Wall clock time and date at job start Tue Mar 31 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47352 * 2 1 4 4 C 1.52999 * 109.47066 * 239.99669 * 2 1 3 5 5 C 1.53003 * 109.46984 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47222 * 60.00277 * 5 4 2 7 7 C 1.52999 * 109.46915 * 299.99765 * 6 5 4 8 8 C 1.53000 * 109.47084 * 119.99980 * 2 1 3 9 9 H 1.09007 * 109.46991 * 299.99907 * 8 2 1 10 10 O 1.42895 * 109.47328 * 59.99701 * 8 2 1 11 11 C 1.42899 * 114.00429 * 210.00145 * 10 8 2 12 12 C 1.50700 * 109.47663 * 180.02562 * 11 10 8 13 13 O 1.21296 * 119.99604 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00345 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00175 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99878 * 222.43487 * 15 14 12 17 17 C 1.38952 * 119.99643 * 42.42894 * 15 14 12 18 18 N 1.31408 * 120.00537 * 19.29473 * 17 15 14 19 19 Si 1.86800 * 119.99700 * 199.29022 * 17 15 14 20 20 H 1.48502 * 109.47231 * 60.00231 * 19 17 15 21 21 H 1.48498 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47463 * 300.00531 * 19 17 15 23 23 C 1.46499 * 119.99842 * 359.97438 * 14 12 11 24 24 C 1.53000 * 117.49918 * 183.39265 * 23 14 12 25 25 C 1.52998 * 117.49798 * 114.73427 * 23 14 12 26 26 H 1.09007 * 109.47131 * 300.00199 * 1 2 3 27 27 H 1.09005 * 109.47373 * 60.00065 * 1 2 3 28 28 H 1.09007 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46987 * 60.00295 * 4 2 1 30 30 H 1.08996 * 109.47395 * 299.99818 * 4 2 1 31 31 H 1.08997 * 109.47296 * 300.00247 * 5 4 2 32 32 H 1.08997 * 109.47094 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47064 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47010 * 59.99795 * 6 5 4 35 35 H 1.08996 * 109.47395 * 300.00389 * 7 6 5 36 36 H 1.08999 * 109.46987 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47136 * 300.00334 * 11 10 8 38 38 H 1.09006 * 109.47298 * 59.99843 * 11 10 8 39 39 H 0.96996 * 120.00565 * 174.73808 * 18 17 15 40 40 H 1.09001 * 115.55001 * 329.06927 * 23 14 12 41 41 H 1.08999 * 117.49500 * 0.02562 * 24 23 14 42 42 H 1.09000 * 117.49903 * 145.02078 * 24 23 14 43 43 H 1.08997 * 117.50178 * 214.98029 * 25 23 14 44 44 H 1.09006 * 117.49831 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0399 -0.7212 1.2492 9 1 1.6766 -0.2074 2.1393 10 8 1.5636 -2.0685 1.2493 11 6 1.3698 -2.6165 2.5548 12 6 0.8696 -4.0330 2.4359 13 8 0.6965 -4.5251 1.3408 14 7 0.6155 -4.7535 3.5462 15 6 0.1610 -6.0423 3.4381 16 1 -0.6314 -6.3915 4.0836 17 6 0.7196 -6.8994 2.4978 18 7 1.8994 -6.6324 1.9843 19 14 -0.2064 -8.4312 1.9637 20 1 -1.5072 -8.0394 1.3639 21 1 0.5991 -9.1718 0.9597 22 1 -0.4472 -9.3006 3.1433 23 6 0.8261 -4.1596 4.8688 24 6 0.5961 -5.0532 6.0892 25 6 -0.4052 -3.9458 5.7514 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6766 -0.2075 -2.1392 30 1 1.6766 -1.7490 -1.2492 31 1 3.9337 0.3056 -1.2486 32 1 3.9333 -1.2353 -2.1390 33 1 5.1695 -1.4434 0.0008 34 1 3.7157 -2.4710 0.0002 35 1 3.9331 0.3054 1.2498 36 1 3.9320 -1.2365 2.1396 37 1 2.3161 -2.6099 3.0957 38 1 0.6379 -2.0165 3.0957 39 1 2.3232 -7.2677 1.3864 40 1 1.6239 -3.4195 4.9302 41 1 0.2884 -6.0831 5.9080 42 1 1.2423 -4.9008 6.9536 43 1 -0.4173 -3.0653 6.3937 44 1 -1.3720 -4.2474 5.3482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331804109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:37 Heat of formation + Delta-G solvation = -59.800357 kcal Electronic energy + Delta-G solvation = -23561.722126 eV Core-core repulsion = 20286.887689 eV Total energy + Delta-G solvation = -3274.834437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.37286 -38.35569 -36.19925 -35.23238 -32.70042 -32.38658 -30.93776 -29.91128 -27.47545 -25.89629 -24.29650 -22.28285 -21.72168 -21.25755 -21.05984 -19.52721 -19.11486 -16.59386 -16.05822 -15.85736 -15.42014 -15.05320 -14.52843 -14.43701 -13.98539 -13.87011 -13.49798 -13.31688 -13.06663 -12.75012 -12.31794 -12.29093 -11.89339 -11.67038 -11.38301 -11.31272 -11.18532 -10.96796 -10.86206 -10.81211 -10.63754 -10.55711 -10.25734 -10.18123 -10.08872 -9.96740 -9.75266 -9.72679 -8.94406 -8.67178 -7.87971 -6.98741 -6.06116 -3.80784 3.33172 3.41185 3.44465 3.92914 4.17152 4.38281 4.77348 4.82159 4.92410 4.95328 5.09167 5.33234 5.33821 5.37137 5.48453 5.55779 5.62544 5.65226 5.68689 5.72557 5.75554 5.82332 5.86332 5.95671 6.00345 6.02749 6.10799 6.13890 6.21074 6.21365 6.35607 6.39749 6.44499 6.51535 6.52349 6.63329 6.73078 6.80787 6.92445 7.62805 7.74164 8.31680 9.09159 9.23530 9.70002 10.35411 11.02693 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.005562 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.813864 B = 5033.222322 C = 5773.586864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.139 4.139 8 C 0.090 3.910 9 H 0.053 0.947 10 O -0.342 6.342 11 C 0.052 3.948 12 C 0.483 3.517 13 O -0.510 6.510 14 N -0.428 5.428 15 C -0.350 4.350 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.828 5.828 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.073 3.927 24 C -0.173 4.173 25 C -0.208 4.208 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 13.086 1.177 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.176 4.176 8 C 0.031 3.969 9 H 0.071 0.929 10 O -0.260 6.260 11 C -0.028 4.028 12 C 0.269 3.731 13 O -0.385 6.385 14 N -0.152 5.152 15 C -0.477 4.477 16 H 0.095 0.905 17 C -0.138 4.138 18 N -0.462 5.462 19 Si 0.740 3.260 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.204 1.204 23 C -0.034 4.034 24 C -0.210 4.210 25 C -0.247 4.247 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.017 12.685 0.188 12.846 hybrid contribution -0.128 -0.537 0.257 0.609 sum 1.889 12.148 0.445 12.302 Atomic orbital electron populations 1.21787 0.94886 1.03099 1.00631 1.21164 0.96093 0.98035 0.94739 0.90980 1.21526 0.95134 1.02167 0.96193 1.21487 0.96021 0.99692 0.97992 1.21423 0.99091 1.01147 0.93720 1.21991 0.96319 1.00338 0.99001 1.22075 0.92904 0.84540 0.97383 0.92895 1.88081 1.85938 1.25902 1.26058 1.22364 0.99228 0.95824 0.85412 1.19428 0.83122 0.85204 0.85319 1.90547 1.51593 1.70585 1.25782 1.42686 1.60663 1.11382 1.00436 1.18771 1.18929 0.86707 1.23266 0.90470 1.25213 0.94334 0.97770 0.96450 1.69822 1.12880 1.35002 1.28450 0.86276 0.80146 0.81253 0.78326 1.19975 1.21212 1.20448 1.21700 0.97121 0.99896 0.84653 1.23068 1.02298 0.97786 0.97869 1.23335 0.96230 1.00289 1.04859 0.93315 0.93158 0.91161 0.92740 0.90300 0.92889 0.92362 0.92821 0.90347 0.91853 0.91976 0.92742 0.92612 0.92547 0.88262 0.87422 0.89816 0.89831 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.05 37.15 0.34 -1.63 16 2 C -0.08 -1.09 2.55 -90.62 -0.23 -1.32 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.58 5.06 -26.73 -0.14 -1.71 16 5 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 6 C -0.12 -1.70 5.78 -26.73 -0.15 -1.85 16 7 C -0.14 -1.90 5.63 -26.76 -0.15 -2.05 16 8 C 0.09 1.34 2.35 -26.76 -0.06 1.28 16 9 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 10 O -0.34 -6.79 7.49 -55.14 -0.41 -7.20 16 11 C 0.05 1.06 4.84 36.01 0.17 1.23 16 12 C 0.48 12.63 7.05 -10.99 -0.08 12.55 16 13 O -0.51 -15.65 14.12 -14.36 -0.20 -15.85 16 14 N -0.43 -10.85 2.85 -107.73 -0.31 -11.16 16 15 C -0.35 -9.65 8.00 -14.93 -0.12 -9.77 16 16 H 0.08 2.05 7.18 -52.49 -0.38 1.67 16 17 C 0.07 2.09 4.35 -17.47 -0.08 2.02 16 18 N -0.83 -24.98 11.64 55.50 0.65 -24.34 16 19 Si 0.91 22.30 29.60 -169.99 -5.03 17.27 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.07 1.45 5.87 -67.93 -0.40 1.05 16 24 C -0.17 -3.09 9.80 -26.69 -0.26 -3.35 16 25 C -0.21 -3.52 10.36 -26.70 -0.28 -3.80 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.88 7.86 -51.93 -0.41 0.47 16 37 H 0.05 1.03 7.29 -51.93 -0.38 0.65 16 38 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 39 H 0.26 7.68 8.32 -40.82 -0.34 7.34 16 40 H 0.10 1.76 6.95 -51.93 -0.36 1.40 16 41 H 0.11 2.14 6.68 -51.93 -0.35 1.80 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -32.91 346.35 -9.36 -42.26 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.68 Total: 2.79 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.59 Total: -8.99 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.34 Total: -35.50 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.62 Total: -23.05 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.91 -9.36 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331804109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.538 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds