Wall clock time and date at job start Tue Mar 31 2020 05:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46993 * 2 1 4 4 C 1.52998 * 109.47310 * 179.97438 * 3 2 1 5 5 H 1.09008 * 110.01459 * 304.14613 * 4 3 2 6 6 C 1.54265 * 110.03413 * 65.53711 * 4 3 2 7 7 C 1.54889 * 104.19588 * 142.94169 * 6 4 3 8 8 C 1.54888 * 102.74864 * 322.06419 * 7 6 4 9 9 C 1.53872 * 110.03608 * 182.75831 * 4 3 2 10 10 H 1.09002 * 110.03484 * 121.37855 * 9 4 3 11 11 C 1.50703 * 110.02993 * 359.95147 * 9 4 3 12 12 O 1.21281 * 120.00003 * 273.73596 * 11 9 4 13 13 N 1.34780 * 120.00257 * 93.73588 * 11 9 4 14 14 C 1.47069 * 136.05495 * 359.62638 * 13 11 9 15 15 C 1.53748 * 87.88784 * 152.96815 * 14 13 11 16 16 O 1.42907 * 114.39130 * 272.67940 * 15 14 13 17 17 C 1.50697 * 114.26979 * 139.79384 * 15 14 13 18 18 H 1.08000 * 119.99944 * 266.47024 * 17 15 14 19 19 C 1.37877 * 120.00131 * 86.47444 * 17 15 14 20 20 N 1.31513 * 120.00134 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99866 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47198 * 89.99826 * 21 19 17 23 23 H 1.48504 * 109.46658 * 209.99877 * 21 19 17 24 24 H 1.48497 * 109.46984 * 329.99234 * 21 19 17 25 25 C 1.47058 * 136.06097 * 180.02562 * 13 11 9 26 26 H 1.09002 * 109.47298 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47630 * 299.99989 * 1 2 3 28 28 H 1.09001 * 109.47253 * 60.00233 * 1 2 3 29 29 H 1.08990 * 109.47342 * 240.00103 * 2 1 3 30 30 H 1.09001 * 109.47253 * 119.99767 * 2 1 3 31 31 H 1.09003 * 109.46924 * 59.99578 * 3 2 1 32 32 H 1.09001 * 109.47381 * 300.00252 * 3 2 1 33 33 H 1.08996 * 110.48608 * 261.62736 * 6 4 3 34 34 H 1.09002 * 110.47944 * 24.13433 * 6 4 3 35 35 H 1.09007 * 110.75261 * 80.37772 * 7 6 4 36 36 H 1.09000 * 110.75680 * 203.55578 * 7 6 4 37 37 H 1.09000 * 110.48266 * 156.62115 * 8 7 6 38 38 H 1.08999 * 110.48147 * 279.25826 * 8 7 6 39 39 H 1.09002 * 113.46602 * 267.70227 * 14 13 11 40 40 H 1.09004 * 113.46776 * 38.13515 * 14 13 11 41 41 H 0.96701 * 113.99502 * 273.58138 * 16 15 14 42 42 H 0.97001 * 120.00151 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.46924 * 321.86762 * 25 13 11 44 44 H 1.09008 * 113.47000 * 92.29853 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9427 0.8678 0.8486 6 6 4.0990 0.8423 -1.3182 7 6 5.3550 1.6882 -1.6437 8 6 4.9294 3.1129 -1.2099 9 6 4.0970 2.8866 0.0702 10 1 4.7255 3.0126 0.9518 11 6 2.9436 3.8555 0.1151 12 8 2.4367 4.2430 -0.9163 13 7 2.4753 4.2914 1.3014 14 6 2.8004 4.0616 2.7172 15 6 2.2405 5.4624 3.0141 16 8 3.1932 6.5192 2.8811 17 6 1.4277 5.5490 4.2802 18 1 0.3550 5.4294 4.2425 19 6 2.0535 5.7809 5.4867 20 7 3.3598 5.9261 5.5327 21 14 1.0461 5.8875 7.0561 22 1 0.9268 4.5364 7.6605 23 1 1.7183 6.8010 8.0147 24 1 -0.3077 6.4101 6.7407 25 6 1.4100 5.2005 1.7499 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 4.3694 -0.2045 -1.1795 34 1 3.3545 0.9416 -2.1082 35 1 6.2117 1.3471 -1.0624 36 1 5.5766 1.6560 -2.7105 37 1 5.8060 3.7231 -0.9922 38 1 4.3201 3.5809 -1.9830 39 1 2.2209 3.2574 3.1706 40 1 3.8697 3.9705 2.9078 41 1 3.7145 6.6814 3.6793 42 1 3.8001 6.0889 6.3815 43 1 1.2944 6.0799 1.1163 44 1 0.4641 4.6964 1.9485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331628883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:01 Heat of formation + Delta-G solvation = -77.033739 kcal Electronic energy + Delta-G solvation = -23460.587670 eV Core-core repulsion = 20185.005938 eV Total energy + Delta-G solvation = -3275.581732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17933 -38.46565 -36.56797 -34.35375 -33.96965 -32.19342 -30.12168 -29.32911 -27.99197 -25.41323 -25.08104 -24.80825 -21.66328 -21.17656 -20.31627 -19.40035 -17.84570 -17.25212 -16.47341 -15.69516 -15.46718 -15.09692 -14.97962 -14.47665 -14.19579 -13.92128 -13.57590 -13.22581 -12.86532 -12.78174 -12.48846 -12.24839 -11.97699 -11.82352 -11.56315 -11.47402 -11.18137 -11.07142 -10.98650 -10.97707 -10.82244 -10.60279 -10.53817 -10.46953 -10.31595 -10.23597 -10.22234 -9.52616 -9.08554 -8.76975 -8.35797 -7.79201 -6.40834 -4.51075 3.13371 3.21742 3.24521 3.27539 3.62629 4.17458 4.58250 4.69576 4.75969 4.82985 5.06751 5.12383 5.27632 5.29241 5.52485 5.56455 5.58787 5.66655 5.69935 5.72064 5.76026 5.90317 5.93342 5.95524 5.96859 6.00518 6.13401 6.17118 6.21668 6.27036 6.31042 6.43100 6.43824 6.50263 6.51141 6.58584 6.69206 6.73653 7.11987 7.62433 7.80897 8.51748 8.59254 8.86051 9.20440 9.49191 10.65781 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.004959 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.142444 B = 5644.841977 C = 6300.686739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.126 4.126 4 C -0.074 4.074 5 H 0.076 0.924 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.105 4.105 10 H 0.086 0.914 11 C 0.549 3.451 12 O -0.566 6.566 13 N -0.634 5.634 14 C 0.073 3.927 15 C 0.240 3.760 16 O -0.571 6.571 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.106 3.894 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.393 0.607 42 H 0.274 0.726 43 H 0.064 0.936 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -10.699 -7.212 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.163 4.163 4 C -0.093 4.093 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.127 4.127 10 H 0.105 0.895 11 C 0.339 3.661 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.050 4.050 15 C 0.198 3.802 16 O -0.384 6.384 17 C -0.571 4.571 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.017 4.017 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.359 -10.490 -8.405 13.511 hybrid contribution -0.147 -0.068 1.620 1.628 sum 1.212 -10.558 -6.786 12.609 Atomic orbital electron populations 1.21768 0.96083 1.01085 1.02035 1.21505 0.95737 0.96909 1.01560 1.21924 0.94309 0.96834 1.03259 1.21652 0.95728 0.93478 0.98393 0.90592 1.22434 0.97319 0.98574 0.96995 1.22469 0.97554 0.95232 1.00746 1.22359 0.98956 0.97073 0.96612 1.21936 0.95770 0.94457 1.00509 0.89516 1.19790 0.84209 0.80382 0.81693 1.90599 1.61568 1.59784 1.32676 1.49777 1.35466 1.45725 1.05687 1.24211 1.00703 1.02937 0.77159 1.19582 0.86434 0.83302 0.90868 1.86049 1.54355 1.54042 1.43983 1.21442 0.94523 1.50299 0.90830 0.90991 1.25073 0.95080 0.93174 0.99695 1.69265 1.08273 1.48909 1.27490 0.86323 0.80202 0.78202 0.81765 1.20296 1.20876 1.19506 1.23289 0.91581 0.91832 0.94984 0.93103 0.92638 0.92867 0.92199 0.92294 0.91469 0.90925 0.91808 0.91315 0.91650 0.91570 0.91636 0.89740 0.90285 0.91949 0.75021 0.91594 0.91736 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.42 5.77 -26.73 -0.15 -1.57 16 3 C -0.13 -1.84 3.39 -26.73 -0.09 -1.93 16 4 C -0.07 -1.00 2.95 -89.50 -0.26 -1.27 16 5 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 6 C -0.12 -1.34 5.42 -25.07 -0.14 -1.48 16 7 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 8 C -0.11 -1.62 6.32 -25.02 -0.16 -1.78 16 9 C -0.11 -1.70 3.18 -90.60 -0.29 -1.99 16 10 H 0.09 1.40 7.73 -51.93 -0.40 0.99 16 11 C 0.55 11.07 4.95 -10.98 -0.05 11.02 16 12 O -0.57 -12.87 15.73 5.56 0.09 -12.78 16 13 N -0.63 -13.36 3.19 -185.06 -0.59 -13.95 16 14 C 0.07 1.56 7.69 -8.38 -0.06 1.50 16 15 C 0.24 5.76 1.58 -91.12 -0.14 5.61 16 16 O -0.57 -14.84 13.55 -35.23 -0.48 -15.32 16 17 C -0.53 -13.26 8.70 -34.44 -0.30 -13.56 16 18 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 20 N -0.90 -22.63 11.01 55.43 0.61 -22.02 16 21 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.11 2.33 8.02 -8.51 -0.07 2.26 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.65 7.43 -51.93 -0.39 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.12 6.98 -51.93 -0.36 0.75 16 32 H 0.07 1.21 7.01 -51.93 -0.36 0.85 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.83 7.80 -51.93 -0.40 0.43 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.38 6.89 -51.93 -0.36 1.02 16 39 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 40 H 0.06 1.34 7.94 -51.93 -0.41 0.92 16 41 H 0.39 10.29 6.33 45.56 0.29 10.58 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.66 8.10 -51.92 -0.42 1.24 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -27.33 346.36 -8.81 -36.13 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.01 Total: 12.93 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.62 Total: -4.45 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.02 Total: -35.97 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.39 Total: -28.11 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.33 -8.81 -36.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331628883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.900 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds