Wall clock time and date at job start Tue Mar 31 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 H 1.09002 * 109.46871 * 57.15352 * 3 2 1 5 5 O 1.42901 * 109.47000 * 297.15603 * 3 2 1 6 6 C 1.42905 * 113.99737 * 152.23560 * 5 3 2 7 7 C 1.54264 * 110.02856 * 270.83716 * 6 5 3 8 8 C 1.54891 * 104.19451 * 217.10469 * 7 6 5 9 9 C 1.54888 * 102.74790 * 37.94662 * 8 7 6 10 10 C 1.53872 * 110.03168 * 153.67285 * 6 5 3 11 11 C 1.50697 * 109.47144 * 177.15515 * 3 2 1 12 12 O 1.21292 * 120.00171 * 115.00071 * 11 3 2 13 13 N 1.34777 * 119.99762 * 294.99964 * 11 3 2 14 14 C 1.37103 * 120.00007 * 179.97438 * 13 11 3 15 15 H 1.07993 * 120.00186 * 222.86175 * 14 13 11 16 16 C 1.38952 * 119.99565 * 43.13879 * 14 13 11 17 17 N 1.31413 * 119.99965 * 18.76975 * 16 14 13 18 18 Si 1.86800 * 119.99944 * 198.77089 * 16 14 13 19 19 H 1.48493 * 109.47047 * 89.99983 * 18 16 14 20 20 H 1.48500 * 109.47250 * 210.00218 * 18 16 14 21 21 H 1.48503 * 109.46921 * 329.99902 * 18 16 14 22 22 C 1.46504 * 120.00199 * 359.97438 * 13 11 3 23 23 C 1.52997 * 117.49970 * 191.77479 * 22 13 11 24 24 C 1.52994 * 60.00066 * 252.51445 * 23 22 13 25 25 H 1.09000 * 109.47445 * 65.17237 * 1 2 3 26 26 H 1.09001 * 109.47316 * 185.16898 * 1 2 3 27 27 H 1.09000 * 109.46665 * 305.17304 * 1 2 3 28 28 H 1.08996 * 109.46983 * 239.99922 * 2 1 3 29 29 H 1.08994 * 109.46965 * 120.00275 * 2 1 3 30 30 H 1.09000 * 110.01809 * 32.27822 * 6 5 3 31 31 H 1.09004 * 110.49023 * 335.78156 * 7 6 5 32 32 H 1.09001 * 110.48934 * 98.43257 * 7 6 5 33 33 H 1.08997 * 110.75914 * 279.62724 * 8 7 6 34 34 H 1.08999 * 110.91547 * 156.32975 * 8 7 6 35 35 H 1.09000 * 110.48489 * 203.38002 * 9 8 7 36 36 H 1.09004 * 110.49135 * 80.73409 * 9 8 7 37 37 H 1.09004 * 110.03195 * 238.56839 * 10 6 5 38 38 H 1.09001 * 110.03331 * 359.94878 * 10 6 5 39 39 H 0.97003 * 120.00078 * 184.96192 * 17 16 14 40 40 H 1.08997 * 115.54903 * 337.49123 * 22 13 11 41 41 H 1.09004 * 117.49596 * 0.02562 * 23 22 13 42 42 H 1.09001 * 117.50059 * 145.02183 * 23 22 13 43 43 H 1.09001 * 117.50184 * 252.50768 * 24 23 22 44 44 H 1.09007 * 117.49995 * 107.49559 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6357 1.9708 0.8634 5 8 1.6191 2.0965 -1.1988 6 6 1.4665 3.5112 -1.0661 7 6 0.0312 3.8475 -0.6117 8 6 -0.3138 5.1499 -1.3758 9 6 0.3459 4.9201 -2.7582 10 6 1.6666 4.1932 -2.4309 11 6 3.5454 1.4430 0.0705 12 8 4.1959 1.8713 -0.8593 13 7 4.1688 0.9675 1.1668 14 6 5.5383 0.9675 1.2308 15 1 6.0606 0.1073 1.6225 16 6 6.2540 2.0767 0.7969 17 7 5.6543 3.2398 0.6767 18 14 8.0687 1.9145 0.3846 19 1 8.2209 1.5650 -1.0505 20 1 8.7551 3.2032 0.6558 21 1 8.6728 0.8464 1.2211 22 6 3.3830 0.4507 2.2901 23 6 4.1199 0.1838 3.6041 24 6 3.6520 -0.9873 2.7379 25 1 -0.3634 0.4315 -0.9327 26 1 -0.3634 -1.0235 0.0926 27 1 -0.3633 0.5920 0.8401 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1873 3.8984 -0.3460 31 1 -0.6548 3.0479 -0.8916 32 1 0.0017 4.0175 0.4646 33 1 0.1223 6.0164 -0.8788 34 1 -1.3927 5.2673 -1.4774 35 1 0.5462 5.8729 -3.2483 36 1 -0.2892 4.2938 -3.3847 37 1 2.4841 4.9119 -2.3728 38 1 1.8810 3.4452 -3.1942 39 1 6.1341 3.9969 0.3059 40 1 2.3572 0.8137 2.3526 41 1 5.1892 0.3932 3.6329 42 1 3.5789 0.3714 4.5316 43 1 2.8032 -1.5703 3.0954 44 1 4.4137 -1.5489 2.1968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331665961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:13 Heat of formation + Delta-G solvation = -57.948287 kcal Electronic energy + Delta-G solvation = -23942.576862 eV Core-core repulsion = 20667.822737 eV Total energy + Delta-G solvation = -3274.754125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31036 -38.03654 -36.22616 -35.33868 -32.83347 -32.67518 -30.77266 -28.45229 -27.66771 -26.62367 -24.33736 -21.82979 -21.65414 -20.83084 -20.52298 -19.97397 -19.27368 -16.72591 -16.50392 -16.04759 -15.50545 -14.86641 -14.40810 -14.33667 -13.84104 -13.58328 -13.53283 -13.19156 -13.07359 -12.83513 -12.22198 -12.04223 -11.74434 -11.43862 -11.31471 -10.97590 -10.96110 -10.88815 -10.85266 -10.84526 -10.78979 -10.58664 -10.42943 -10.30127 -10.15553 -9.98145 -9.86980 -9.71615 -9.35117 -8.61150 -7.72960 -6.99520 -6.07119 -3.85247 3.33653 3.39912 3.43230 4.07347 4.17107 4.36006 4.76671 4.83474 4.86628 4.92192 5.14906 5.24546 5.43541 5.50073 5.54759 5.57515 5.67116 5.72488 5.76878 5.79083 5.81320 5.83895 5.87030 5.97153 6.04210 6.10056 6.12711 6.22112 6.22574 6.27277 6.28970 6.44295 6.46377 6.51202 6.58919 6.61642 6.70216 6.75365 6.95435 7.63471 7.84212 8.29668 9.08599 9.21108 9.68661 10.32460 10.99516 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.006940 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.499581 B = 4033.606139 C = 5289.777288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.081 3.919 4 H 0.062 0.938 5 O -0.353 6.353 6 C 0.091 3.909 7 C -0.148 4.148 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.116 4.116 11 C 0.462 3.538 12 O -0.516 6.516 13 N -0.428 5.428 14 C -0.344 4.344 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.832 5.832 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.073 3.927 23 C -0.178 4.178 24 C -0.206 4.206 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -0.884 0.768 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.019 3.981 4 H 0.079 0.921 5 O -0.271 6.271 6 C 0.033 3.967 7 C -0.186 4.186 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.154 4.154 11 C 0.249 3.751 12 O -0.392 6.392 13 N -0.151 5.151 14 C -0.470 4.470 15 H 0.095 0.905 16 C -0.137 4.137 17 N -0.466 5.466 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.033 4.033 23 C -0.216 4.216 24 C -0.246 4.246 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.436 -0.509 0.073 11.447 hybrid contribution 0.968 0.175 0.205 1.005 sum -10.468 -0.334 0.277 10.477 Atomic orbital electron populations 1.21714 0.95708 1.00859 1.01898 1.21673 0.95838 0.94537 1.03698 1.22046 0.94039 0.94070 0.87931 0.92058 1.87908 1.86905 1.18932 1.33317 1.22669 0.94675 0.81814 0.97555 1.22958 0.98088 0.97885 0.99690 1.22408 0.99866 0.97576 0.96118 1.22343 0.96827 0.99860 0.96921 1.22104 0.97051 0.99200 0.97033 1.20411 0.88486 0.82927 0.83287 1.90531 1.66315 1.45562 1.36745 1.42850 1.04929 1.56874 1.10436 1.18868 0.79813 1.00095 1.48259 0.90534 1.25152 0.98772 0.93790 0.96002 1.69874 1.38284 0.99903 1.38573 0.86303 0.83955 0.77208 0.79212 1.20404 1.21400 1.19888 1.21749 0.95394 0.95817 0.90339 1.23104 1.02480 1.02349 0.93648 1.23304 1.03376 0.92425 1.05449 0.92259 0.93079 0.93264 0.91151 0.89565 0.91372 0.90806 0.91975 0.91596 0.91847 0.91937 0.91763 0.91206 0.90533 0.92724 0.87915 0.87498 0.89926 0.89790 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.73 37.16 0.36 -1.58 16 2 C -0.12 -2.02 5.33 -26.73 -0.14 -2.16 16 3 C 0.08 1.64 1.55 -27.88 -0.04 1.59 16 4 H 0.06 1.18 7.01 -51.93 -0.36 0.81 16 5 O -0.35 -7.20 8.64 -55.09 -0.48 -7.67 16 6 C 0.09 1.67 3.11 -25.62 -0.08 1.59 16 7 C -0.15 -2.14 6.51 -25.07 -0.16 -2.30 16 8 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 9 C -0.12 -1.58 6.83 -25.07 -0.17 -1.76 16 10 C -0.12 -1.95 6.61 -25.61 -0.17 -2.12 16 11 C 0.46 11.85 6.24 -10.99 -0.07 11.78 16 12 O -0.52 -15.50 14.15 -14.31 -0.20 -15.71 16 13 N -0.43 -10.67 2.86 -107.73 -0.31 -10.98 16 14 C -0.34 -9.39 7.70 -14.93 -0.12 -9.51 16 15 H 0.08 2.03 7.56 -52.49 -0.40 1.64 16 16 C 0.07 2.07 4.37 -17.47 -0.08 1.99 16 17 N -0.83 -24.68 11.67 55.50 0.65 -24.04 16 18 Si 0.91 22.16 29.60 -169.99 -5.03 17.13 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.07 1.45 4.42 -67.93 -0.30 1.15 16 23 C -0.18 -3.20 9.83 -26.74 -0.26 -3.46 16 24 C -0.21 -3.48 9.62 -26.74 -0.26 -3.74 16 25 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.40 5.15 -51.93 -0.27 1.13 16 30 H 0.07 1.47 7.81 -51.93 -0.41 1.06 16 31 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 39 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 40 H 0.10 1.82 6.11 -51.93 -0.32 1.50 16 41 H 0.11 2.16 6.97 -51.93 -0.36 1.80 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -32.36 347.58 -9.36 -41.71 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.56 Total: 4.52 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -1.66 Total: -10.20 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.34 Total: -35.02 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.68 Total: -23.38 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.36 -9.36 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331665961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.234 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds