Wall clock time and date at job start Tue Mar 31 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47534 * 2 1 4 4 C 1.53002 * 109.47000 * 239.99638 * 2 1 3 5 5 C 1.50702 * 109.46921 * 62.74152 * 4 2 1 6 6 O 1.21295 * 119.99947 * 2.02864 * 5 4 2 7 7 N 1.34773 * 119.99750 * 182.03528 * 5 4 2 8 8 C 1.37099 * 120.00171 * 356.32207 * 7 5 4 9 9 H 1.07999 * 119.99784 * 232.59158 * 8 7 5 10 10 C 1.38948 * 120.00130 * 52.59345 * 8 7 5 11 11 N 1.31406 * 120.00373 * 204.75656 * 10 8 7 12 12 Si 1.86809 * 119.99760 * 24.75295 * 10 8 7 13 13 H 1.48501 * 109.47068 * 95.50200 * 12 10 8 14 14 H 1.48503 * 109.46934 * 215.50272 * 12 10 8 15 15 H 1.48493 * 109.46883 * 335.49853 * 12 10 8 16 16 C 1.46500 * 119.99707 * 176.05006 * 7 5 4 17 17 C 1.54268 * 110.03223 * 237.90513 * 16 7 5 18 18 C 1.54971 * 104.16049 * 217.13957 * 17 16 7 19 19 C 1.54886 * 102.77616 * 37.88389 * 18 17 16 20 20 C 1.53873 * 110.03317 * 120.68767 * 16 7 5 21 21 C 1.53007 * 109.47080 * 119.99806 * 2 1 3 22 22 C 1.52990 * 117.49829 * 8.45796 * 21 2 1 23 23 C 1.52992 * 117.50050 * 299.79473 * 21 2 1 24 24 H 1.08996 * 109.47691 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46855 * 300.00078 * 1 2 3 26 26 H 1.09002 * 109.47172 * 59.99566 * 1 2 3 27 27 H 0.96698 * 114.00388 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47502 * 302.74061 * 4 2 1 29 29 H 1.08997 * 109.47134 * 182.73705 * 4 2 1 30 30 H 0.96992 * 120.00194 * 179.97438 * 11 10 8 31 31 H 1.09001 * 110.01988 * 359.29547 * 16 7 5 32 32 H 1.08997 * 110.48463 * 335.78211 * 17 16 7 33 33 H 1.08996 * 110.48719 * 98.42776 * 17 16 7 34 34 H 1.09003 * 110.71803 * 279.57224 * 18 17 16 35 35 H 1.08999 * 110.92651 * 156.29491 * 18 17 16 36 36 H 1.09004 * 110.48500 * 203.40142 * 19 18 17 37 37 H 1.09007 * 110.59926 * 80.82258 * 19 18 17 38 38 H 1.09001 * 110.03621 * 238.56630 * 20 16 7 39 39 H 1.09001 * 110.03096 * 359.97438 * 20 16 7 40 40 H 1.09003 * 115.54572 * 154.12525 * 21 2 1 41 41 H 1.09005 * 117.50277 * 359.97438 * 22 21 2 42 42 H 1.09000 * 117.50247 * 145.02197 * 22 21 2 43 43 H 1.08999 * 117.50022 * 214.97720 * 23 21 2 44 44 H 1.09001 * 117.49878 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5938 0.0272 -2.4788 6 8 0.9645 1.0580 -2.3662 7 7 1.8941 -0.4488 -3.7034 8 6 2.6692 -1.5724 -3.8310 9 1 3.5458 -1.5549 -4.4616 10 6 2.3269 -2.7337 -3.1492 11 7 3.2508 -3.6221 -2.8595 12 14 0.5533 -3.0320 -2.6441 13 1 -0.1188 -3.8708 -3.6688 14 1 0.5225 -3.7310 -1.3343 15 1 -0.1535 -1.7313 -2.5277 16 6 1.3872 0.2310 -4.8980 17 6 0.5501 -0.7474 -5.7476 18 6 0.8864 -0.3624 -7.2106 19 6 2.3968 -0.0272 -7.1380 20 6 2.5606 0.6892 -5.7816 21 6 2.0400 -0.7212 1.2493 22 6 1.0099 -1.4508 2.1138 23 6 1.6397 -0.1467 2.6096 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.9704 1.4236 0.0004 28 1 1.6371 -1.7338 -1.2741 29 1 3.1288 -0.7640 -1.2250 30 1 3.0120 -4.4326 -2.3833 31 1 0.7798 1.0889 -4.6096 32 1 0.8463 -1.7769 -5.5466 33 1 -0.5131 -0.6100 -5.5510 34 1 0.3116 0.5099 -7.5217 35 1 0.7087 -1.2006 -7.8844 36 1 2.6803 0.6352 -7.9560 37 1 2.9937 -0.9390 -7.1625 38 1 2.5223 1.7693 -5.9228 39 1 3.5073 0.4061 -5.3214 40 1 3.0309 -1.1670 1.1631 41 1 -0.0313 -1.4166 1.7928 42 1 1.3232 -2.3763 2.5968 43 1 2.3671 -0.2149 3.4185 44 1 1.0127 0.7449 2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331705377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:08 Heat of formation + Delta-G solvation = -55.066934 kcal Electronic energy + Delta-G solvation = -24247.457112 eV Core-core repulsion = 20972.827932 eV Total energy + Delta-G solvation = -3274.629180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71048 -38.42121 -36.68523 -34.90464 -34.12809 -31.85672 -31.00701 -28.07999 -28.01584 -26.54193 -24.52731 -23.50198 -22.15645 -20.10229 -19.95461 -19.34132 -19.04494 -17.06520 -16.33265 -15.94237 -15.56799 -15.16897 -14.75250 -14.34274 -14.17287 -13.67931 -13.53116 -13.14662 -12.93477 -12.64534 -12.55117 -12.11859 -11.99551 -11.53737 -11.33797 -11.15333 -10.99893 -10.82826 -10.81387 -10.57407 -10.49966 -10.40509 -10.31017 -10.14453 -10.07228 -9.98953 -9.86379 -9.77848 -9.36635 -8.89049 -8.39960 -7.45747 -6.52828 -4.20759 3.05271 3.18231 3.27482 3.83943 3.93034 4.08679 4.40974 4.82269 4.88302 4.95065 5.12888 5.23958 5.25763 5.28724 5.40335 5.50437 5.62590 5.78927 5.83973 6.00335 6.01446 6.10766 6.16612 6.17471 6.22744 6.23444 6.27936 6.30704 6.33667 6.42088 6.43992 6.45889 6.54885 6.60299 6.67314 6.85130 6.89994 6.96854 7.09423 7.68205 7.88520 8.26781 8.50722 8.99224 9.36707 9.81932 10.56730 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.006915 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.249203 B = 4047.950977 C = 4641.451201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.178 3.822 3 O -0.537 6.537 4 C -0.145 4.145 5 C 0.501 3.499 6 O -0.573 6.573 7 N -0.472 5.472 8 C -0.342 4.342 9 H 0.097 0.903 10 C 0.079 3.921 11 N -0.854 5.854 12 Si 0.846 3.154 13 H -0.280 1.280 14 H -0.279 1.279 15 H -0.255 1.255 16 C 0.131 3.869 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.184 4.184 22 C -0.182 4.182 23 C -0.166 4.166 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.365 0.635 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.274 0.726 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 3.121 2.379 4.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.137 3.863 3 O -0.340 6.340 4 C -0.185 4.185 5 C 0.291 3.709 6 O -0.456 6.456 7 N -0.194 5.194 8 C -0.469 4.469 9 H 0.114 0.886 10 C -0.128 4.128 11 N -0.488 5.488 12 Si 0.671 3.329 13 H -0.207 1.207 14 H -0.205 1.205 15 H -0.179 1.179 16 C 0.027 3.973 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.203 4.203 22 C -0.219 4.219 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.211 0.789 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.038 3.590 2.506 5.329 hybrid contribution -0.143 -0.979 0.216 1.012 sum -3.180 2.612 2.721 4.933 Atomic orbital electron populations 1.21993 0.93385 1.01175 1.03822 1.20341 0.94424 0.81608 0.89933 1.86634 1.25353 1.25211 1.96825 1.22268 1.03401 0.99688 0.93095 1.20311 0.80880 0.84745 0.85013 1.90529 1.43539 1.24833 1.86683 1.43800 1.47144 1.25759 1.02681 1.18766 1.06990 0.87959 1.33222 0.88566 1.25596 0.96803 0.95329 0.95105 1.69781 1.32590 1.10524 1.35922 0.87350 0.87511 0.79678 0.78354 1.20718 1.20483 1.17866 1.21621 0.93972 0.95127 0.86561 1.22700 0.98519 1.01811 0.94012 1.22410 0.96381 1.00138 0.96835 1.22268 0.96314 1.00217 0.96687 1.22370 1.00190 0.98502 0.95266 1.23148 1.00198 1.04248 0.92692 1.23104 0.98976 0.95955 1.03851 1.22821 1.03625 0.97386 0.96467 0.92507 0.92823 0.89289 0.78947 0.89978 0.88593 0.91534 0.90048 0.89782 0.92942 0.92311 0.92213 0.92814 0.91424 0.92837 0.90751 0.87590 0.88214 0.89082 0.89220 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 7.15 37.16 0.27 -2.54 16 2 C 0.18 3.36 0.79 -90.62 -0.07 3.29 16 3 O -0.54 -10.18 11.54 -55.26 -0.64 -10.82 16 4 C -0.14 -3.12 3.05 -27.88 -0.09 -3.21 16 5 C 0.50 11.90 5.32 -10.99 -0.06 11.84 16 6 O -0.57 -14.44 12.44 -14.49 -0.18 -14.62 16 7 N -0.47 -11.04 1.85 -106.54 -0.20 -11.24 16 8 C -0.34 -8.52 7.40 -14.93 -0.11 -8.63 16 9 H 0.10 2.56 7.39 -52.49 -0.39 2.17 16 10 C 0.08 2.01 4.13 -17.47 -0.07 1.94 16 11 N -0.85 -22.47 13.96 55.50 0.77 -21.70 16 12 Si 0.85 19.94 24.08 -169.99 -4.09 15.85 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.25 -6.16 6.04 56.52 0.34 -5.82 16 16 C 0.13 2.74 3.29 -66.81 -0.22 2.52 16 17 C -0.13 -2.54 6.42 -25.03 -0.16 -2.70 16 18 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 19 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 20 C -0.12 -2.29 6.26 -25.61 -0.16 -2.45 16 21 C -0.18 -2.95 5.36 -90.63 -0.49 -3.43 16 22 C -0.18 -2.61 9.57 -26.70 -0.26 -2.87 16 23 C -0.17 -2.25 9.80 -26.70 -0.26 -2.51 16 24 H 0.06 1.04 6.98 -51.93 -0.36 0.68 16 25 H 0.05 0.91 7.08 -51.93 -0.37 0.54 16 26 H 0.09 1.95 5.83 -51.93 -0.30 1.65 16 27 H 0.37 5.70 9.05 45.56 0.41 6.11 16 28 H 0.08 1.87 2.98 -51.93 -0.15 1.71 16 29 H 0.10 2.07 8.10 -51.93 -0.42 1.65 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 31 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 32 H 0.08 1.80 6.42 -51.93 -0.33 1.47 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.48 6.95 -51.93 -0.36 1.12 16 40 H 0.11 1.65 8.11 -51.93 -0.42 1.23 16 41 H 0.10 1.44 5.85 -51.93 -0.30 1.14 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.34 7.62 -51.93 -0.40 0.95 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -28.20 329.16 -7.73 -35.93 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.34 Total: 14.48 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.02 Total: -12.85 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.58 Total: -32.93 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.82 Total: -25.44 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.09 Total: 15.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.20 -7.73 -35.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331705377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.140 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds