 0.10 1.89 5.90 -51.93 -0.31 1.58 16 18 C -0.15 -2.62 5.40 -26.59 -0.14 -2.76 16 19 C 0.07 1.06 6.84 37.21 0.25 1.31 16 20 O -0.38 -6.13 9.94 -35.23 -0.35 -6.48 16 21 C 0.09 1.34 2.64 -26.69 -0.07 1.27 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 C -0.11 -1.39 5.64 -26.74 -0.15 -1.54 16 24 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 25 C -0.13 -2.14 4.31 -26.59 -0.11 -2.26 16 26 H 0.09 1.38 7.86 -52.48 -0.41 0.97 16 27 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.07 1.42 7.10 -51.93 -0.37 1.05 16 30 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 31 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.94 5.81 -51.93 -0.30 0.63 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.11 2.13 5.88 -51.93 -0.31 1.82 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.73 7.83 -51.92 -0.41 0.33 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.40 7.76 -51.93 -0.40 0.99 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -27.42 353.20 -7.65 -35.07 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.52 Total: 5.44 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.48 Total: -5.61 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.31 Total: -35.54 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.26 Total: -19.34 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.42 -7.65 -35.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.967 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds