Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00288 * 2 1 4 4 N 1.46500 * 109.47031 * 125.00249 * 3 2 1 5 5 C 1.46500 * 119.99905 * 269.99816 * 4 3 2 6 6 C 1.50699 * 109.47273 * 270.00448 * 5 4 3 7 7 H 1.07995 * 119.99701 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99752 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00529 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99713 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46990 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46645 * 120.00122 * 10 8 6 13 13 H 1.48492 * 109.47125 * 240.00214 * 10 8 6 14 14 C 1.34770 * 120.00179 * 90.00410 * 4 3 2 15 15 O 1.21277 * 120.00158 * 180.02562 * 14 4 3 16 16 C 1.50701 * 120.00000 * 359.97438 * 14 4 3 17 17 C 1.52995 * 109.47403 * 180.02562 * 16 14 4 18 18 C 1.52999 * 109.47615 * 180.02562 * 17 16 14 19 19 H 1.09001 * 110.32575 * 304.20157 * 18 17 16 20 20 C 1.54481 * 110.37738 * 181.83415 * 18 17 16 21 21 C 1.54686 * 104.07969 * 217.09711 * 20 18 17 22 22 C 1.54474 * 103.97708 * 0.13251 * 21 20 18 23 23 H 1.08999 * 110.37203 * 264.96473 * 22 21 20 24 24 C 1.53006 * 110.37160 * 142.74095 * 22 21 20 25 25 O 1.44423 * 104.90570 * 23.85228 * 22 21 20 26 26 H 1.08001 * 119.99837 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99988 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99623 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46641 * 5.00122 * 3 2 1 30 30 H 1.09002 * 109.47096 * 245.00444 * 3 2 1 31 31 H 1.09004 * 109.47199 * 30.00442 * 5 4 3 32 32 H 1.08996 * 109.46911 * 149.99894 * 5 4 3 33 33 H 0.97002 * 120.00298 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47146 * 60.00304 * 16 14 4 35 35 H 1.08996 * 109.47328 * 300.00646 * 16 14 4 36 36 H 1.09002 * 109.47572 * 59.99985 * 17 16 14 37 37 H 1.09003 * 109.46942 * 299.99961 * 17 16 14 38 38 H 1.08999 * 110.50398 * 335.83001 * 20 18 17 39 39 H 1.08998 * 110.51294 * 98.40446 * 20 18 17 40 40 H 1.08998 * 110.60709 * 241.48788 * 21 20 18 41 41 H 1.08999 * 110.48836 * 118.71731 * 21 20 18 42 42 H 1.08999 * 109.46680 * 301.54793 * 24 22 21 43 43 H 1.08998 * 109.47007 * 61.54653 * 24 22 21 44 44 H 1.08996 * 109.47351 * 181.55095 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3042 3.8367 1.6368 8 6 2.5186 4.0665 3.6082 9 7 1.9592 3.4658 4.6357 10 14 2.8731 5.8994 3.6773 11 1 3.5018 6.3304 2.4029 12 1 1.6027 6.6419 3.8780 13 1 3.7957 6.1829 4.8057 14 6 4.2498 0.8661 0.9823 15 8 5.0197 0.8877 1.9191 16 6 4.6970 0.3173 -0.3481 17 6 6.1531 -0.1413 -0.2472 18 6 6.6073 -0.6978 -1.5980 19 1 5.9413 -1.4978 -1.9213 20 6 8.0620 -1.2098 -1.5072 21 6 8.6799 -0.8321 -2.8740 22 6 7.5249 -0.1340 -3.6255 23 1 7.0005 -0.8469 -4.2618 24 6 8.0601 1.0308 -4.4610 25 8 6.6473 0.3536 -2.5873 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1315 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 1.4889 1.6965 2.5460 32 1 3.0991 1.3601 3.2259 33 1 1.7297 3.9746 5.4290 34 1 4.6121 1.0937 -1.1084 35 1 4.0678 -0.5296 -0.6218 36 1 6.2377 -0.9178 0.5130 37 1 6.7825 0.7054 0.0267 38 1 8.5923 -0.7110 -0.6960 39 1 8.0785 -2.2904 -1.3655 40 1 8.9998 -1.7254 -3.4104 41 1 9.5166 -0.1467 -2.7382 42 1 8.5705 1.7405 -3.8099 43 1 8.7604 0.6522 -5.2055 44 1 7.2308 1.5294 -4.9627 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292225033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = -78.929221 kcal Electronic energy + Delta-G solvation = -22345.080828 eV Core-core repulsion = 19069.416901 eV Total energy + Delta-G solvation = -3275.663927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.78561 -38.90612 -35.63737 -33.84637 -33.07443 -32.31934 -31.99878 -30.67043 -27.87420 -26.28121 -25.27202 -23.48502 -22.11364 -21.24933 -20.81431 -19.86593 -18.21509 -16.66179 -16.48713 -16.22872 -16.05131 -15.46220 -14.88947 -14.76476 -14.39901 -14.07421 -13.90792 -13.43616 -13.22553 -12.75133 -12.59661 -12.43762 -12.31295 -12.00031 -11.72986 -11.58633 -11.45870 -11.28135 -11.12222 -10.99417 -10.85636 -10.80986 -10.74974 -10.60288 -10.52376 -10.14022 -9.78382 -9.56588 -9.13553 -8.79256 -8.39257 -7.60915 -5.99768 -4.04130 2.49736 3.32779 3.40013 3.44185 3.54214 3.72971 4.06620 4.46127 4.48503 4.54279 4.76245 4.84396 5.04432 5.10586 5.20261 5.26034 5.30438 5.34347 5.38852 5.44477 5.47847 5.52821 5.64612 5.66495 5.75137 5.75664 5.86658 5.95540 5.96574 6.00074 6.06316 6.23815 6.32324 6.45553 6.83371 6.87311 6.96366 7.15805 7.51082 7.62907 7.97434 8.29398 8.50030 8.96365 9.18214 9.60999 11.08334 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.004038 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.200037 B = 6933.308700 C = 7726.422569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.165 4.165 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.137 4.137 17 C -0.096 4.096 18 C 0.076 3.924 19 H 0.067 0.933 20 C -0.152 4.152 21 C -0.151 4.151 22 C 0.068 3.932 23 H 0.065 0.935 24 C -0.147 4.147 25 O -0.364 6.364 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -10.515 -17.751 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.185 4.185 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.127 3.873 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.292 3.708 15 O -0.422 6.422 16 C -0.177 4.177 17 C -0.134 4.134 18 C 0.018 3.982 19 H 0.085 0.915 20 C -0.190 4.190 21 C -0.189 4.189 22 C 0.010 3.990 23 H 0.083 0.917 24 C -0.204 4.204 25 O -0.284 6.284 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.276 -10.235 -17.037 21.165 hybrid contribution 0.099 0.753 0.094 0.766 sum 7.374 -9.482 -16.943 20.769 Atomic orbital electron populations 1.23804 0.95861 1.01691 1.00931 1.23436 0.96359 0.99092 0.99593 1.20575 0.93123 0.95154 0.89951 1.48225 1.10658 1.60290 1.13451 1.19253 0.95298 0.93737 0.78981 1.21498 1.40158 0.93413 1.01230 0.92406 1.24933 0.95124 0.98721 0.95356 1.69948 1.42308 1.36011 1.05191 0.86460 0.77880 0.85066 0.78132 1.19780 1.20999 1.20900 1.20431 0.82181 0.78456 0.89776 1.90652 1.52578 1.56692 1.42288 1.21667 0.97160 1.01994 0.96927 1.21400 0.95683 1.02327 0.93953 1.23064 0.95599 0.89759 0.89776 0.91492 1.23014 0.96276 1.01676 0.97991 1.23027 0.98933 1.00859 0.96061 1.22934 0.89981 0.95770 0.90285 0.91698 1.21801 1.01239 0.97938 0.99429 1.89195 1.67093 1.40131 1.31991 0.88862 0.88316 0.87864 0.89613 0.90607 0.95101 0.93977 0.92846 0.88937 0.89975 0.90006 0.90301 0.90249 0.90670 0.90860 0.90639 0.91716 0.91449 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 14.32 29.01 0.42 -2.06 16 2 C -0.17 -2.43 9.74 -36.03 -0.35 -2.78 16 3 C 0.14 2.30 5.65 -5.19 -0.03 2.27 16 4 N -0.60 -12.98 2.44 -176.44 -0.43 -13.41 16 5 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 6 C -0.52 -15.23 9.39 -34.44 -0.32 -15.56 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 10 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.50 10.77 7.67 -10.99 -0.08 10.69 16 15 O -0.54 -13.97 15.56 5.56 0.09 -13.88 16 16 C -0.14 -2.14 4.17 -27.89 -0.12 -2.25 16 17 C -0.10 -1.38 4.14 -26.73 -0.11 -1.49 16 18 C 0.08 0.88 3.27 -25.95 -0.08 0.79 16 19 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.15 -1.47 6.64 -25.07 -0.17 -1.64 16 21 C -0.15 -1.28 6.65 -25.07 -0.17 -1.45 16 22 C 0.07 0.66 3.92 -25.95 -0.10 0.56 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.15 -1.24 9.52 37.16 0.35 -0.89 16 25 O -0.36 -4.73 10.69 -35.23 -0.38 -5.10 16 26 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.10 1.31 7.84 -52.49 -0.41 0.89 16 28 H 0.10 1.41 7.83 -52.49 -0.41 1.00 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.08 1.10 6.44 -51.93 -0.33 0.77 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.09 1.41 7.17 -51.93 -0.37 1.04 16 35 H 0.08 1.08 7.77 -51.93 -0.40 0.68 16 36 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -33.74 361.91 -8.16 -41.90 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.72 Total: -0.33 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.89 Total: -5.53 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.31 Total: -39.79 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.29 Total: -18.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.74 -8.16 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292225033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.029 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds