Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46962 * 2 1 4 4 C 1.53000 * 109.47022 * 119.99492 * 2 1 3 5 5 C 1.53003 * 109.46684 * 179.97438 * 4 2 1 6 6 C 1.52990 * 109.47488 * 300.00338 * 5 4 2 7 7 C 1.53003 * 109.47083 * 60.00214 * 6 5 4 8 8 C 1.52996 * 109.47028 * 240.00137 * 2 1 3 9 9 H 1.08996 * 109.47419 * 299.99483 * 8 2 1 10 10 O 1.42896 * 109.47300 * 59.99985 * 8 2 1 11 11 C 1.42907 * 113.99815 * 209.99928 * 10 8 2 12 12 C 1.50700 * 109.47069 * 179.97438 * 11 10 8 13 13 O 1.21295 * 120.00063 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00151 * 179.72489 * 12 11 10 15 15 C 1.37089 * 120.00101 * 180.27225 * 14 12 11 16 16 H 1.08000 * 119.99980 * 224.28472 * 15 14 12 17 17 C 1.38950 * 119.99931 * 44.29121 * 15 14 12 18 18 N 1.31416 * 120.00223 * 18.20871 * 17 15 14 19 19 Si 1.86804 * 120.00046 * 198.20654 * 17 15 14 20 20 H 1.48502 * 109.47121 * 89.99645 * 19 17 15 21 21 H 1.48503 * 109.47474 * 209.99760 * 19 17 15 22 22 H 1.48505 * 109.47212 * 330.00151 * 19 17 15 23 23 C 1.46501 * 119.99594 * 0.27296 * 14 12 11 24 24 C 1.52999 * 117.49670 * 183.22757 * 23 14 12 25 25 C 1.53006 * 117.49797 * 114.60397 * 23 14 12 26 26 H 1.09003 * 109.46962 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47249 * 299.99903 * 1 2 3 28 28 H 1.08997 * 109.47284 * 60.00070 * 1 2 3 29 29 H 1.09003 * 109.46837 * 60.00431 * 4 2 1 30 30 H 1.08997 * 109.47602 * 300.00388 * 4 2 1 31 31 H 1.09007 * 109.46953 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.47043 * 60.00665 * 5 4 2 33 33 H 1.08996 * 109.47527 * 299.99931 * 6 5 4 34 34 H 1.09005 * 109.47368 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.46959 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47079 * 60.00281 * 7 6 5 37 37 H 1.09002 * 109.46872 * 59.99935 * 11 10 8 38 38 H 1.09006 * 109.46896 * 299.99773 * 11 10 8 39 39 H 0.96995 * 119.99696 * 174.94235 * 18 17 15 40 40 H 1.09001 * 115.55261 * 328.93774 * 23 14 12 41 41 H 1.09006 * 117.49892 * 359.97438 * 24 23 14 42 42 H 1.09000 * 117.50177 * 145.02152 * 24 23 14 43 43 H 1.08996 * 117.50271 * 214.97563 * 25 23 14 44 44 H 1.09002 * 117.49425 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5701 -0.7217 1.2489 6 6 4.0796 -1.4432 -0.0002 7 6 3.5695 -0.7220 -1.2495 8 6 2.0400 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2493 10 8 1.5637 -0.0476 -2.4160 11 6 1.3700 -0.9042 -3.5433 12 6 0.8686 -0.0931 -4.7103 13 8 0.6939 1.1010 -4.5884 14 7 0.6192 -0.6937 -5.8908 15 6 0.1684 0.0451 -6.9539 16 1 -0.6417 -0.3256 -7.5644 17 6 0.7539 1.2709 -7.2462 18 7 1.9386 1.5659 -6.7599 19 14 -0.1430 2.4996 -8.3304 20 1 -0.9848 3.3838 -7.4849 21 1 0.8474 3.3207 -9.0722 22 1 -1.0047 1.7712 -9.2959 23 6 0.8297 -2.1360 -6.0377 24 6 0.6014 -2.7458 -7.4223 25 6 -0.4014 -3.0069 -6.2965 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 1.6767 -0.2073 2.1393 31 1 3.9334 -1.2358 2.1388 32 1 3.9337 0.3059 1.2487 33 1 3.7160 -2.4708 0.0000 34 1 5.1696 -1.4440 -0.0003 35 1 3.9322 -1.2364 -2.1395 36 1 3.9332 0.3055 -1.2498 37 1 0.6381 -1.6726 -3.2942 38 1 2.3164 -1.3759 -3.8080 39 1 2.3793 2.3891 -7.0224 40 1 1.6263 -2.5596 -5.4260 41 1 0.2941 -2.0738 -8.2237 42 1 1.2479 -3.5706 -7.7218 43 1 -0.4146 -4.0036 -5.8554 44 1 -1.3679 -2.5066 -6.3578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331804095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -63.152715 kcal Electronic energy + Delta-G solvation = -23199.058888 eV Core-core repulsion = 19924.079082 eV Total energy + Delta-G solvation = -3274.979806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34242 -38.39192 -36.38272 -35.49520 -32.73185 -32.48588 -30.94934 -29.90131 -27.45713 -25.98984 -24.32643 -22.22823 -21.70349 -21.25520 -21.13720 -19.87173 -19.26592 -16.69558 -16.11317 -16.04054 -15.24481 -14.95247 -14.59155 -14.37012 -14.27477 -14.07801 -13.65248 -13.27429 -13.07535 -12.92187 -12.40243 -12.32096 -12.03236 -11.81719 -11.55046 -11.32495 -11.09443 -10.94244 -10.84508 -10.83004 -10.81597 -10.62674 -10.39094 -10.26303 -10.14438 -10.07049 -9.96117 -9.74398 -8.96829 -8.66221 -7.90459 -6.99392 -6.06825 -3.83447 3.33558 3.40539 3.44597 3.86191 4.15637 4.36097 4.69824 4.74560 4.77984 4.87477 5.02764 5.17075 5.23099 5.34282 5.37219 5.47399 5.50907 5.54703 5.55994 5.67817 5.71288 5.76494 5.80537 5.82313 5.92979 5.96757 6.01311 6.08728 6.11659 6.16689 6.20585 6.21720 6.32181 6.38546 6.43570 6.49480 6.57667 6.73524 6.93480 7.62849 7.72650 8.32322 9.08943 9.22659 9.68632 10.34026 11.02255 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.004728 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.997946 B = 5921.286143 C = 6490.138200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.143 4.143 8 C 0.093 3.907 9 H 0.054 0.946 10 O -0.350 6.350 11 C 0.053 3.947 12 C 0.485 3.515 13 O -0.511 6.511 14 N -0.429 5.429 15 C -0.349 4.349 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.832 5.832 19 Si 0.913 3.087 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.072 3.928 24 C -0.172 4.172 25 C -0.208 4.208 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -9.292 11.946 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.181 4.181 8 C 0.035 3.965 9 H 0.072 0.928 10 O -0.267 6.267 11 C -0.027 4.027 12 C 0.271 3.729 13 O -0.387 6.387 14 N -0.152 5.152 15 C -0.475 4.475 16 H 0.096 0.904 17 C -0.138 4.138 18 N -0.465 5.465 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.034 4.034 24 C -0.209 4.209 25 C -0.247 4.247 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.053 -8.246 12.081 14.770 hybrid contribution -0.104 0.128 -0.634 0.656 sum 1.949 -8.118 11.446 14.167 Atomic orbital electron populations 1.21769 0.94737 1.01464 1.02297 1.21160 0.96232 1.00332 0.92789 0.90442 1.21584 0.95375 1.00597 0.97307 1.21571 0.95788 1.00951 0.97599 1.21490 1.00201 0.99187 0.94434 1.22052 0.96437 1.01844 0.97784 1.22068 0.92747 0.95457 0.86266 0.92821 1.88076 1.86010 1.33842 1.18803 1.22370 0.99332 0.93175 0.87831 1.19487 0.82837 0.88244 0.82336 1.90549 1.51589 1.14585 1.81948 1.42671 1.60855 1.03043 1.08629 1.18821 1.17341 1.01954 1.09428 0.90436 1.25263 0.94266 0.98486 0.95742 1.69829 1.12260 1.24142 1.40303 0.86208 0.79409 0.81097 0.79267 1.20282 1.21294 1.19893 1.21715 0.97137 0.84939 0.99635 1.23054 1.02239 1.02211 0.93427 1.23326 0.96207 1.00328 1.04860 0.93287 0.93116 0.91179 0.92034 0.91690 0.92171 0.91830 0.92156 0.91951 0.91789 0.91016 0.92488 0.92591 0.92553 0.88256 0.87407 0.89814 0.89831 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.05 37.16 0.34 -1.63 16 2 C -0.09 -1.17 2.46 -90.62 -0.22 -1.39 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 6 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 7 C -0.14 -1.99 5.54 -26.75 -0.15 -2.14 16 8 C 0.09 1.42 2.04 -26.76 -0.05 1.37 16 9 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 10 O -0.35 -7.22 8.85 -55.14 -0.49 -7.71 16 11 C 0.05 1.10 4.85 36.01 0.17 1.28 16 12 C 0.48 12.87 7.04 -10.98 -0.08 12.79 16 13 O -0.51 -15.97 14.26 -14.36 -0.20 -16.18 16 14 N -0.43 -10.95 2.83 -107.73 -0.31 -11.25 16 15 C -0.35 -9.67 7.92 -14.94 -0.12 -9.79 16 16 H 0.08 2.07 7.26 -52.49 -0.38 1.69 16 17 C 0.07 2.10 4.39 -17.47 -0.08 2.03 16 18 N -0.83 -25.31 11.74 55.50 0.65 -24.66 16 19 Si 0.91 22.33 29.59 -169.99 -5.03 17.30 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.07 1.45 5.88 -67.93 -0.40 1.05 16 24 C -0.17 -3.09 9.80 -26.73 -0.26 -3.35 16 25 C -0.21 -3.54 10.36 -26.72 -0.28 -3.82 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.15 7.68 -51.93 -0.40 0.76 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.91 7.87 -51.93 -0.41 0.51 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.06 1.07 7.28 -51.93 -0.38 0.69 16 39 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 40 H 0.10 1.77 6.95 -51.93 -0.36 1.41 16 41 H 0.11 2.16 6.72 -51.93 -0.35 1.81 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -33.68 348.72 -9.43 -43.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.73 Total: 1.76 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.58 Total: -7.63 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.35 Total: -35.91 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.69 Total: -23.89 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.68 -9.43 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331804095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.043 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds