Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00178 * 2 1 4 4 N 1.46501 * 109.47142 * 124.99545 * 3 2 1 5 5 C 1.46493 * 120.00375 * 270.00551 * 4 3 2 6 6 C 1.50697 * 109.46786 * 269.99811 * 5 4 3 7 7 H 1.07997 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99934 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00071 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46831 * 90.00082 * 10 8 6 12 12 H 1.48495 * 109.47316 * 210.00191 * 10 8 6 13 13 H 1.48498 * 109.46963 * 330.00285 * 10 8 6 14 14 C 1.34783 * 119.99551 * 89.99805 * 4 3 2 15 15 O 1.21276 * 119.99602 * 179.97438 * 14 4 3 16 16 C 1.50695 * 120.00194 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.47492 * 179.97438 * 16 14 4 18 18 H 1.09001 * 109.46652 * 304.99738 * 17 16 14 19 19 C 1.53000 * 109.46886 * 64.99393 * 17 16 14 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.47127 * 300.00449 * 20 19 17 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 20 19 23 23 C 1.52996 * 109.47302 * 184.99611 * 17 16 14 24 24 H 1.08992 * 109.47554 * 299.99692 * 23 17 16 25 25 O 1.42903 * 109.47126 * 60.00187 * 23 17 16 26 26 H 1.07998 * 119.99972 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00098 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99584 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46513 * 5.00326 * 3 2 1 30 30 H 1.08993 * 109.47047 * 244.99927 * 3 2 1 31 31 H 1.08998 * 109.47267 * 29.99319 * 5 4 3 32 32 H 1.08998 * 109.47238 * 150.00086 * 5 4 3 33 33 H 0.96996 * 119.99692 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47446 * 59.99351 * 16 14 4 35 35 H 1.09008 * 109.46819 * 299.99341 * 16 14 4 36 36 H 1.09002 * 109.47398 * 300.00496 * 19 17 16 37 37 H 1.09001 * 109.47194 * 60.00677 * 19 17 16 38 38 H 1.08998 * 109.47533 * 59.99948 * 20 19 17 39 39 H 1.08996 * 109.47853 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47002 * 299.99574 * 21 20 19 41 41 H 1.09000 * 109.47050 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47045 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47375 * 59.99966 * 22 21 20 44 44 H 0.96699 * 114.00345 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8443 3.3435 2.4804 7 1 3.3040 3.8368 1.6369 8 6 2.5184 4.0666 3.6083 9 7 2.7670 5.3572 3.6565 10 14 1.7225 3.2136 5.0671 11 1 2.7777 2.7225 5.9894 12 1 0.8459 4.1740 5.7843 13 1 0.9112 2.0661 4.5873 14 6 4.2497 0.8660 0.9825 15 8 5.0199 0.8887 1.9190 16 6 4.6972 0.3182 -0.3481 17 6 6.1537 -0.1396 -0.2475 18 1 6.7695 0.6846 0.1125 19 6 6.2528 -1.3141 0.7280 20 6 7.7093 -1.7715 0.8292 21 6 8.2028 -2.2114 -0.5507 22 6 8.1036 -1.0368 -1.5261 23 6 6.6465 -0.5797 -1.6274 24 1 6.0308 -1.4039 -1.9873 25 8 6.5540 0.5174 -2.5385 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1315 0.0896 30 1 2.6213 1.4025 -0.9313 31 1 1.4887 1.6966 2.5459 32 1 3.0989 1.3602 3.2260 33 1 2.5381 5.8658 4.4501 34 1 4.6126 1.0950 -1.1080 35 1 4.0681 -0.5286 -0.6225 36 1 5.9016 -1.0006 1.7112 37 1 5.6370 -2.1384 0.3681 38 1 8.3249 -0.9472 1.1893 39 1 7.7800 -2.6085 1.5238 40 1 7.5873 -3.0358 -0.9108 41 1 9.2406 -2.5368 -0.4787 42 1 8.4547 -1.3504 -2.5092 43 1 8.7191 -0.2125 -1.1659 44 1 6.8509 0.3102 -3.4351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293746854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -86.108750 kcal Electronic energy + Delta-G solvation = -23047.738982 eV Core-core repulsion = 19771.763728 eV Total energy + Delta-G solvation = -3275.975254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83672 -38.45472 -35.83194 -35.41951 -33.25297 -32.41044 -32.04666 -29.69569 -28.62123 -26.55088 -25.36276 -22.82765 -22.36797 -21.10606 -20.04576 -19.73505 -18.23639 -17.27235 -16.86291 -16.38149 -15.76480 -15.05654 -14.98636 -14.61605 -14.31133 -14.16481 -13.92514 -13.55522 -13.16836 -12.91689 -12.66307 -12.51717 -12.33896 -12.00641 -11.67636 -11.60570 -11.51958 -11.31410 -11.10590 -10.90209 -10.88285 -10.65827 -10.49050 -10.34333 -10.15768 -10.05733 -9.80677 -9.50480 -9.22879 -8.81661 -8.54903 -7.66803 -6.04702 -4.02905 2.39394 3.31868 3.37870 3.39693 3.43983 3.95141 4.15796 4.43149 4.62247 4.67792 4.90379 5.08070 5.11090 5.18502 5.25918 5.30194 5.32698 5.36223 5.40792 5.48438 5.55557 5.69154 5.72578 5.73970 5.94619 5.95030 5.98324 6.04993 6.15117 6.20477 6.24229 6.32121 6.56192 6.61117 6.74011 6.76697 6.88036 7.00569 7.42917 7.61620 7.66185 8.32418 8.52038 8.98484 9.07276 9.56029 11.08821 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004839 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.121446 B = 5785.384383 C = 6406.139175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.591 5.591 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.538 6.538 16 C -0.132 4.132 17 C -0.061 4.061 18 H 0.085 0.915 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.052 0.948 25 O -0.563 6.563 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -16.287 -12.865 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.321 5.321 5 C 0.096 3.904 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.296 3.704 15 O -0.416 6.416 16 C -0.172 4.172 17 C -0.080 4.080 18 H 0.104 0.896 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.188 4.188 23 C 0.051 3.949 24 H 0.070 0.930 25 O -0.368 6.368 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.364 -15.788 -11.684 20.120 hybrid contribution -0.279 -0.582 0.233 0.686 sum 4.084 -16.370 -11.452 20.391 Atomic orbital electron populations 1.23831 0.95864 1.01773 1.00858 1.23458 0.96365 0.99122 0.99657 1.20600 0.93137 0.95157 0.89930 1.47909 1.10939 1.60503 1.12791 1.19621 0.94767 0.95105 0.80865 1.21353 1.40881 0.91210 1.03064 0.90756 1.24853 0.95333 0.94707 0.98104 1.69903 1.47978 1.06604 1.29226 0.86862 0.79865 0.79663 0.83386 1.19953 1.21115 1.19068 1.20436 0.81840 0.78141 0.89955 1.90616 1.52288 1.56382 1.42338 1.21700 0.96849 1.01952 0.96749 1.20857 0.95498 0.99252 0.92392 0.89629 1.21715 0.96095 0.96320 1.01480 1.21550 0.97015 1.00971 0.96239 1.21499 1.00944 0.97360 0.95595 1.22262 0.97761 0.99203 0.99582 1.21884 0.94620 0.88158 0.90274 0.92997 1.86586 1.88669 1.38494 1.23090 0.88808 0.88235 0.87797 0.89381 0.90282 0.95403 0.94671 0.92629 0.88532 0.90063 0.88849 0.92807 0.91664 0.92054 0.92140 0.92063 0.92108 0.91011 0.78129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 14.32 29.01 0.42 -1.89 16 2 C -0.17 -2.29 9.74 -36.03 -0.35 -2.65 16 3 C 0.14 2.22 5.65 -5.19 -0.03 2.19 16 4 N -0.59 -12.36 2.44 -176.45 -0.43 -12.79 16 5 C 0.22 5.42 4.23 -5.20 -0.02 5.40 16 6 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 7 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 10 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 11 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 14 C 0.51 10.43 7.39 -10.99 -0.08 10.35 16 15 O -0.54 -13.03 13.55 5.56 0.08 -12.96 16 16 C -0.13 -2.03 3.65 -27.89 -0.10 -2.13 16 17 C -0.06 -0.88 1.58 -90.62 -0.14 -1.02 16 18 H 0.09 1.48 7.95 -51.93 -0.41 1.07 16 19 C -0.12 -1.61 4.94 -26.73 -0.13 -1.75 16 20 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 22 C -0.15 -1.45 5.55 -26.71 -0.15 -1.60 16 23 C 0.11 1.22 2.91 -26.71 -0.08 1.14 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 O -0.56 -6.47 12.56 -35.23 -0.44 -6.92 16 26 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 28 H 0.10 1.32 7.83 -52.48 -0.41 0.91 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 31 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.10 1.49 6.80 -51.93 -0.35 1.13 16 35 H 0.08 1.05 7.78 -51.92 -0.40 0.65 16 36 H 0.09 1.58 5.95 -51.93 -0.31 1.27 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.37 2.53 9.08 45.56 0.41 2.95 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -34.40 348.86 -7.61 -42.00 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.74 Total: 3.94 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.43 Total: -8.47 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.34 Total: -40.16 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.37 Total: -19.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.40 -7.61 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293746854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.107 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds