Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 120.00224 * 2 1 4 4 N 1.46495 * 109.46823 * 125.00120 * 3 2 1 5 5 C 1.46498 * 120.00398 * 270.00201 * 4 3 2 6 6 C 1.50702 * 109.46739 * 270.00261 * 5 4 3 7 7 H 1.08000 * 120.00229 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99658 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99859 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00232 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46839 * 89.99444 * 10 8 6 12 12 H 1.48497 * 109.47035 * 209.99776 * 10 8 6 13 13 H 1.48495 * 109.46840 * 329.99548 * 10 8 6 14 14 C 1.34781 * 119.99922 * 90.00003 * 4 3 2 15 15 O 1.21284 * 120.00074 * 179.97438 * 14 4 3 16 16 C 1.50704 * 120.00045 * 0.02562 * 14 4 3 17 17 C 1.52996 * 109.47185 * 179.97438 * 16 14 4 18 18 C 1.52994 * 109.47056 * 179.97438 * 17 16 14 19 19 H 1.08997 * 109.82674 * 54.43384 * 18 17 16 20 20 C 1.54390 * 109.83034 * 175.41436 * 18 17 16 21 21 C 1.55307 * 102.25162 * 140.86954 * 20 18 17 22 22 C 1.54947 * 100.94272 * 325.86753 * 21 20 18 23 23 H 1.09006 * 110.39223 * 277.48540 * 22 21 20 24 24 C 1.52997 * 110.30874 * 155.36267 * 22 21 20 25 25 O 1.43244 * 109.83180 * 293.54590 * 18 17 16 26 26 H 1.08005 * 119.99357 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.00101 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00102 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46526 * 5.00194 * 3 2 1 30 30 H 1.09001 * 109.47247 * 245.00233 * 3 2 1 31 31 H 1.08999 * 109.47085 * 29.99698 * 5 4 3 32 32 H 1.08990 * 109.47522 * 150.00236 * 5 4 3 33 33 H 0.96997 * 120.00062 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46802 * 59.99517 * 16 14 4 35 35 H 1.08998 * 109.46556 * 299.99838 * 16 14 4 36 36 H 1.08998 * 109.47174 * 59.99710 * 17 16 14 37 37 H 1.09003 * 109.47331 * 300.00299 * 17 16 14 38 38 H 1.09003 * 110.84436 * 259.05888 * 20 18 17 39 39 H 1.09002 * 110.84678 * 22.47293 * 20 18 17 40 40 H 1.09000 * 111.11809 * 207.94650 * 21 20 18 41 41 H 1.09002 * 111.12451 * 83.78622 * 21 20 18 42 42 H 1.09002 * 109.47153 * 302.83012 * 24 22 21 43 43 H 1.09001 * 109.46832 * 182.83203 * 24 22 21 44 44 H 1.09004 * 109.47261 * 62.83184 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8445 3.3435 2.4804 7 1 3.3034 3.8369 1.6365 8 6 2.5187 4.0665 3.6083 9 7 2.7683 5.3568 3.6570 10 14 1.7242 3.2131 5.0678 11 1 2.7803 2.7228 5.9895 12 1 0.8474 4.1731 5.7853 13 1 0.9134 2.0651 4.5886 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8885 1.9189 16 6 4.6973 0.3182 -0.3484 17 6 6.1537 -0.1395 -0.2478 18 6 6.6078 -0.6962 -1.5986 19 1 6.4328 0.0426 -2.3806 20 6 8.1085 -1.0540 -1.5398 21 6 8.1652 -2.3727 -2.3583 22 6 6.7984 -3.0046 -1.9930 23 1 6.8641 -3.5257 -1.0378 24 6 6.3480 -3.9683 -3.0927 25 8 5.8875 -1.8982 -1.8958 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4027 -0.9314 31 1 1.4889 1.6966 2.5460 32 1 3.0991 1.3601 3.2259 33 1 2.5388 5.8656 4.4503 34 1 4.6126 1.0952 -1.1081 35 1 4.0680 -0.5284 -0.6229 36 1 6.2387 -0.9163 0.5121 37 1 6.7826 0.7074 0.0266 38 1 8.7110 -0.2781 -2.0120 39 1 8.4281 -1.2184 -0.5107 40 1 8.9905 -3.0040 -2.0292 41 1 8.2307 -2.1691 -3.4271 42 1 6.2977 -3.4370 -4.0431 43 1 5.3636 -4.3661 -2.8463 44 1 7.0618 -4.7882 -3.1721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292225030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -75.072509 kcal Electronic energy + Delta-G solvation = -22421.955804 eV Core-core repulsion = 19146.459117 eV Total energy + Delta-G solvation = -3275.496687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88290 -39.00467 -35.73265 -33.85566 -33.07186 -32.38611 -32.06431 -30.75126 -28.40770 -26.38360 -25.39163 -23.45067 -21.78476 -21.66070 -20.42168 -19.91527 -18.22557 -17.13728 -16.87481 -16.49654 -15.82904 -15.56953 -14.96656 -14.42391 -14.39399 -14.09015 -13.81823 -13.56166 -13.20444 -12.98496 -12.81338 -12.40314 -12.36113 -12.14747 -11.86250 -11.71403 -11.65336 -11.51347 -11.21246 -11.05255 -10.95205 -10.90749 -10.79210 -10.63766 -10.46907 -10.10482 -9.54811 -9.52248 -9.20286 -8.90623 -8.55700 -7.67716 -6.05832 -4.04017 2.43163 3.31882 3.37864 3.40102 3.44681 3.63625 3.96930 4.33803 4.42754 4.54347 4.64035 4.94761 5.00252 5.07936 5.15254 5.20205 5.27327 5.33659 5.37426 5.39659 5.40369 5.53026 5.57849 5.61325 5.67500 5.77024 5.83623 5.92093 5.95700 5.97756 6.01385 6.20354 6.31171 6.43068 6.76944 6.78510 6.91155 7.00486 7.02451 7.42893 7.65487 8.32250 8.50929 8.96669 9.06416 9.55114 11.07622 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.003928 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.352932 B = 7126.002263 C = 7916.607974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.137 3.863 4 N -0.591 5.591 5 C 0.216 3.784 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.135 4.135 17 C -0.111 4.111 18 C 0.081 3.919 19 H 0.080 0.920 20 C -0.152 4.152 21 C -0.152 4.152 22 C 0.074 3.926 23 H 0.068 0.932 24 C -0.150 4.150 25 O -0.373 6.373 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -16.563 -14.691 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.185 4.185 3 C 0.013 3.987 4 N -0.322 5.322 5 C 0.096 3.904 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.294 3.706 15 O -0.421 6.421 16 C -0.175 4.175 17 C -0.149 4.149 18 C 0.023 3.977 19 H 0.098 0.902 20 C -0.190 4.190 21 C -0.190 4.190 22 C 0.016 3.984 23 H 0.086 0.914 24 C -0.207 4.207 25 O -0.293 6.293 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.368 -16.375 -14.076 22.251 hybrid contribution -0.298 -0.217 0.859 0.935 sum 5.070 -16.592 -13.217 21.811 Atomic orbital electron populations 1.23822 0.95862 1.01736 1.00988 1.23470 0.96374 0.99195 0.99511 1.20595 0.93089 0.95209 0.89816 1.47909 1.10950 1.60486 1.12832 1.19627 0.94821 0.95074 0.80897 1.21348 1.40939 0.91202 1.03031 0.90777 1.24853 0.95326 0.94723 0.98130 1.69899 1.47957 1.06611 1.29279 0.86856 0.79875 0.79682 0.83352 1.19935 1.21091 1.19029 1.20508 0.81911 0.78089 0.90069 1.90651 1.52521 1.56577 1.42401 1.21640 0.97882 1.01790 0.96181 1.21717 0.95617 1.01635 0.95978 1.22810 0.90344 0.87404 0.97104 0.90236 1.23174 0.96544 0.97713 1.01549 1.23309 0.97899 0.96829 1.00916 1.22931 0.88345 0.88750 0.98353 0.91397 1.21879 1.01999 0.98517 0.98350 1.88448 1.32697 1.16189 1.91969 0.88288 0.88800 0.87633 0.89403 0.90337 0.95341 0.94694 0.92615 0.89621 0.88999 0.90924 0.90152 0.90038 0.90124 0.90190 0.90439 0.92029 0.91883 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 14.32 29.02 0.42 -1.99 16 2 C -0.17 -2.38 9.74 -36.02 -0.35 -2.73 16 3 C 0.14 2.25 5.65 -5.19 -0.03 2.23 16 4 N -0.59 -12.53 2.44 -176.43 -0.43 -12.96 16 5 C 0.22 5.46 4.23 -5.19 -0.02 5.44 16 6 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 7 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 10 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 14 C 0.51 10.60 7.67 -10.98 -0.08 10.51 16 15 O -0.54 -13.65 15.56 5.55 0.09 -13.56 16 16 C -0.13 -2.07 4.16 -27.88 -0.12 -2.18 16 17 C -0.11 -1.57 4.07 -26.74 -0.11 -1.68 16 18 C 0.08 0.92 3.52 -26.01 -0.09 0.83 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 20 C -0.15 -1.40 6.55 -24.78 -0.16 -1.56 16 21 C -0.15 -1.20 6.57 -24.48 -0.16 -1.36 16 22 C 0.07 0.70 4.07 -25.70 -0.10 0.60 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.15 -1.17 9.62 37.16 0.36 -0.81 16 25 O -0.37 -4.56 10.32 -35.23 -0.36 -4.92 16 26 H 0.10 1.25 7.84 -52.48 -0.41 0.84 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.11 1.45 7.83 -52.49 -0.41 1.04 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.08 1.10 6.44 -51.93 -0.33 0.77 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 35 H 0.09 1.30 7.52 -51.93 -0.39 0.91 16 36 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.06 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -34.36 358.34 -7.80 -42.16 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.70 Total: 0.25 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.90 Total: -6.44 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.34 Total: -40.26 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.28 Total: -18.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.36 -7.80 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292225030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.910 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds