Wall clock time and date at job start Tue Mar 31 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.01469 * 305.05736 * 4 3 2 6 6 C 1.53879 * 110.03313 * 66.45431 * 4 3 2 7 7 C 1.54259 * 106.60034 * 119.28297 * 6 4 3 8 8 C 1.54893 * 104.19602 * 23.60929 * 7 6 4 9 9 C 1.54268 * 110.02688 * 183.61716 * 4 3 2 10 10 H 1.08996 * 110.49161 * 335.78425 * 9 4 3 11 11 C 1.50703 * 110.48376 * 98.43101 * 9 4 3 12 12 O 1.21277 * 120.00215 * 359.97438 * 11 9 4 13 13 N 1.34774 * 119.99685 * 179.97438 * 11 9 4 14 14 C 1.47067 * 136.06142 * 359.63603 * 13 11 9 15 15 C 1.53757 * 87.89278 * 152.95537 * 14 13 11 16 16 O 1.42889 * 114.39245 * 272.67445 * 15 14 13 17 17 C 1.50702 * 114.08555 * 139.77640 * 15 14 13 18 18 H 1.07998 * 119.99488 * 266.56191 * 17 15 14 19 19 C 1.37866 * 120.00141 * 86.56308 * 17 15 14 20 20 N 1.31526 * 119.99910 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00371 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47334 * 89.99979 * 21 19 17 23 23 H 1.48505 * 109.47300 * 210.00122 * 21 19 17 24 24 H 1.48502 * 109.46868 * 329.99862 * 21 19 17 25 25 C 1.47065 * 136.05555 * 179.97438 * 13 11 9 26 26 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 27 27 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 30 30 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 31 31 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 32 32 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 33 33 H 1.09000 * 110.02753 * 238.57158 * 6 4 3 34 34 H 1.09002 * 110.03275 * 359.94561 * 6 4 3 35 35 H 1.08998 * 110.48944 * 142.28623 * 7 6 4 36 36 H 1.09001 * 110.48419 * 264.93104 * 7 6 4 37 37 H 1.08995 * 110.75718 * 80.36922 * 8 7 6 38 38 H 1.09001 * 110.75578 * 203.56258 * 8 7 6 39 39 H 1.09009 * 113.46445 * 267.69096 * 14 13 11 40 40 H 1.09002 * 113.47126 * 38.12260 * 14 13 11 41 41 H 0.96700 * 114.00099 * 273.57909 * 16 15 14 42 42 H 0.97001 * 119.99501 * 179.97438 * 20 19 17 43 43 H 1.09008 * 113.47205 * 321.86569 * 25 13 11 44 44 H 1.09001 * 113.47035 * 92.30977 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9435 0.8540 0.8375 6 6 4.0966 0.8650 -1.3263 7 6 4.9267 1.9807 -1.9940 8 6 5.3535 2.8928 -0.8171 9 6 4.0985 2.8889 0.0908 10 1 3.3542 3.5914 -0.2840 11 6 4.4742 3.2243 1.5112 12 8 4.3387 2.3955 2.3861 13 7 4.9608 4.4453 1.8090 14 6 5.2681 5.6741 1.0617 15 6 5.0221 6.4583 2.3611 16 8 3.6596 6.8313 2.5763 17 6 5.9954 7.5853 2.5930 18 1 6.8842 7.4182 3.1833 19 6 5.7512 8.8294 2.0515 20 7 4.6690 9.0326 1.3321 21 14 6.9572 10.2265 2.3394 22 1 7.9766 10.2310 1.2596 23 1 6.2269 11.5196 2.3359 24 1 7.6268 10.0398 3.6516 25 6 5.4237 5.1333 3.0236 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.7262 -0.0031 -1.1314 34 1 3.2621 0.5840 -1.9688 35 1 5.8028 1.5606 -2.4882 36 1 4.3161 2.5366 -2.7055 37 1 6.2109 2.4711 -0.2928 38 1 5.5753 3.9000 -1.1698 39 1 6.2999 5.7237 0.7134 40 1 4.5463 5.8961 0.2756 41 1 3.4097 7.6664 2.1578 42 1 4.4971 9.9081 0.9514 43 1 4.8344 4.8948 3.9091 44 1 6.4965 5.0404 3.1930 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331628886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:04 Heat of formation + Delta-G solvation = -80.468003 kcal Electronic energy + Delta-G solvation = -23004.835590 eV Core-core repulsion = 19729.104937 eV Total energy + Delta-G solvation = -3275.730653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98273 -38.49791 -36.73225 -34.41863 -33.97133 -32.19771 -29.87061 -29.64944 -27.92070 -25.40677 -25.04334 -24.89964 -21.72712 -21.37053 -19.87575 -19.25030 -18.21967 -17.42186 -16.54571 -15.66308 -15.35765 -15.11181 -14.87504 -14.52819 -14.16852 -13.88253 -13.52689 -13.29689 -12.83558 -12.71671 -12.54970 -12.40954 -12.07386 -12.03784 -11.56601 -11.41312 -11.36495 -11.06890 -11.02778 -11.00626 -10.87736 -10.61935 -10.50105 -10.36012 -10.29400 -10.26799 -10.20007 -9.54177 -9.09376 -8.77643 -8.36699 -7.80470 -6.41065 -4.51312 3.13290 3.21696 3.24490 3.27225 3.61779 4.17308 4.56516 4.70354 4.75519 4.83396 5.05554 5.06670 5.19732 5.30621 5.48504 5.54454 5.56016 5.63734 5.65156 5.70060 5.73352 5.85349 5.92025 5.95272 5.96931 5.98588 6.07087 6.15388 6.19030 6.23332 6.32246 6.35775 6.42236 6.46613 6.53554 6.60775 6.69497 6.73219 7.11618 7.62192 7.80408 8.51490 8.58605 8.84158 9.20196 9.48883 10.65526 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004017 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.018617 B = 6968.212989 C = 7253.867552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.079 4.079 5 H 0.090 0.910 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.102 4.102 10 H 0.096 0.904 11 C 0.541 3.459 12 O -0.565 6.565 13 N -0.633 5.633 14 C 0.074 3.926 15 C 0.240 3.760 16 O -0.571 6.571 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.105 3.895 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.393 0.607 42 H 0.274 0.726 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -11.005 -7.597 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.098 4.098 5 H 0.108 0.892 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.123 4.123 10 H 0.114 0.886 11 C 0.331 3.669 12 O -0.445 6.445 13 N -0.365 5.365 14 C -0.049 4.049 15 C 0.198 3.802 16 O -0.384 6.384 17 C -0.572 4.572 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.017 4.017 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.168 -12.048 -6.962 14.083 hybrid contribution 0.628 1.377 -0.340 1.551 sum -1.540 -10.671 -7.302 13.022 Atomic orbital electron populations 1.21782 0.96223 1.01180 1.01796 1.21542 0.95457 0.97165 1.01882 1.21672 0.94612 0.96599 1.01933 1.21706 0.95227 0.94472 0.98371 0.89185 1.22254 0.99261 0.98004 0.96179 1.22342 0.99492 0.96771 0.97356 1.22433 0.96501 1.00457 0.95551 1.22089 0.98990 0.98443 0.92778 0.88612 1.19930 0.77180 0.79534 0.90240 1.90602 1.56826 1.47401 1.49720 1.49712 1.61076 1.11580 1.14173 1.24223 0.99704 0.81022 0.99991 1.19582 0.82286 0.89679 0.88693 1.86046 1.26936 1.46941 1.78475 1.21447 1.07340 0.94730 1.33636 0.90967 1.25074 0.95673 0.98911 0.93379 1.69272 1.26088 1.24396 1.34157 0.86316 0.80536 0.80624 0.78964 1.20290 1.20879 1.19520 1.23302 0.98653 0.90390 0.89384 0.92729 0.92925 0.93098 0.92133 0.92020 0.91799 0.92219 0.92016 0.91594 0.91692 0.91517 0.91347 0.90781 0.90243 0.91897 0.75018 0.91597 0.91703 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.36 5.75 -26.73 -0.15 -1.51 16 3 C -0.11 -1.44 4.36 -26.73 -0.12 -1.55 16 4 C -0.08 -1.11 2.33 -89.50 -0.21 -1.32 16 5 H 0.09 1.47 6.85 -51.93 -0.36 1.11 16 6 C -0.12 -1.34 5.95 -25.61 -0.15 -1.50 16 7 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 8 C -0.11 -1.54 6.10 -24.73 -0.15 -1.69 16 9 C -0.10 -1.63 2.62 -90.11 -0.24 -1.86 16 10 H 0.10 1.53 7.85 -51.93 -0.41 1.12 16 11 C 0.54 11.08 7.37 -10.99 -0.08 11.00 16 12 O -0.57 -13.09 16.20 5.56 0.09 -13.00 16 13 N -0.63 -13.46 3.68 -185.05 -0.68 -14.14 16 14 C 0.07 1.57 7.50 -8.38 -0.06 1.51 16 15 C 0.24 5.75 1.59 -91.13 -0.14 5.60 16 16 O -0.57 -14.81 13.55 -35.23 -0.48 -15.29 16 17 C -0.53 -13.28 8.69 -34.44 -0.30 -13.58 16 18 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 20 N -0.90 -22.55 11.01 55.43 0.61 -21.94 16 21 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.11 2.33 8.02 -8.52 -0.07 2.26 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 38 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 39 H 0.08 1.60 8.10 -51.92 -0.42 1.18 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.39 10.26 6.33 45.56 0.29 10.55 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.06 1.48 8.14 -51.92 -0.42 1.06 16 44 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -27.50 350.35 -8.83 -36.32 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -7.05 Total: 12.20 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.57 Total: -3.64 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.07 Total: -36.09 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.39 Total: -28.28 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.50 -8.83 -36.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331628886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.146 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds