Wall clock time and date at job start Tue Mar 31 2020 05:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 120.00196 * 2 1 4 4 N 1.46494 * 109.46944 * 125.00151 * 3 2 1 5 5 C 1.46501 * 120.00124 * 270.00168 * 4 3 2 6 6 C 1.50706 * 109.47092 * 269.99964 * 5 4 3 7 7 H 1.08000 * 119.99726 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99844 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00264 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99646 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46718 * 90.00540 * 10 8 6 12 12 H 1.48497 * 109.47335 * 209.99962 * 10 8 6 13 13 H 1.48498 * 109.47404 * 330.00544 * 10 8 6 14 14 C 1.34773 * 120.00235 * 89.99781 * 4 3 2 15 15 O 1.21284 * 120.00211 * 179.97438 * 14 4 3 16 16 C 1.50704 * 119.99707 * 0.02562 * 14 4 3 17 17 C 1.53008 * 109.46922 * 179.97438 * 16 14 4 18 18 C 1.53000 * 109.46774 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.49255 * 54.97211 * 18 17 16 20 20 C 1.53091 * 109.47862 * 175.00257 * 18 17 16 21 21 C 1.53176 * 109.21206 * 177.62293 * 20 18 17 22 22 C 1.53174 * 109.04061 * 302.98570 * 21 20 18 23 23 C 1.53097 * 109.16185 * 56.97999 * 22 21 20 24 24 O 1.42902 * 109.41493 * 302.39739 * 23 22 21 25 25 H 1.07999 * 120.00088 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99803 * 359.97438 * 1 2 3 27 27 H 1.07992 * 119.99546 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46910 * 5.00701 * 3 2 1 29 29 H 1.08994 * 109.46849 * 245.00237 * 3 2 1 30 30 H 1.08999 * 109.47172 * 29.99627 * 5 4 3 31 31 H 1.08998 * 109.47574 * 150.00466 * 5 4 3 32 32 H 0.97005 * 120.00355 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47333 * 59.99774 * 16 14 4 34 34 H 1.08996 * 109.46995 * 299.99651 * 16 14 4 35 35 H 1.08997 * 109.46847 * 60.00033 * 17 16 14 36 36 H 1.08998 * 109.46739 * 299.99745 * 17 16 14 37 37 H 1.09002 * 109.52401 * 57.68445 * 20 18 17 38 38 H 1.09004 * 109.52068 * 297.56090 * 20 18 17 39 39 H 1.08995 * 109.54674 * 62.85906 * 21 20 18 40 40 H 1.09007 * 109.53937 * 183.03159 * 21 20 18 41 41 H 1.08995 * 109.52612 * 176.89131 * 22 21 20 42 42 H 1.09004 * 109.52214 * 297.01676 * 22 21 20 43 43 H 1.08997 * 109.47580 * 62.37620 * 23 22 21 44 44 H 1.08996 * 109.48015 * 182.39657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8445 3.3435 2.4805 7 1 3.3035 3.8369 1.6365 8 6 2.5187 4.0665 3.6083 9 7 1.9593 3.4657 4.6357 10 14 2.8732 5.8993 3.6775 11 1 1.7009 6.6500 3.1602 12 1 3.1365 6.2999 5.0830 13 1 4.0637 6.2050 2.8443 14 6 4.2497 0.8660 0.9824 15 8 5.0200 0.8885 1.9189 16 6 4.6972 0.3182 -0.3483 17 6 6.1537 -0.1396 -0.2476 18 6 6.6078 -0.6964 -1.5985 19 1 6.4393 0.0501 -2.3747 20 6 8.0986 -1.0388 -1.5344 21 6 8.5331 -1.6505 -2.8698 22 6 7.6676 -2.8802 -3.1613 23 6 6.1932 -2.4679 -3.1635 24 8 5.8629 -1.8785 -1.9042 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6213 1.4025 -0.9314 30 1 1.4889 1.6966 2.5459 31 1 3.0991 1.3602 3.2259 32 1 1.7297 3.9745 5.4291 33 1 4.6126 1.0951 -1.1081 34 1 4.0680 -0.5285 -0.6228 35 1 6.2387 -0.9164 0.5122 36 1 6.7826 0.7074 0.0266 37 1 8.2737 -1.7549 -0.7315 38 1 8.6728 -0.1318 -1.3452 39 1 8.4045 -0.9171 -3.6659 40 1 9.5808 -1.9458 -2.8118 41 1 7.9328 -3.2896 -4.1360 42 1 7.8348 -3.6340 -2.3919 43 1 6.0192 -1.7446 -3.9601 44 1 5.5702 -3.3470 -3.3282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292503393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:46 Heat of formation + Delta-G solvation = -84.086219 kcal Electronic energy + Delta-G solvation = -22425.023039 eV Core-core repulsion = 19149.135488 eV Total energy + Delta-G solvation = -3275.887551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.66667 -38.86244 -35.62907 -33.90557 -33.71091 -33.06582 -31.99068 -30.16397 -27.65750 -25.83173 -25.18734 -24.03632 -22.66131 -21.18755 -20.42930 -19.83859 -18.18006 -16.65142 -16.47113 -16.37609 -15.71869 -15.49895 -14.84445 -14.75815 -14.61434 -14.40399 -14.06369 -13.71934 -13.33704 -12.88058 -12.68371 -12.57185 -12.02528 -12.02338 -11.76068 -11.58183 -11.31258 -11.29514 -11.10647 -11.00286 -10.86708 -10.79267 -10.70201 -10.54447 -10.31762 -10.14566 -9.59137 -9.52097 -9.11529 -8.78493 -8.39679 -7.60669 -6.00170 -4.04808 2.52114 3.31987 3.38515 3.42468 3.54789 3.69878 4.06882 4.47018 4.58391 4.60841 4.67927 4.79531 5.03261 5.08056 5.23324 5.27942 5.30220 5.33606 5.42966 5.47380 5.50904 5.55832 5.59308 5.66006 5.73156 5.77401 5.84269 5.95862 5.99042 6.07716 6.09721 6.25873 6.30746 6.46898 6.86710 6.98472 7.16274 7.18790 7.51563 7.62767 7.96784 8.28783 8.50393 8.95373 9.18457 9.60144 11.07885 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003891 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.839595 B = 7194.781443 C = 8166.114427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.137 4.137 17 C -0.094 4.094 18 C 0.091 3.909 19 H 0.057 0.943 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.157 4.157 23 C 0.061 3.939 24 O -0.376 6.376 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -10.820 -17.878 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.184 4.184 3 C 0.013 3.987 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.291 3.709 15 O -0.422 6.422 16 C -0.177 4.177 17 C -0.132 4.132 18 C 0.033 3.967 19 H 0.075 0.925 20 C -0.189 4.189 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.016 4.016 24 O -0.295 6.295 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.603 -10.823 -17.037 21.236 hybrid contribution 0.250 1.071 -0.143 1.108 sum 6.853 -9.752 -17.179 20.909 Atomic orbital electron populations 1.23798 0.95864 1.01652 1.01055 1.23453 0.96361 0.99174 0.99456 1.20561 0.93081 0.95194 0.89851 1.48226 1.10670 1.60307 1.13457 1.19249 0.95319 0.93678 0.79009 1.21451 1.40346 0.93405 1.01182 0.92506 1.24937 0.95148 0.98705 0.95361 1.69937 1.42169 1.36080 1.05197 0.86511 0.78565 0.85099 0.77317 1.20685 1.21113 1.19914 1.20442 0.82216 0.78343 0.89863 1.90656 1.52628 1.56574 1.42314 1.21671 0.97812 1.01751 0.96494 1.21358 0.95551 1.01409 0.94907 1.22223 0.90246 0.86653 0.97544 0.92495 1.22209 0.96735 1.01932 0.98031 1.21588 0.99551 0.97322 0.97537 1.22194 0.96378 0.98596 1.02293 1.22520 0.95013 0.97814 0.86283 1.87996 1.62392 1.42070 1.37048 0.88856 0.88379 0.87691 0.89656 0.90765 0.95109 0.93956 0.92773 0.89922 0.88970 0.90413 0.89787 0.90859 0.90733 0.91961 0.91630 0.91220 0.91080 0.93438 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 14.32 29.01 0.42 -2.11 16 2 C -0.17 -2.46 9.74 -36.03 -0.35 -2.81 16 3 C 0.14 2.30 5.65 -5.20 -0.03 2.27 16 4 N -0.60 -12.94 2.44 -176.43 -0.43 -13.37 16 5 C 0.25 6.62 5.16 -5.19 -0.03 6.60 16 6 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.50 10.73 7.67 -10.99 -0.08 10.64 16 15 O -0.54 -13.94 15.56 5.55 0.09 -13.86 16 16 C -0.14 -2.11 4.15 -27.88 -0.12 -2.23 16 17 C -0.09 -1.36 4.22 -26.73 -0.11 -1.47 16 18 C 0.09 1.05 2.65 -26.68 -0.07 0.98 16 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.15 -1.51 5.41 -26.59 -0.14 -1.66 16 21 C -0.12 -1.00 6.03 -26.55 -0.16 -1.16 16 22 C -0.16 -1.24 6.14 -26.59 -0.16 -1.40 16 23 C 0.06 0.54 6.84 37.21 0.25 0.80 16 24 O -0.38 -4.58 9.96 -35.23 -0.35 -4.93 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.10 1.31 7.84 -52.49 -0.41 0.89 16 27 H 0.11 1.51 7.83 -52.49 -0.41 1.10 16 28 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 29 H 0.07 1.04 6.44 -51.93 -0.33 0.71 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.08 1.12 7.40 -51.93 -0.38 0.74 16 34 H 0.09 1.32 7.46 -51.93 -0.39 0.94 16 35 H 0.08 1.24 8.10 -51.93 -0.42 0.81 16 36 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -33.35 358.78 -8.33 -41.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.75 Total: -0.36 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.01 Total: -5.36 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.31 Total: -39.66 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.26 Total: -18.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.35 -8.33 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292503393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.410 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds