Wall clock time and date at job start Tue Mar 31 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47364 * 120.00122 * 2 1 3 5 5 C 1.50694 * 109.47556 * 177.77343 * 4 2 1 6 6 O 1.21296 * 119.99932 * 5.29012 * 5 4 2 7 7 N 1.34779 * 120.00176 * 185.29072 * 5 4 2 8 8 C 1.37103 * 120.00118 * 179.97438 * 7 5 4 9 9 H 1.07995 * 119.99749 * 140.57589 * 8 7 5 10 10 C 1.38947 * 120.00041 * 320.58206 * 8 7 5 11 11 N 1.31417 * 119.99675 * 339.65219 * 10 8 7 12 12 Si 1.86798 * 120.00172 * 159.66010 * 10 8 7 13 13 H 1.48503 * 109.46958 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47314 * 119.99593 * 12 10 8 15 15 H 1.48500 * 109.46987 * 239.99592 * 12 10 8 16 16 C 1.46498 * 120.00083 * 359.97438 * 7 5 4 17 17 C 1.54965 * 110.92348 * 131.39835 * 16 7 5 18 18 C 1.54269 * 104.15938 * 156.29716 * 17 16 7 19 19 C 1.53880 * 106.63931 * 336.44835 * 18 17 16 20 20 C 1.54268 * 106.59774 * 359.97438 * 19 18 17 21 21 C 1.53006 * 109.47364 * 240.00028 * 2 1 3 22 22 C 1.52992 * 117.50171 * 128.74436 * 21 2 1 23 23 C 1.53001 * 117.49567 * 60.08463 * 21 2 1 24 24 H 1.08999 * 109.47136 * 300.84246 * 1 2 3 25 25 H 1.09004 * 109.47373 * 60.84413 * 1 2 3 26 26 H 1.08998 * 109.47276 * 180.84407 * 1 2 3 27 27 H 0.96703 * 114.00179 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47068 * 57.77031 * 4 2 1 29 29 H 1.09005 * 109.47337 * 297.77563 * 4 2 1 30 30 H 0.97004 * 119.99926 * 180.02562 * 11 10 8 31 31 H 1.09000 * 110.66972 * 8.09587 * 16 7 5 32 32 H 1.09001 * 110.47353 * 37.64772 * 17 16 7 33 33 H 1.08994 * 110.53176 * 274.97861 * 17 16 7 34 34 H 1.08995 * 110.03610 * 217.13899 * 18 17 16 35 35 H 1.08995 * 110.03464 * 95.75077 * 18 17 16 36 36 H 1.08997 * 110.03297 * 119.25727 * 19 18 17 37 37 H 1.08999 * 110.03186 * 240.64383 * 19 18 17 38 38 H 1.08999 * 110.48644 * 142.29024 * 20 19 18 39 39 H 1.09000 * 110.48399 * 264.79514 * 20 19 18 40 40 H 1.09000 * 115.54603 * 274.42060 * 21 2 1 41 41 H 1.08998 * 117.50034 * 0.02562 * 22 21 2 42 42 H 1.09000 * 117.49796 * 145.01833 * 22 21 2 43 43 H 1.09005 * 117.49459 * 214.97859 * 23 21 2 44 44 H 1.08997 * 117.49914 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5459 -0.7693 1.2219 6 8 4.1553 -0.1929 0.3458 7 7 4.2157 -1.4526 2.1711 8 6 5.5858 -1.4967 2.1460 9 1 6.1450 -1.4347 3.0679 10 6 6.2548 -1.6210 0.9346 11 7 5.6244 -2.0895 -0.1191 12 14 8.0503 -1.1226 0.8037 13 1 8.5245 -0.6296 2.1218 14 1 8.8613 -2.2968 0.3930 15 1 8.1923 -0.0447 -0.2078 16 6 3.4798 -2.1483 3.2297 17 6 3.9886 -3.6028 3.3935 18 6 3.6083 -3.9749 4.8415 19 6 3.4777 -2.6520 5.6166 20 6 3.7838 -1.5211 4.6129 21 6 2.0400 -0.7213 -1.2493 22 6 3.0763 0.0039 -2.1101 23 6 1.6374 -0.1483 -2.6096 24 1 -0.3633 0.5269 0.8823 25 1 -0.3634 0.5007 -0.8975 26 1 -0.3634 -1.0275 0.0151 27 1 2.9703 1.4236 -0.0004 28 1 1.6444 -1.7367 1.2694 29 1 1.7096 -0.1849 2.1388 30 1 6.0915 -2.1766 -0.9647 31 1 2.4089 -2.1349 3.0265 32 1 5.0695 -3.6459 3.2599 33 1 3.4891 -4.2645 2.6859 34 1 4.3889 -4.5924 5.2857 35 1 2.6583 -4.5093 4.8525 36 1 2.4642 -2.5440 6.0029 37 1 4.1944 -2.6278 6.4374 38 1 3.1351 -0.6642 4.7942 39 1 4.8311 -1.2262 4.6784 40 1 2.1253 -1.8046 -1.1647 41 1 3.3950 0.9947 -1.7863 42 1 3.8431 -0.6024 -2.5922 43 1 1.4582 -0.8548 -3.4202 44 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331705387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:10 Heat of formation + Delta-G solvation = -74.472051 kcal Electronic energy + Delta-G solvation = -24302.628176 eV Core-core repulsion = 21027.157527 eV Total energy + Delta-G solvation = -3275.470649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02739 -39.56824 -37.94164 -35.79670 -35.00619 -33.65839 -32.66103 -29.43311 -29.19704 -28.26422 -26.27636 -24.10959 -23.02361 -21.66107 -21.29113 -20.93555 -20.43045 -18.15994 -17.84891 -17.57550 -16.80492 -16.46310 -16.13083 -15.99703 -15.52451 -15.01783 -14.75176 -14.42108 -14.07322 -13.66257 -13.51234 -13.35249 -13.26832 -13.03650 -12.95560 -12.79502 -12.57463 -12.40185 -12.16183 -12.10682 -11.98180 -11.95702 -11.83835 -11.78055 -11.34955 -11.21599 -11.12993 -10.85105 -10.66678 -10.55736 -9.65970 -8.88753 -8.07173 -5.78136 1.37776 1.45182 1.50815 2.37314 2.59985 3.07203 3.23405 3.34511 3.46393 3.86654 3.91604 3.96544 4.02977 4.04457 4.20866 4.29441 4.43292 4.53071 4.59204 4.71158 4.74171 4.77646 4.79808 4.83592 4.86356 4.91332 4.96802 5.01673 5.07949 5.10508 5.21230 5.27146 5.29772 5.37533 5.38845 5.46551 5.47329 5.60018 5.62512 5.66772 6.30548 6.83040 7.17789 7.36816 7.89298 8.54376 8.98568 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.008450 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.048701 B = 3313.009858 C = 4813.904242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.178 3.822 3 O -0.578 6.578 4 C -0.151 4.151 5 C 0.459 3.541 6 O -0.555 6.555 7 N -0.461 5.461 8 C -0.342 4.342 9 H 0.070 0.930 10 C 0.031 3.969 11 N -0.845 5.845 12 Si 0.950 3.050 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.298 1.298 16 C 0.120 3.880 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.143 4.143 23 C -0.164 4.164 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.381 0.619 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.251 0.749 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -1.342 5.478 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 O -0.390 6.390 4 C -0.191 4.191 5 C 0.248 3.752 6 O -0.436 6.436 7 N -0.182 5.182 8 C -0.470 4.470 9 H 0.087 0.913 10 C -0.176 4.176 11 N -0.480 5.480 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.225 1.225 16 C 0.016 3.984 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.168 4.168 21 C -0.176 4.176 22 C -0.180 4.180 23 C -0.200 4.200 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.234 0.766 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.597 -0.979 4.861 11.699 hybrid contribution 2.218 -0.158 -0.440 2.267 sum -8.378 -1.136 4.421 9.541 Atomic orbital electron populations 1.21715 0.90362 1.03288 1.03083 1.20446 0.94672 0.80898 0.90266 1.86260 1.28975 1.26967 1.96804 1.22312 0.93926 1.02472 1.00422 1.20532 0.89229 0.81547 0.83898 1.90398 1.70064 1.46993 1.36154 1.43512 1.04989 1.44468 1.25194 1.18900 0.81712 1.53314 0.93100 0.91273 1.25625 1.00782 0.95180 0.96022 1.70004 1.37737 1.39290 1.00961 0.85557 0.81390 0.77422 0.77833 1.19043 1.21068 1.22472 1.22306 0.95697 0.92141 0.88304 1.22477 1.00920 0.95657 0.96913 1.22059 1.01857 0.97624 0.93671 1.22034 1.02395 0.93312 0.97204 1.22607 1.00914 0.98462 0.94777 1.22603 1.04510 0.98023 0.92457 1.22296 0.91552 1.00859 1.03272 1.23051 0.97597 1.02978 0.96410 0.91272 0.91482 0.89694 0.76581 0.89169 0.88830 0.93954 0.89221 0.93114 0.93399 0.91678 0.90334 0.89930 0.91389 0.91602 0.93422 0.90361 0.90373 0.92202 0.88364 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.70 71.98 0.63 -2.71 16 2 C 0.18 6.20 0.92 -10.79 -0.01 6.19 16 3 O -0.58 -22.60 12.12 -131.54 -1.59 -24.19 16 4 C -0.15 -5.48 3.38 29.85 0.10 -5.38 16 5 C 0.46 21.60 6.48 87.65 0.57 22.17 16 6 O -0.56 -29.41 8.74 14.36 0.13 -29.28 16 7 N -0.46 -21.68 2.60 -606.34 -1.57 -23.26 16 8 C -0.34 -18.13 7.48 84.04 0.63 -17.50 16 9 H 0.07 3.66 7.01 -2.91 -0.02 3.64 16 10 C 0.03 1.72 4.32 84.92 0.37 2.09 16 11 N -0.84 -48.69 11.43 21.66 0.25 -48.44 16 12 Si 0.95 45.44 29.60 68.60 2.03 47.47 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 16 C 0.12 4.42 3.17 46.31 0.15 4.57 16 17 C -0.12 -4.31 6.32 31.70 0.20 -4.11 16 18 C -0.11 -2.94 6.80 31.32 0.21 -2.73 16 19 C -0.11 -2.71 6.80 31.32 0.21 -2.49 16 20 C -0.13 -4.12 6.41 31.67 0.20 -3.91 16 21 C -0.16 -5.92 4.04 -10.79 -0.04 -5.96 16 22 C -0.14 -5.80 8.03 30.62 0.25 -5.56 16 23 C -0.16 -5.25 9.67 30.62 0.30 -4.95 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.67 7.26 -2.38 -0.02 1.66 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.38 16.63 5.22 -74.06 -0.39 16.25 16 28 H 0.09 3.02 7.37 -2.39 -0.02 3.00 16 29 H 0.09 3.07 8.12 -2.38 -0.02 3.05 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.09 2.93 5.91 -2.39 -0.01 2.92 16 32 H 0.05 2.15 6.96 -2.39 -0.02 2.13 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.77 6.90 -2.39 -0.02 1.75 16 40 H 0.08 3.23 8.11 -2.39 -0.02 3.22 16 41 H 0.08 3.37 6.27 -2.39 -0.01 3.35 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.10 2.96 7.61 -2.39 -0.02 2.95 16 Total: -1.00 -63.37 334.79 3.59 -59.78 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.60 Total: 38.21 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 3.75 Total: -20.28 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.33 Total: -71.70 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -1.47 Total: -53.47 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -63.37 3.59 -59.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331705387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.693 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds