Wall clock time and date at job start Tue Mar 31 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47446 * 2 1 4 4 C 1.52993 * 109.47446 * 179.97438 * 3 2 1 5 5 H 1.09007 * 110.02088 * 55.81252 * 4 3 2 6 6 C 1.54269 * 110.03377 * 294.42478 * 4 3 2 7 7 C 1.54894 * 104.19803 * 217.05808 * 6 4 3 8 8 C 1.54897 * 102.74620 * 37.93849 * 7 6 4 9 9 C 1.53872 * 110.07595 * 177.23315 * 4 3 2 10 10 H 1.09003 * 110.03439 * 238.59430 * 9 4 3 11 11 C 1.50697 * 110.03188 * 0.02562 * 9 4 3 12 12 O 1.21284 * 119.99994 * 84.89590 * 11 9 4 13 13 N 1.34777 * 120.00552 * 264.90379 * 11 9 4 14 14 C 1.47070 * 136.05282 * 359.62609 * 13 11 9 15 15 C 1.53237 * 88.08287 * 207.20227 * 14 13 11 16 16 O 1.42910 * 114.01331 * 87.71527 * 15 14 13 17 17 C 1.50695 * 114.33054 * 220.46821 * 15 14 13 18 18 H 1.08004 * 120.00127 * 93.75871 * 17 15 14 19 19 C 1.37885 * 120.00226 * 273.76479 * 17 15 14 20 20 N 1.31514 * 119.99629 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00079 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47359 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47035 * 119.99702 * 21 19 17 24 24 H 1.48500 * 109.47231 * 240.00119 * 21 19 17 25 25 C 1.47065 * 136.06335 * 180.02562 * 13 11 9 26 26 H 1.09004 * 109.47370 * 300.00182 * 1 2 3 27 27 H 1.09000 * 109.47373 * 60.00499 * 1 2 3 28 28 H 1.09003 * 109.47351 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47370 * 239.99818 * 2 1 3 30 30 H 1.09008 * 109.47373 * 119.99854 * 2 1 3 31 31 H 1.08997 * 109.47310 * 59.99833 * 3 2 1 32 32 H 1.09001 * 109.46607 * 299.99562 * 3 2 1 33 33 H 1.08992 * 110.48937 * 98.37784 * 6 4 3 34 34 H 1.09003 * 110.48358 * 335.73323 * 6 4 3 35 35 H 1.08996 * 110.75076 * 279.62654 * 7 6 4 36 36 H 1.08999 * 110.75750 * 156.25319 * 7 6 4 37 37 H 1.08992 * 110.48499 * 80.74172 * 8 7 6 38 38 H 1.08999 * 110.48327 * 203.37974 * 8 7 6 39 39 H 1.08997 * 113.47016 * 321.93833 * 14 13 11 40 40 H 1.08999 * 113.46790 * 92.37751 * 14 13 11 41 41 H 0.96695 * 113.99839 * 86.39127 * 16 15 14 42 42 H 0.96997 * 119.99798 * 180.02562 * 20 19 17 43 43 H 1.09008 * 113.46477 * 267.62513 * 25 13 11 44 44 H 1.09000 * 113.46531 * 38.05623 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9435 0.8668 -0.8463 6 6 4.0979 0.8434 1.3206 7 6 5.3537 1.6895 1.6464 8 6 4.9285 3.1139 1.2109 9 6 4.0982 2.8860 -0.0691 10 1 4.7279 3.0110 -0.9500 11 6 2.9456 3.8557 -0.1160 12 8 2.4216 4.2251 0.9136 13 7 2.4969 4.3125 -1.3019 14 6 2.8539 4.1179 -2.7153 15 6 2.2911 5.5151 -2.9965 16 8 3.2409 6.5695 -2.8275 17 6 1.5009 5.6204 -4.2754 18 1 0.4280 5.4969 -4.2590 19 6 2.1475 5.8742 -5.4665 20 7 3.4538 6.0250 -5.4864 21 14 1.1680 6.0039 -7.0517 22 1 -0.2735 5.7962 -6.7614 23 1 1.3646 7.3504 -7.6463 24 1 1.6341 4.9677 -8.0078 25 6 1.4396 5.2304 -1.7519 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 4.3684 -0.2035 1.1831 34 1 3.3537 0.9455 2.1104 35 1 6.2108 1.3478 1.0661 36 1 5.5724 1.6611 2.7138 37 1 4.3186 3.5827 1.9829 38 1 5.8053 3.7239 0.9933 39 1 3.9278 4.0417 -2.8853 40 1 2.2923 3.3184 -3.1987 41 1 3.7758 6.7466 -3.6133 42 1 3.9086 6.2039 -6.3242 43 1 0.4971 4.7304 -1.9758 44 1 1.3135 6.0981 -1.1044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331628878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:59 Heat of formation + Delta-G solvation = -77.437492 kcal Electronic energy + Delta-G solvation = -23448.458874 eV Core-core repulsion = 20172.859634 eV Total energy + Delta-G solvation = -3275.599240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18474 -38.49217 -36.56579 -34.35428 -33.96731 -32.19677 -30.11484 -29.34225 -27.99931 -25.41629 -25.09691 -24.80692 -21.66120 -21.17754 -20.31644 -19.39659 -17.84364 -17.26186 -16.48069 -15.69386 -15.46418 -15.09897 -14.97314 -14.48451 -14.19355 -13.92702 -13.57903 -13.22969 -12.86519 -12.78312 -12.49676 -12.24877 -11.97542 -11.82137 -11.56896 -11.47606 -11.17409 -11.09506 -10.98682 -10.96372 -10.82254 -10.60399 -10.53295 -10.46589 -10.31562 -10.23833 -10.21526 -9.52906 -9.08594 -8.77006 -8.36347 -7.79500 -6.41230 -4.51362 3.12397 3.21956 3.25097 3.27593 3.62537 4.17333 4.58038 4.69912 4.75965 4.82737 5.06716 5.12370 5.27624 5.29334 5.52607 5.56490 5.59152 5.66672 5.69802 5.72273 5.76155 5.90213 5.93546 5.95404 5.96907 6.00546 6.13462 6.17101 6.21903 6.27099 6.31017 6.43266 6.43858 6.50246 6.51332 6.58702 6.69220 6.74539 7.11878 7.62292 7.80655 8.51842 8.59300 8.86074 9.20250 9.49173 10.65473 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.004933 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.947479 B = 5675.209479 C = 6328.105242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.126 4.126 4 C -0.073 4.073 5 H 0.076 0.924 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.112 4.112 9 C -0.105 4.105 10 H 0.086 0.914 11 C 0.549 3.451 12 O -0.566 6.566 13 N -0.634 5.634 14 C 0.074 3.926 15 C 0.239 3.761 16 O -0.572 6.572 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.106 3.894 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -10.801 7.145 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.163 4.163 4 C -0.092 4.092 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.127 4.127 10 H 0.105 0.895 11 C 0.339 3.661 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.049 4.049 15 C 0.197 3.803 16 O -0.385 6.385 17 C -0.570 4.570 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.232 -10.622 8.339 13.560 hybrid contribution -0.106 -0.020 -1.630 1.633 sum 1.126 -10.642 6.709 12.631 Atomic orbital electron populations 1.21766 0.96087 1.01080 1.02033 1.21507 0.95733 0.96922 1.01556 1.21919 0.94297 0.96816 1.03267 1.21650 0.95738 0.93464 0.98380 0.90602 1.22438 0.97324 0.98574 0.96989 1.22476 0.97578 0.95221 1.00736 1.22348 0.98976 0.97109 0.96584 1.21918 0.95780 0.94459 1.00506 0.89541 1.19789 0.84274 0.80319 0.81688 1.90600 1.60703 1.60506 1.32811 1.49765 1.35313 1.45783 1.05814 1.24114 1.00592 1.02921 0.77312 1.19501 0.86475 0.83383 0.90928 1.86050 1.53765 1.54483 1.44212 1.21478 0.94659 1.49895 0.90984 0.90926 1.25078 0.95021 0.93213 0.99746 1.69273 1.07752 1.48752 1.28158 0.86272 0.80229 0.77964 0.82032 1.19405 1.20605 1.20665 1.23283 0.91820 0.91541 0.95022 0.92851 0.92659 0.93105 0.92308 0.92192 0.90851 0.91530 0.91794 0.91305 0.91627 0.91566 0.89769 0.91627 0.91940 0.90282 0.75025 0.91647 0.89942 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.15 0.37 -1.38 16 2 C -0.12 -1.42 5.77 -26.73 -0.15 -1.57 16 3 C -0.13 -1.83 3.39 -26.73 -0.09 -1.92 16 4 C -0.07 -1.00 2.95 -89.51 -0.26 -1.26 16 5 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 6 C -0.12 -1.34 5.42 -25.07 -0.14 -1.48 16 7 C -0.12 -1.39 6.91 -24.73 -0.17 -1.57 16 8 C -0.11 -1.62 6.32 -25.07 -0.16 -1.78 16 9 C -0.11 -1.70 3.19 -90.66 -0.29 -1.99 16 10 H 0.09 1.39 7.68 -51.93 -0.40 0.99 16 11 C 0.55 11.07 4.94 -10.99 -0.05 11.02 16 12 O -0.57 -12.86 15.68 5.55 0.09 -12.77 16 13 N -0.63 -13.38 3.28 -185.40 -0.61 -13.99 16 14 C 0.07 1.58 7.63 -8.64 -0.07 1.51 16 15 C 0.24 5.73 1.57 -91.41 -0.14 5.59 16 16 O -0.57 -14.87 13.53 -35.23 -0.48 -15.34 16 17 C -0.53 -13.24 8.69 -34.44 -0.30 -13.54 16 18 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 19 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 20 N -0.90 -22.63 11.01 55.43 0.61 -22.02 16 21 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.11 2.33 8.03 -8.52 -0.07 2.26 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.65 7.43 -51.92 -0.39 0.26 16 31 H 0.07 1.23 6.95 -51.93 -0.36 0.86 16 32 H 0.07 1.11 7.04 -51.93 -0.37 0.74 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.84 7.80 -51.93 -0.40 0.43 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.38 6.91 -51.93 -0.36 1.02 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 40 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 41 H 0.39 10.29 6.33 45.56 0.29 10.58 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 43 H 0.08 1.67 8.10 -51.92 -0.42 1.25 16 44 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -27.35 346.28 -8.82 -36.18 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -7.01 Total: 12.91 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.62 Total: -4.44 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.00 Total: -36.01 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.39 Total: -28.11 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.35 -8.82 -36.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331628878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.262 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds