Wall clock time and date at job start Tue Mar 31 2020 06:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.27747 * 2 1 4 4 C 1.54948 * 110.30996 * 237.80240 * 2 1 3 5 5 C 1.55449 * 100.99082 * 204.68744 * 4 2 1 6 6 H 1.08995 * 110.83571 * 275.89620 * 5 4 2 7 7 C 1.52997 * 110.92307 * 152.22767 * 5 4 2 8 8 C 1.54383 * 102.18476 * 34.04208 * 5 4 2 9 9 H 1.09001 * 109.83089 * 98.29628 * 8 5 4 10 10 C 1.50697 * 109.83240 * 219.17647 * 8 5 4 11 11 O 1.21286 * 119.99403 * 90.40338 * 10 8 5 12 12 N 1.34776 * 120.00552 * 270.40681 * 10 8 5 13 13 C 1.46496 * 119.99531 * 356.37792 * 12 10 8 14 14 C 1.50706 * 109.47413 * 108.89576 * 13 12 10 15 15 H 1.07997 * 119.99658 * 358.80668 * 14 13 12 16 16 C 1.37875 * 120.00108 * 178.80877 * 14 13 12 17 17 N 1.31519 * 120.00200 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00009 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46958 * 89.99743 * 18 16 14 20 20 H 1.48494 * 109.47561 * 209.99942 * 18 16 14 21 21 H 1.48506 * 109.47245 * 330.00015 * 18 16 14 22 22 C 1.46496 * 120.00236 * 176.09769 * 12 10 8 23 23 C 1.53004 * 109.46994 * 94.59192 * 22 12 10 24 24 C 1.52996 * 117.49938 * 243.36639 * 23 22 12 25 25 C 1.52993 * 117.50063 * 174.74109 * 23 22 12 26 26 O 1.43237 * 107.66313 * 338.73953 * 8 5 4 27 27 H 1.09004 * 109.46670 * 299.35873 * 1 2 3 28 28 H 1.08994 * 109.47510 * 59.35826 * 1 2 3 29 29 H 1.08996 * 109.46946 * 179.36382 * 1 2 3 30 30 H 1.08992 * 111.12285 * 322.56261 * 4 2 1 31 31 H 1.09005 * 111.12095 * 86.68104 * 4 2 1 32 32 H 1.09001 * 109.47120 * 315.35502 * 7 5 4 33 33 H 1.09005 * 109.46778 * 75.35500 * 7 5 4 34 34 H 1.08996 * 109.47534 * 195.35275 * 7 5 4 35 35 H 1.09002 * 109.47176 * 228.89884 * 13 12 10 36 36 H 1.09000 * 109.47388 * 348.89176 * 13 12 10 37 37 H 0.96994 * 119.99793 * 180.02562 * 17 16 14 38 38 H 1.08991 * 109.47514 * 214.58998 * 22 12 10 39 39 H 1.09004 * 109.47292 * 334.59536 * 22 12 10 40 40 H 1.09002 * 115.54829 * 29.06795 * 23 22 12 41 41 H 1.09000 * 117.50221 * 359.97438 * 24 23 22 42 42 H 1.08997 * 117.50239 * 145.02079 * 24 23 22 43 43 H 1.09008 * 117.50036 * 214.97785 * 25 23 22 44 44 H 1.08997 * 117.49778 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0678 -0.7743 -1.2297 5 6 3.4710 -1.2053 -0.7180 6 1 4.1992 -0.4078 -0.8654 7 6 3.9287 -2.4958 -1.4006 8 6 3.2113 -1.4412 0.7854 9 1 3.0630 -2.5047 0.9726 10 6 4.3813 -0.9387 1.5914 11 8 4.3948 0.2060 1.9917 12 7 5.4126 -1.7614 1.8672 13 6 5.3608 -3.1654 1.4523 14 6 6.3319 -3.3914 0.3221 15 1 6.9139 -2.5671 -0.0627 16 6 6.4771 -4.6505 -0.2206 17 7 5.7687 -5.6545 0.2484 18 14 7.6801 -4.9305 -1.6218 19 1 9.0111 -5.2867 -1.0678 20 1 7.1896 -6.0373 -2.4818 21 1 7.7962 -3.6900 -2.4299 22 6 6.5880 -1.2500 2.5766 23 6 6.4364 -1.5192 4.0751 24 6 6.3560 -0.3077 5.0059 25 6 7.6200 -1.1692 4.9790 26 8 2.0286 -0.7157 1.1413 27 1 -0.3633 0.5039 0.8957 28 1 -0.3634 0.5237 -0.8841 29 1 -0.3633 -1.0276 -0.0114 30 1 1.4471 -1.6429 -1.4492 31 1 2.1489 -0.1225 -2.0996 32 1 3.1042 -3.2085 -1.4205 33 1 4.2433 -2.2754 -2.4207 34 1 4.7648 -2.9229 -0.8469 35 1 5.6287 -3.8033 2.2946 36 1 4.3521 -3.4087 1.1188 37 1 5.8712 -6.5403 -0.1332 38 1 7.4823 -1.7509 2.2062 39 1 6.6762 -0.1768 2.4074 40 1 5.8446 -2.3962 4.3377 41 1 6.4115 0.6812 4.5509 42 1 5.7112 -0.3873 5.8811 43 1 7.8069 -1.8157 5.8366 44 1 8.5070 -0.7475 4.5062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331808390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:20 Heat of formation + Delta-G solvation = -63.890743 kcal Electronic energy + Delta-G solvation = -23710.275004 eV Core-core repulsion = 20435.263195 eV Total energy + Delta-G solvation = -3275.011809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09160 -38.26127 -36.67831 -34.91424 -33.00457 -32.57664 -31.85566 -28.09206 -27.35005 -26.31813 -24.96347 -22.99201 -22.01803 -21.10215 -20.76097 -19.93469 -18.38878 -17.18282 -16.65053 -15.88742 -15.77109 -15.09694 -14.59036 -14.46538 -14.12489 -13.99514 -13.46370 -13.23498 -12.83713 -12.65439 -12.41287 -12.13076 -11.91901 -11.83958 -11.69824 -11.49710 -11.24891 -11.19446 -10.99999 -10.95078 -10.83827 -10.79835 -10.34684 -10.28641 -10.10266 -9.89722 -9.73586 -9.60982 -9.49665 -8.73059 -8.41626 -7.71718 -6.27744 -4.32548 3.16825 3.24846 3.25848 3.29481 3.72821 4.17785 4.24471 4.37586 4.78633 4.96978 5.04144 5.13775 5.15962 5.31209 5.38486 5.42513 5.48912 5.52664 5.65961 5.75419 5.86142 5.87303 5.91147 5.97103 6.09394 6.15978 6.19097 6.21302 6.28357 6.33928 6.37626 6.42473 6.56164 6.65534 6.70830 6.81903 7.11783 7.34267 7.43905 7.53067 7.67111 7.96292 8.36333 8.70566 9.01904 9.31341 10.77955 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.008335 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.002792 B = 3358.712157 C = 5534.465740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.068 0.932 4 C -0.148 4.148 5 C -0.097 4.097 6 H 0.079 0.921 7 C -0.184 4.184 8 C 0.068 3.932 9 H 0.109 0.891 10 C 0.505 3.495 11 O -0.560 6.560 12 N -0.589 5.589 13 C 0.228 3.772 14 C -0.533 4.533 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.883 5.883 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.151 3.849 23 C -0.157 4.157 24 C -0.176 4.176 25 C -0.180 4.180 26 O -0.359 6.359 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.135 0.865 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 6.269 -0.018 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.086 0.914 4 C -0.186 4.186 5 C -0.116 4.116 6 H 0.098 0.902 7 C -0.240 4.240 8 C 0.008 3.992 9 H 0.126 0.874 10 C 0.292 3.708 11 O -0.439 6.439 12 N -0.320 5.320 13 C 0.109 3.891 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.520 5.520 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.176 4.176 24 C -0.213 4.213 25 C -0.218 4.218 26 O -0.277 6.277 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.153 0.847 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.014 6.645 0.362 7.772 hybrid contribution 0.761 -0.404 -0.948 1.281 sum -3.253 6.241 -0.586 7.062 Atomic orbital electron populations 1.21858 0.94030 1.02611 1.01977 1.22938 0.94346 0.95802 0.85251 0.91431 1.23484 0.96519 1.00585 0.98013 1.22472 0.96706 1.00369 0.92052 0.90242 1.22533 1.05487 0.94923 1.01081 1.22884 0.84660 0.97223 0.94459 0.87363 1.20768 0.84105 0.85671 0.80212 1.90579 1.80061 1.19115 1.54164 1.48138 1.16409 1.12758 1.54700 1.19646 0.98474 0.75257 0.95746 1.21320 1.23605 0.94790 1.17440 0.91737 1.24931 0.95697 0.95722 0.97146 1.69920 1.39661 1.00846 1.41559 0.86595 0.81326 0.78232 0.82049 1.20402 1.20953 1.19557 1.20827 0.89024 0.99327 0.88056 1.22748 1.01748 0.99424 0.93696 1.22951 1.00345 0.96093 1.01960 1.22893 0.92682 1.03986 1.02232 1.88433 1.40245 1.64881 1.34187 0.92078 0.91535 0.91971 0.90172 0.90307 0.93330 0.93570 0.84720 0.94885 0.93581 0.92311 0.89677 0.91017 0.87852 0.88877 0.89569 0.89222 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.62 37.16 0.36 -1.44 16 2 C 0.07 1.15 4.08 -25.70 -0.10 1.04 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.15 -2.14 6.04 -24.40 -0.15 -2.29 16 5 C -0.10 -1.71 3.12 -88.60 -0.28 -1.99 16 6 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 7 C -0.18 -3.39 8.96 37.16 0.33 -3.05 16 8 C 0.07 1.35 2.96 -27.16 -0.08 1.27 16 9 H 0.11 2.19 5.50 -51.93 -0.29 1.91 16 10 C 0.51 11.01 6.74 -10.99 -0.07 10.94 16 11 O -0.56 -13.37 16.27 -12.30 -0.20 -13.57 16 12 N -0.59 -12.45 2.53 -175.06 -0.44 -12.89 16 13 C 0.23 5.19 4.88 -5.19 -0.03 5.16 16 14 C -0.53 -12.75 6.06 -34.44 -0.21 -12.96 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.07 1.70 5.13 -17.82 -0.09 1.61 16 17 N -0.88 -22.79 13.29 55.43 0.74 -22.05 16 18 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 C 0.15 2.89 5.64 -4.04 -0.02 2.87 16 23 C -0.16 -2.71 6.01 -90.62 -0.54 -3.25 16 24 C -0.18 -2.72 10.18 -26.73 -0.27 -3.00 16 25 C -0.18 -2.56 10.25 -26.73 -0.27 -2.83 16 26 O -0.36 -6.98 10.39 -53.08 -0.55 -7.54 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.09 7.79 -51.93 -0.40 0.69 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.85 7.92 -51.93 -0.41 0.44 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.14 2.89 2.89 -51.93 -0.15 2.74 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.07 4.55 -51.93 -0.24 0.84 16 37 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.09 1.62 7.73 -51.93 -0.40 1.22 16 39 H 0.07 1.39 7.08 -51.93 -0.37 1.02 16 40 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 41 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -27.33 348.01 -8.94 -36.28 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.28 Total: 8.09 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.43 Total: -7.92 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.29 Total: -34.94 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.75 Total: -21.11 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.33 -8.94 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331808390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.615 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds