Wall clock time and date at job start Tue Mar 31 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47651 * 2 1 4 4 C 1.52994 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.09006 * 110.81779 * 51.66910 * 4 3 2 6 6 C 1.54890 * 110.75953 * 288.33016 * 4 3 2 7 7 C 1.54271 * 104.19634 * 203.74633 * 6 4 3 8 8 C 1.53869 * 106.59759 * 23.60657 * 7 6 4 9 9 C 1.54267 * 106.60446 * 0.02562 * 8 7 6 10 10 H 1.09005 * 110.48915 * 95.19693 * 9 8 7 11 11 C 1.50696 * 110.48773 * 217.71211 * 9 8 7 12 12 O 1.21284 * 119.99855 * 118.54569 * 11 9 8 13 13 N 1.34773 * 120.00197 * 298.54227 * 11 9 8 14 14 C 1.47581 * 134.49354 * 180.02562 * 13 11 9 15 15 C 1.53945 * 86.11895 * 155.35947 * 14 13 11 16 16 O 1.42904 * 113.73986 * 269.15696 * 15 14 13 17 17 C 1.50694 * 113.74220 * 137.95139 * 15 14 13 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 15 14 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47582 * 134.48982 * 359.97438 * 13 11 9 26 26 H 1.08997 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46772 * 299.99747 * 1 2 3 28 28 H 1.09000 * 109.46771 * 59.99829 * 1 2 3 29 29 H 1.09006 * 109.46984 * 239.99592 * 2 1 3 30 30 H 1.09006 * 109.47446 * 120.00203 * 2 1 3 31 31 H 1.08998 * 109.46941 * 59.99747 * 3 2 1 32 32 H 1.08996 * 109.46946 * 300.00389 * 3 2 1 33 33 H 1.08991 * 110.48856 * 85.06197 * 6 4 3 34 34 H 1.08999 * 110.47982 * 322.41933 * 6 4 3 35 35 H 1.08995 * 110.02714 * 264.32380 * 7 6 4 36 36 H 1.08996 * 110.07149 * 142.91644 * 7 6 4 37 37 H 1.09007 * 110.03287 * 240.71668 * 8 7 6 38 38 H 1.09002 * 110.07591 * 119.30758 * 8 7 6 39 39 H 1.09001 * 113.77016 * 41.05438 * 14 13 11 40 40 H 1.09005 * 113.86980 * 269.67513 * 14 13 11 41 41 H 0.96699 * 113.99284 * 178.07513 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.76615 * 90.34214 * 25 13 11 44 44 H 1.08991 * 113.77327 * 318.94082 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9578 0.8103 -0.7984 6 6 4.1185 0.9870 1.3758 7 6 5.5327 1.6000 1.4409 8 6 5.5331 2.8068 0.4863 9 6 4.1190 2.8856 -0.1252 10 1 3.4983 3.5829 0.4376 11 6 4.1926 3.2970 -1.5730 12 8 3.7801 2.5521 -2.4368 13 7 4.7167 4.4926 -1.9081 14 6 4.9415 5.2029 -3.1820 15 6 4.8978 6.4961 -2.3479 16 8 3.5919 7.0658 -2.2378 17 6 5.9479 7.5046 -2.7366 18 1 6.6397 7.2832 -3.5359 19 6 6.0256 8.7100 -2.0718 20 7 5.1829 8.9799 -1.0988 21 14 7.3278 9.9598 -2.5532 22 1 8.5586 9.7243 -1.7564 23 1 7.6391 9.8188 -3.9983 24 1 6.8208 11.3301 -2.2875 25 6 5.2955 5.6176 -1.1483 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 4.1714 -0.1005 1.4243 34 1 3.4967 1.3760 2.1821 35 1 6.2722 0.8676 1.1172 36 1 5.7520 1.9276 2.4571 37 1 6.2729 2.6601 -0.3007 38 1 5.7520 3.7206 1.0386 39 1 4.1175 5.1081 -3.8892 40 1 5.9138 5.0034 -3.6327 41 1 3.5551 7.8620 -1.6903 42 1 5.2379 9.8278 -0.6309 43 1 6.3724 5.5391 -0.9991 44 1 4.7541 5.8539 -0.2323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331628889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:06 Heat of formation + Delta-G solvation = -85.060308 kcal Electronic energy + Delta-G solvation = -23037.253890 eV Core-core repulsion = 19761.324100 eV Total energy + Delta-G solvation = -3275.929790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92643 -38.35106 -36.65220 -34.46566 -33.89218 -32.19788 -29.84248 -29.67324 -27.83937 -25.38121 -25.22903 -24.88789 -21.58717 -21.16032 -19.89361 -19.49720 -18.20873 -17.33246 -16.42494 -15.67707 -15.31294 -15.10085 -14.95643 -14.44621 -14.17162 -13.75930 -13.59093 -13.29073 -12.87477 -12.76426 -12.53464 -12.33182 -12.05248 -11.96778 -11.54862 -11.43806 -11.33482 -11.14764 -11.06347 -11.01513 -10.79400 -10.54395 -10.49434 -10.42691 -10.30080 -10.25776 -10.21283 -9.54673 -9.08704 -8.75811 -8.38035 -7.78514 -6.39465 -4.49547 3.13848 3.22262 3.25328 3.28779 3.62428 4.18396 4.55135 4.68329 4.75964 4.85461 5.06249 5.10080 5.23046 5.30479 5.47601 5.55188 5.56513 5.65607 5.67339 5.70472 5.75562 5.88450 5.93720 5.96823 5.97888 6.00723 6.10983 6.15696 6.19165 6.23552 6.33333 6.36020 6.41047 6.49646 6.55181 6.60912 6.67584 6.74203 7.11656 7.63201 7.83059 8.53334 8.56149 8.84801 9.21713 9.46672 10.67081 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026715 B = 0.004079 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.842259 B = 6862.130748 C = 7267.269035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.070 4.070 5 H 0.086 0.914 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.104 4.104 10 H 0.095 0.905 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.631 5.631 14 C 0.110 3.890 15 C 0.238 3.762 16 O -0.573 6.573 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.271 1.271 24 H -0.284 1.284 25 C 0.080 3.920 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.392 0.608 42 H 0.273 0.727 43 H 0.080 0.920 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -11.598 6.852 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.104 0.896 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.125 4.125 10 H 0.113 0.887 11 C 0.324 3.676 12 O -0.445 6.445 13 N -0.364 5.364 14 C -0.012 4.012 15 C 0.196 3.804 16 O -0.386 6.386 17 C -0.575 4.575 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.196 1.196 24 H -0.209 1.209 25 C -0.043 4.043 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.248 0.752 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.057 -12.508 6.211 14.116 hybrid contribution 0.918 1.281 0.296 1.604 sum -1.139 -11.228 6.507 13.027 Atomic orbital electron populations 1.21777 0.96258 1.01128 1.01799 1.21500 0.95461 0.97169 1.01706 1.21578 0.94423 0.96632 1.02109 1.21981 0.95169 0.94416 0.97270 0.89607 1.22451 0.95976 1.00061 0.97208 1.22108 0.97339 0.97198 0.99323 1.22069 0.95482 0.98840 0.98643 1.22126 0.98361 0.98411 0.93580 0.88666 1.20098 0.77551 0.79388 0.90555 1.90611 1.50341 1.51903 1.51636 1.50165 1.58693 1.15648 1.11901 1.23429 1.00154 0.89382 0.88264 1.19845 0.82880 0.88710 0.88934 1.86059 1.29103 1.48270 1.75128 1.21528 1.15459 1.01055 1.19419 0.91109 1.25063 0.96054 0.98050 0.93839 1.69322 1.37082 1.24921 1.22589 0.86339 0.81012 0.80005 0.79212 1.20327 1.19554 1.20906 1.24254 0.97610 0.83231 0.99178 0.93140 0.92950 0.92709 0.92062 0.92320 0.92352 0.91375 0.91703 0.91577 0.91932 0.91784 0.91629 0.91020 0.91310 0.89859 0.75243 0.91678 0.90221 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.36 5.83 -26.73 -0.16 -1.52 16 3 C -0.11 -1.46 4.71 -26.73 -0.13 -1.59 16 4 C -0.07 -0.97 1.88 -88.61 -0.17 -1.13 16 5 H 0.09 1.34 7.53 -51.93 -0.39 0.95 16 6 C -0.12 -1.32 5.69 -25.07 -0.14 -1.47 16 7 C -0.12 -1.37 6.80 -25.61 -0.17 -1.55 16 8 C -0.11 -1.56 5.77 -25.62 -0.15 -1.71 16 9 C -0.10 -1.64 2.51 -90.10 -0.23 -1.87 16 10 H 0.10 1.50 8.05 -51.93 -0.42 1.09 16 11 C 0.53 10.83 7.24 -10.99 -0.08 10.75 16 12 O -0.56 -12.91 16.31 5.55 0.09 -12.82 16 13 N -0.63 -13.35 3.58 -178.32 -0.64 -13.99 16 14 C 0.11 2.43 8.23 -2.97 -0.02 2.40 16 15 C 0.24 5.69 1.44 -90.86 -0.13 5.56 16 16 O -0.57 -14.77 13.48 -35.23 -0.48 -15.25 16 17 C -0.54 -13.40 8.62 -34.44 -0.30 -13.70 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 20 N -0.90 -22.55 11.09 55.43 0.61 -21.94 16 21 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.08 1.70 7.47 -2.99 -0.02 1.68 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 31 H 0.06 0.72 7.99 -51.93 -0.41 0.30 16 32 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 33 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.69 7.93 -51.93 -0.41 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.98 7.83 -51.92 -0.41 0.57 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 41 H 0.39 10.16 6.46 45.56 0.29 10.45 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -27.38 351.89 -8.72 -36.09 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.17 Total: 11.90 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.42 Total: -3.62 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.02 Total: -35.92 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.38 Total: -28.07 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.38 -8.72 -36.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331628889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.966 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds