Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50701 * 120.00073 * 2 1 4 4 N 1.46499 * 109.46863 * 123.72430 * 3 2 1 5 5 C 1.46508 * 120.00187 * 88.11239 * 4 3 2 6 6 C 1.50704 * 109.47074 * 87.50974 * 5 4 3 7 7 H 1.08002 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99842 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99860 * 179.72567 * 8 6 5 11 11 H 1.48496 * 109.46916 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46741 * 120.00590 * 10 8 6 13 13 H 1.48497 * 109.47035 * 240.00383 * 10 8 6 14 14 C 1.34775 * 120.00266 * 268.10609 * 4 3 2 15 15 O 1.21279 * 119.99653 * 5.07933 * 14 4 3 16 16 C 1.50704 * 120.00195 * 185.07373 * 14 4 3 17 17 H 1.09000 * 109.54562 * 326.62561 * 16 14 4 18 18 C 1.53174 * 109.53888 * 86.89640 * 16 14 4 19 19 C 1.53100 * 109.16254 * 176.84742 * 18 16 14 20 20 O 1.42905 * 109.40993 * 302.38985 * 19 18 16 21 21 C 1.42909 * 114.10115 * 61.15861 * 20 19 18 22 22 H 1.08995 * 109.47992 * 58.82119 * 21 20 19 23 23 C 1.52994 * 109.47887 * 178.85499 * 21 20 19 24 24 C 1.52998 * 109.47652 * 294.94032 * 23 21 20 25 25 C 1.53089 * 109.41077 * 298.83930 * 21 20 19 26 26 H 1.08005 * 119.99854 * 5.56976 * 1 2 3 27 27 H 1.07998 * 120.00366 * 185.57227 * 1 2 3 28 28 H 1.08007 * 120.00212 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47185 * 3.72439 * 3 2 1 30 30 H 1.08998 * 109.47060 * 243.71830 * 3 2 1 31 31 H 1.09002 * 109.46463 * 327.51301 * 5 4 3 32 32 H 1.08995 * 109.47314 * 207.51653 * 5 4 3 33 33 H 0.96997 * 120.00049 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.52182 * 296.74803 * 18 16 14 35 35 H 1.08997 * 109.52902 * 56.94230 * 18 16 14 36 36 H 1.08997 * 109.48123 * 182.40430 * 19 18 16 37 37 H 1.08999 * 109.49003 * 62.37393 * 19 18 16 38 38 H 1.09001 * 109.47150 * 54.94548 * 23 21 20 39 39 H 1.09000 * 109.47088 * 174.93702 * 23 21 20 40 40 H 1.09007 * 109.46874 * 59.99970 * 24 23 21 41 41 H 1.08992 * 109.47163 * 179.97438 * 24 23 21 42 42 H 1.09000 * 109.46743 * 300.00405 * 24 23 21 43 43 H 1.08997 * 109.52425 * 297.70265 * 25 21 20 44 44 H 1.09000 * 109.57344 * 177.54534 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9717 1.3445 1.1488 5 6 4.3262 0.7989 1.0308 6 6 5.2546 1.8668 0.5123 7 1 4.8738 2.8534 0.2931 8 6 6.5902 1.5846 0.3189 9 7 7.0540 0.3834 0.5864 10 14 7.7394 2.9062 -0.3310 11 1 6.9752 4.1592 -0.5570 12 1 8.8171 3.1559 0.6598 13 1 8.3396 2.4540 -1.6118 14 6 2.5613 1.8828 2.3142 15 8 1.4126 2.2506 2.4410 16 6 3.5297 2.0277 3.4598 17 1 4.2400 1.2011 3.4435 18 6 4.2824 3.3553 3.3296 19 6 5.2058 3.5301 4.5382 20 8 4.4319 3.4797 5.7384 21 6 3.7432 2.2433 5.9372 22 1 4.4642 1.4263 5.9663 23 6 2.9755 2.2939 7.2596 24 6 3.9661 2.3951 8.4211 25 6 2.7612 2.0169 4.7849 26 1 -0.5400 0.9309 -0.0908 27 1 -0.5401 -0.9308 0.0908 28 1 1.8500 -0.9353 -0.0004 29 1 1.3570 2.1325 0.0668 30 1 2.6391 1.3922 -0.9214 31 1 4.3195 -0.0437 0.3393 32 1 4.6692 0.4630 2.0094 33 1 7.9936 0.1848 0.4500 34 1 4.8761 3.3493 2.4154 35 1 3.5677 4.1775 3.2954 36 1 5.7123 4.4930 4.4724 37 1 5.9460 2.7301 4.5490 38 1 2.3187 3.1638 7.2653 39 1 2.3793 1.3879 7.3684 40 1 4.5623 3.3012 8.3123 41 1 3.4190 2.4315 9.3631 42 1 4.6229 1.5251 8.4153 43 1 2.0157 2.8121 4.7800 44 1 2.2660 1.0541 4.9109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292192984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -96.747093 kcal Electronic energy + Delta-G solvation = -23401.625566 eV Core-core repulsion = 20125.188998 eV Total energy + Delta-G solvation = -3276.436567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42755 -39.78767 -37.11688 -35.45952 -34.86210 -34.45943 -33.69642 -30.71753 -29.33392 -28.04990 -26.06453 -25.00448 -24.43583 -22.66969 -21.62626 -20.77031 -19.76379 -18.48495 -18.12741 -17.39441 -17.35899 -16.65661 -16.39723 -15.95212 -15.65914 -15.36919 -14.90508 -14.74637 -14.53028 -14.35114 -14.21815 -14.08285 -13.68671 -13.53478 -13.04599 -12.75911 -12.72215 -12.69608 -12.61271 -12.27597 -12.20493 -12.07155 -11.92052 -11.74616 -11.66809 -11.50086 -11.27899 -10.86327 -10.57048 -10.46700 -10.13165 -9.50234 -8.19393 -6.32009 1.25320 1.40560 1.45423 1.54330 1.72132 2.36413 2.48701 2.86259 3.11575 3.61241 3.74044 3.84099 3.97578 4.02816 4.17580 4.20627 4.24418 4.36392 4.42517 4.48776 4.56532 4.57618 4.72001 4.76586 4.81055 4.86830 4.92361 4.96017 4.99976 5.12304 5.13901 5.18069 5.20626 5.29472 5.36140 5.49344 5.64757 5.65965 5.76796 5.86735 6.05884 6.31408 6.56691 6.81524 7.28994 7.41345 8.86780 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011294 B = 0.007111 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.618157 B = 3936.430363 C = 5847.012074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.182 4.182 3 C 0.142 3.858 4 N -0.594 5.594 5 C 0.251 3.749 6 C -0.534 4.534 7 H 0.056 0.944 8 C 0.027 3.973 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.282 1.282 14 C 0.518 3.482 15 O -0.591 6.591 16 C -0.099 4.099 17 H 0.089 0.911 18 C -0.139 4.139 19 C 0.071 3.929 20 O -0.387 6.387 21 C 0.091 3.909 22 H 0.060 0.940 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.123 4.123 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 1.371 8.141 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.323 5.323 5 C 0.130 3.870 6 C -0.572 4.572 7 H 0.074 0.926 8 C -0.174 4.174 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.208 1.208 14 C 0.307 3.693 15 O -0.473 6.473 16 C -0.120 4.120 17 H 0.107 0.893 18 C -0.178 4.178 19 C -0.006 4.006 20 O -0.307 6.307 21 C 0.033 3.967 22 H 0.078 0.922 23 C -0.150 4.150 24 C -0.202 4.202 25 C -0.161 4.161 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.765 1.596 8.302 10.233 hybrid contribution 0.886 0.110 -1.121 1.433 sum -4.879 1.706 7.181 8.848 Atomic orbital electron populations 1.23953 0.95168 1.02707 0.98412 1.23241 0.96789 0.98270 1.01855 1.20428 0.92494 0.95939 0.89199 1.48231 1.15200 1.57985 1.10856 1.19164 0.76881 0.93756 0.97169 1.21579 0.93483 0.97842 1.44336 0.92606 1.25551 0.99340 0.97145 0.95315 1.70010 1.15565 1.21308 1.48963 0.85645 0.79081 0.79674 0.78191 1.19344 1.20128 1.20843 1.20827 0.88004 0.76136 0.84339 1.90550 1.20668 1.52758 1.83357 1.21268 0.96976 1.00597 0.93189 0.89309 1.22106 0.99384 0.94979 1.01285 1.22540 0.92178 1.03150 0.82706 1.87858 1.64668 1.36808 1.41319 1.22252 0.93076 0.86619 0.94747 0.92170 1.21551 0.98149 1.03292 0.91965 1.21687 0.99102 1.01928 0.97531 1.22029 0.98365 1.02945 0.92757 0.88426 0.86446 0.87594 0.91044 0.90098 0.96317 0.95100 0.92371 0.89602 0.92291 0.87116 0.92932 0.91478 0.89237 0.93052 0.91282 0.92595 0.91524 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 14.31 67.79 0.97 -3.66 16 2 C -0.18 -6.03 9.85 25.66 0.25 -5.78 16 3 C 0.14 5.37 5.84 85.63 0.50 5.87 16 4 N -0.59 -25.11 2.44 -830.48 -2.03 -27.14 16 5 C 0.25 11.70 4.98 85.63 0.43 12.12 16 6 C -0.53 -26.38 7.60 25.60 0.19 -26.19 16 7 H 0.06 2.81 7.52 -2.91 -0.02 2.79 16 8 C 0.03 1.36 5.46 84.65 0.46 1.82 16 9 N -0.92 -48.88 13.29 21.45 0.28 -48.59 16 10 Si 0.95 40.19 29.54 68.60 2.03 42.21 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 14 C 0.52 21.80 6.76 87.66 0.59 22.40 16 15 O -0.59 -26.83 15.66 -3.03 -0.05 -26.87 16 16 C -0.10 -3.70 2.03 -11.42 -0.02 -3.72 16 17 H 0.09 3.48 5.90 -2.39 -0.01 3.46 16 18 C -0.14 -5.03 5.40 30.69 0.17 -4.86 16 19 C 0.07 2.19 6.84 72.02 0.49 2.68 16 20 O -0.39 -11.87 9.94 -148.98 -1.48 -13.35 16 21 C 0.09 2.53 2.64 30.62 0.08 2.61 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 C -0.11 -2.50 5.64 30.59 0.17 -2.32 16 24 C -0.15 -2.84 9.81 71.98 0.71 -2.14 16 25 C -0.12 -3.94 4.31 30.68 0.13 -3.81 16 26 H 0.10 2.69 7.86 -2.91 -0.02 2.67 16 27 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 28 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.07 2.72 7.10 -2.39 -0.02 2.70 16 30 H 0.08 3.04 8.09 -2.39 -0.02 3.02 16 31 H 0.02 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.03 1.50 5.81 -2.39 -0.01 1.49 16 33 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.09 3.46 5.88 -2.39 -0.01 3.45 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 1.11 7.83 -2.38 -0.02 1.10 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 2.32 7.76 -2.39 -0.02 2.30 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -57.33 353.20 4.83 -52.49 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.95 Total: 26.23 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.13 Total: -4.98 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.74 Total: -75.73 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.53 Total: -40.23 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -57.33 4.83 -52.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292192984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.253 kcal (2) G-P(sol) polarization free energy of solvation -57.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds