Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47364 * 120.00122 * 2 1 3 5 5 C 1.50694 * 109.47556 * 177.77343 * 4 2 1 6 6 O 1.21296 * 119.99932 * 5.29012 * 5 4 2 7 7 N 1.34779 * 120.00176 * 185.29072 * 5 4 2 8 8 C 1.37103 * 120.00118 * 179.97438 * 7 5 4 9 9 H 1.07995 * 119.99749 * 140.57589 * 8 7 5 10 10 C 1.38947 * 120.00041 * 320.58206 * 8 7 5 11 11 N 1.31417 * 119.99675 * 339.65219 * 10 8 7 12 12 Si 1.86798 * 120.00172 * 159.66010 * 10 8 7 13 13 H 1.48503 * 109.46958 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47314 * 119.99593 * 12 10 8 15 15 H 1.48500 * 109.46987 * 239.99592 * 12 10 8 16 16 C 1.46498 * 120.00083 * 359.97438 * 7 5 4 17 17 C 1.54965 * 110.92348 * 131.39835 * 16 7 5 18 18 C 1.54269 * 104.15938 * 156.29716 * 17 16 7 19 19 C 1.53880 * 106.63931 * 336.44835 * 18 17 16 20 20 C 1.54268 * 106.59774 * 359.97438 * 19 18 17 21 21 C 1.53006 * 109.47364 * 240.00028 * 2 1 3 22 22 C 1.52992 * 117.50171 * 128.74436 * 21 2 1 23 23 C 1.53001 * 117.49567 * 60.08463 * 21 2 1 24 24 H 1.08999 * 109.47136 * 300.84246 * 1 2 3 25 25 H 1.09004 * 109.47373 * 60.84413 * 1 2 3 26 26 H 1.08998 * 109.47276 * 180.84407 * 1 2 3 27 27 H 0.96703 * 114.00179 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47068 * 57.77031 * 4 2 1 29 29 H 1.09005 * 109.47337 * 297.77563 * 4 2 1 30 30 H 0.97004 * 119.99926 * 180.02562 * 11 10 8 31 31 H 1.09000 * 110.66972 * 8.09587 * 16 7 5 32 32 H 1.09001 * 110.47353 * 37.64772 * 17 16 7 33 33 H 1.08994 * 110.53176 * 274.97861 * 17 16 7 34 34 H 1.08995 * 110.03610 * 217.13899 * 18 17 16 35 35 H 1.08995 * 110.03464 * 95.75077 * 18 17 16 36 36 H 1.08997 * 110.03297 * 119.25727 * 19 18 17 37 37 H 1.08999 * 110.03186 * 240.64383 * 19 18 17 38 38 H 1.08999 * 110.48644 * 142.29024 * 20 19 18 39 39 H 1.09000 * 110.48399 * 264.79514 * 20 19 18 40 40 H 1.09000 * 115.54603 * 274.42060 * 21 2 1 41 41 H 1.08998 * 117.50034 * 0.02562 * 22 21 2 42 42 H 1.09000 * 117.49796 * 145.01833 * 22 21 2 43 43 H 1.09005 * 117.49459 * 214.97859 * 23 21 2 44 44 H 1.08997 * 117.49914 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5459 -0.7693 1.2219 6 8 4.1553 -0.1929 0.3458 7 7 4.2157 -1.4526 2.1711 8 6 5.5858 -1.4967 2.1460 9 1 6.1450 -1.4347 3.0679 10 6 6.2548 -1.6210 0.9346 11 7 5.6244 -2.0895 -0.1191 12 14 8.0503 -1.1226 0.8037 13 1 8.5245 -0.6296 2.1218 14 1 8.8613 -2.2968 0.3930 15 1 8.1923 -0.0447 -0.2078 16 6 3.4798 -2.1483 3.2297 17 6 3.9886 -3.6028 3.3935 18 6 3.6083 -3.9749 4.8415 19 6 3.4777 -2.6520 5.6166 20 6 3.7838 -1.5211 4.6129 21 6 2.0400 -0.7213 -1.2493 22 6 3.0763 0.0039 -2.1101 23 6 1.6374 -0.1483 -2.6096 24 1 -0.3633 0.5269 0.8823 25 1 -0.3634 0.5007 -0.8975 26 1 -0.3634 -1.0275 0.0151 27 1 2.9703 1.4236 -0.0004 28 1 1.6444 -1.7367 1.2694 29 1 1.7096 -0.1849 2.1388 30 1 6.0915 -2.1766 -0.9647 31 1 2.4089 -2.1349 3.0265 32 1 5.0695 -3.6459 3.2599 33 1 3.4891 -4.2645 2.6859 34 1 4.3889 -4.5924 5.2857 35 1 2.6583 -4.5093 4.8525 36 1 2.4642 -2.5440 6.0029 37 1 4.1944 -2.6278 6.4374 38 1 3.1351 -0.6642 4.7942 39 1 4.8311 -1.2262 4.6784 40 1 2.1253 -1.8046 -1.1647 41 1 3.3950 0.9947 -1.7863 42 1 3.8431 -0.6024 -2.5922 43 1 1.4582 -0.8548 -3.4202 44 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331705387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = -59.331280 kcal Electronic energy + Delta-G solvation = -24301.971623 eV Core-core repulsion = 21027.157527 eV Total energy + Delta-G solvation = -3274.814096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41828 -38.07717 -36.37298 -34.27310 -33.22253 -31.91488 -31.07035 -28.10501 -27.69764 -26.81330 -24.49052 -22.60676 -21.53073 -20.10238 -19.73839 -19.63643 -18.83804 -16.42360 -16.24112 -15.99626 -15.24335 -14.82785 -14.53988 -14.42760 -13.80638 -13.50320 -13.18879 -12.93229 -12.69421 -12.23411 -12.03559 -11.91556 -11.69325 -11.60049 -11.40728 -11.05750 -10.85698 -10.77655 -10.64588 -10.58466 -10.57562 -10.46600 -10.26936 -10.11638 -9.94344 -9.82815 -9.70317 -9.34055 -9.08699 -8.71091 -7.85497 -7.00082 -6.04908 -3.75473 3.32349 3.42527 3.43354 4.25217 4.39990 4.55126 4.88712 4.92129 5.17494 5.20355 5.28818 5.30791 5.43546 5.51528 5.61001 5.75071 5.86075 5.93081 5.97778 6.01546 6.08635 6.10998 6.13044 6.16322 6.18951 6.19666 6.26521 6.37896 6.38377 6.45533 6.49817 6.54541 6.70273 6.76742 6.85010 6.87791 6.89100 7.01631 7.14597 7.67687 8.30468 8.46293 9.13222 9.24483 9.76439 10.38184 11.02409 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.008450 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.048701 B = 3313.009858 C = 4813.904242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.183 3.817 3 O -0.573 6.573 4 C -0.161 4.161 5 C 0.474 3.526 6 O -0.525 6.525 7 N -0.445 5.445 8 C -0.342 4.342 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.817 5.817 12 Si 0.902 3.098 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.283 1.283 16 C 0.129 3.871 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.200 4.200 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.390 0.610 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -1.046 3.971 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.141 3.859 3 O -0.387 6.387 4 C -0.202 4.202 5 C 0.261 3.739 6 O -0.404 6.404 7 N -0.166 5.166 8 C -0.469 4.469 9 H 0.093 0.907 10 C -0.137 4.137 11 N -0.451 5.451 12 Si 0.729 3.271 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.209 1.209 16 C 0.024 3.976 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.171 4.171 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.237 4.237 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.245 0.755 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.165 -0.667 3.317 8.838 hybrid contribution 1.467 -0.259 0.001 1.490 sum -6.698 -0.926 3.318 7.532 Atomic orbital electron populations 1.21711 0.93641 1.01603 1.02087 1.20183 0.92467 0.81931 0.91280 1.86261 1.29849 1.25769 1.96813 1.22363 0.97460 1.01230 0.99123 1.19691 0.87218 0.82324 0.84628 1.90406 1.68847 1.46034 1.35147 1.43275 1.05454 1.43789 1.24058 1.18818 0.80009 1.54480 0.93589 0.90664 1.25030 0.98004 0.94706 0.95919 1.69909 1.36849 1.37393 1.00959 0.86327 0.84342 0.78174 0.78215 1.19898 1.21637 1.20878 1.22022 0.95177 0.91884 0.88563 1.22548 1.03372 0.96020 0.94060 1.22100 1.00405 0.96923 0.96702 1.22057 1.00451 0.95339 0.97979 1.22670 1.02358 0.96914 0.95181 1.22628 1.04541 0.99110 0.90739 1.22493 0.90342 1.01752 1.01250 1.23017 1.00572 1.02725 0.97432 0.92505 0.92181 0.91712 0.75461 0.90572 0.90555 0.93075 0.91141 0.89570 0.92691 0.92490 0.92747 0.92635 0.92509 0.92701 0.90701 0.88456 0.88980 0.89705 0.90243 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.70 37.15 0.32 -1.65 16 2 C 0.18 3.32 0.92 -90.62 -0.08 3.24 16 3 O -0.57 -11.41 12.12 -53.47 -0.65 -12.06 16 4 C -0.16 -3.04 3.38 -27.89 -0.09 -3.14 16 5 C 0.47 11.04 6.48 -10.99 -0.07 10.97 16 6 O -0.53 -13.48 8.74 -12.70 -0.11 -13.59 16 7 N -0.45 -10.36 2.60 -105.58 -0.27 -10.63 16 8 C -0.34 -8.82 7.48 -14.93 -0.11 -8.93 16 9 H 0.08 1.93 7.01 -52.49 -0.37 1.56 16 10 C 0.07 1.98 4.32 -17.47 -0.08 1.91 16 11 N -0.82 -22.63 11.43 55.50 0.63 -21.99 16 12 Si 0.90 21.38 29.60 -169.99 -5.03 16.35 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.13 2.45 3.17 -65.90 -0.21 2.24 16 17 C -0.12 -2.20 6.32 -25.03 -0.16 -2.36 16 18 C -0.12 -1.76 6.80 -25.61 -0.17 -1.94 16 19 C -0.12 -1.67 6.80 -25.61 -0.17 -1.84 16 20 C -0.13 -2.23 6.41 -25.07 -0.16 -2.39 16 21 C -0.15 -2.88 4.04 -90.62 -0.37 -3.25 16 22 C -0.12 -2.40 8.03 -26.70 -0.21 -2.62 16 23 C -0.20 -3.37 9.67 -26.69 -0.26 -3.63 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.86 7.26 -51.93 -0.38 0.48 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.39 8.34 5.22 45.56 0.24 8.58 16 28 H 0.08 1.36 7.37 -51.93 -0.38 0.97 16 29 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.24 5.91 -51.93 -0.31 0.93 16 32 H 0.09 1.79 6.96 -51.93 -0.36 1.42 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.40 6.90 -51.93 -0.36 1.04 16 40 H 0.10 2.00 8.11 -51.93 -0.42 1.58 16 41 H 0.09 1.90 6.27 -51.93 -0.33 1.57 16 42 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.39 7.61 -51.93 -0.40 0.99 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -28.19 334.79 -9.06 -37.25 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.84 Total: 13.02 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.83 Total: -13.38 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.36 Total: -32.63 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.76 Total: -25.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.19 -9.06 -37.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331705387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.085 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds