Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.33171 * 2 1 4 4 C 1.54478 * 110.46602 * 237.69078 * 2 1 3 5 5 C 1.54513 * 104.06058 * 217.14131 * 4 2 1 6 6 H 1.09000 * 110.50665 * 118.64531 * 5 4 2 7 7 C 1.52996 * 110.51198 * 241.35269 * 5 4 2 8 8 C 1.54480 * 104.06159 * 0.02562 * 5 4 2 9 9 H 1.09000 * 110.37091 * 265.14505 * 8 5 4 10 10 C 1.50694 * 110.46408 * 142.85792 * 8 5 4 11 11 O 1.21281 * 120.00096 * 268.60662 * 10 8 5 12 12 N 1.34784 * 120.00294 * 88.61079 * 10 8 5 13 13 C 1.46495 * 120.00231 * 185.56027 * 12 10 8 14 14 C 1.50703 * 109.47305 * 89.99824 * 13 12 10 15 15 H 1.07998 * 120.00146 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99981 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99902 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47192 * 89.99573 * 18 16 14 20 20 H 1.48500 * 109.46769 * 209.99607 * 18 16 14 21 21 H 1.48495 * 109.47117 * 329.99341 * 18 16 14 22 22 C 1.46503 * 119.99471 * 5.55279 * 12 10 8 23 23 C 1.53004 * 109.46931 * 95.33929 * 22 12 10 24 24 C 1.52995 * 117.49673 * 243.74432 * 23 22 12 25 25 C 1.52996 * 117.50089 * 175.08422 * 23 22 12 26 26 O 1.44422 * 110.37245 * 122.24835 * 2 1 3 27 27 H 1.08999 * 109.47025 * 299.20526 * 1 2 3 28 28 H 1.09007 * 109.46909 * 59.20327 * 1 2 3 29 29 H 1.08997 * 109.47276 * 179.20011 * 1 2 3 30 30 H 1.08996 * 110.50951 * 335.78462 * 4 2 1 31 31 H 1.09000 * 110.51170 * 98.49663 * 4 2 1 32 32 H 1.08996 * 109.47299 * 182.17422 * 7 5 4 33 33 H 1.09004 * 109.47277 * 302.17320 * 7 5 4 34 34 H 1.08997 * 109.47369 * 62.16960 * 7 5 4 35 35 H 1.09002 * 109.46938 * 209.99861 * 13 12 10 36 36 H 1.09006 * 109.47047 * 329.99403 * 13 12 10 37 37 H 0.96996 * 119.99703 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.46630 * 215.33307 * 22 12 10 39 39 H 1.08994 * 109.47552 * 335.33635 * 22 12 10 40 40 H 1.09000 * 115.54933 * 29.40911 * 23 22 12 41 41 H 1.09008 * 117.49993 * 359.97438 * 24 23 22 42 42 H 1.08999 * 117.49886 * 145.01546 * 24 23 22 43 43 H 1.08994 * 117.50355 * 214.98069 * 25 23 22 44 44 H 1.09007 * 117.49623 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0701 -0.7736 -1.2232 5 6 3.3208 -1.5031 -0.6837 6 1 3.2002 -2.5829 -0.7708 7 6 4.5744 -1.0405 -1.4287 8 6 3.3878 -1.0845 0.8018 9 1 4.0514 -0.2286 0.9253 10 6 3.8554 -2.2366 1.6533 11 8 3.0462 -2.9924 2.1482 12 7 5.1728 -2.4271 1.8650 13 6 5.6342 -3.6137 2.5895 14 6 5.8865 -4.7326 1.6120 15 1 5.7194 -4.5757 0.5566 16 6 6.3296 -5.9571 2.0651 17 7 6.5327 -6.1485 3.3504 18 14 6.6416 -7.3442 0.8535 19 1 8.0500 -7.2860 0.3863 20 1 6.3946 -8.6482 1.5197 21 1 5.7283 -7.2012 -0.3085 22 6 6.1432 -1.4473 1.3703 23 6 6.4861 -0.4602 2.4878 24 6 6.1069 1.0068 2.2755 25 6 7.5744 0.5773 2.2047 26 8 2.0327 -0.7224 1.1450 27 1 -0.3633 0.5014 0.8970 28 1 -0.3633 0.5262 -0.8828 29 1 -0.3634 -1.0275 -0.0143 30 1 1.3314 -1.4927 -1.5769 31 1 2.3450 -0.0833 -2.0207 32 1 5.4396 -1.5928 -1.0620 33 1 4.4515 -1.2247 -2.4961 34 1 4.7253 0.0256 -1.2591 35 1 6.5573 -3.3795 3.1198 36 1 4.8720 -3.9216 3.3054 37 1 6.8448 -7.0098 3.6691 38 1 7.0488 -1.9627 1.0503 39 1 5.7155 -0.9064 0.5263 40 1 6.4193 -0.8557 3.5013 41 1 5.6135 1.2687 1.3395 42 1 5.7909 1.5764 3.1494 43 1 8.2234 0.8646 3.0320 44 1 8.0465 0.5562 1.2224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331808416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = -61.266587 kcal Electronic energy + Delta-G solvation = -23610.912235 eV Core-core repulsion = 20336.014218 eV Total energy + Delta-G solvation = -3274.898017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27262 -38.31313 -37.07497 -34.45100 -33.55814 -32.52326 -31.94941 -28.21310 -27.12694 -26.65191 -25.45864 -22.80479 -22.28865 -21.49687 -20.69076 -20.49729 -18.56652 -16.94568 -16.42424 -16.05843 -15.96576 -15.08702 -14.86513 -14.70245 -14.38898 -13.94984 -13.81824 -13.44175 -13.06886 -12.81917 -12.60907 -12.34504 -12.19136 -11.99466 -11.96174 -11.64216 -11.44502 -11.24187 -11.18767 -11.10237 -10.88084 -10.61534 -10.60556 -10.47765 -10.32587 -10.08757 -9.79540 -9.67771 -9.59989 -8.72501 -8.42649 -7.65471 -6.03451 -4.08365 3.24319 3.29860 3.36835 3.40006 3.61469 3.92113 4.27925 4.44535 4.51162 4.72215 4.87402 4.92567 4.97581 5.03826 5.13320 5.16697 5.30194 5.30994 5.34751 5.40823 5.46943 5.59046 5.59904 5.68883 5.71475 5.78134 5.84574 5.87917 5.99366 6.02246 6.08355 6.13188 6.15112 6.18421 6.28067 6.47577 6.87746 7.12954 7.47581 7.56124 7.93309 8.24104 8.41348 8.90712 9.10690 9.56624 11.04663 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014157 B = 0.006135 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.276321 B = 4562.983536 C = 5559.706487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.066 0.934 4 C -0.144 4.144 5 C -0.114 4.114 6 H 0.091 0.909 7 C -0.150 4.150 8 C 0.060 3.940 9 H 0.085 0.915 10 C 0.516 3.484 11 O -0.523 6.523 12 N -0.591 5.591 13 C 0.246 3.754 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.130 3.870 23 C -0.165 4.165 24 C -0.185 4.185 25 C -0.175 4.175 26 O -0.344 6.344 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 16.375 -9.072 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.182 4.182 5 C -0.133 4.133 6 H 0.109 0.891 7 C -0.207 4.207 8 C -0.001 4.001 9 H 0.102 0.898 10 C 0.301 3.699 11 O -0.399 6.399 12 N -0.323 5.323 13 C 0.127 3.873 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.006 3.994 23 C -0.185 4.185 24 C -0.222 4.222 25 C -0.213 4.213 26 O -0.262 6.262 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.393 15.746 -8.453 18.191 hybrid contribution 0.457 -0.732 -0.728 1.129 sum -2.936 15.014 -9.181 17.842 Atomic orbital electron populations 1.21784 0.93213 1.03133 1.02106 1.22990 0.95422 0.95204 0.85508 0.91584 1.23086 0.97358 0.99598 0.98153 1.22418 0.95612 1.02264 0.93025 0.89082 1.21993 0.97332 1.01018 1.00403 1.23093 0.85937 0.97062 0.94034 0.89754 1.19844 0.83034 0.85479 0.81502 1.90677 1.53071 1.46674 1.49431 1.48088 1.04159 1.23917 1.56157 1.19301 0.95536 0.80264 0.92181 1.21424 1.44778 0.96516 0.93854 0.92475 1.24927 0.95448 0.98401 0.95250 1.69936 1.45978 1.24364 1.12939 0.86516 0.78348 0.81536 0.81142 1.20630 1.21086 1.19929 1.21317 0.94301 0.89748 0.94062 1.22937 1.03176 0.90499 1.01867 1.23038 0.98225 0.98166 1.02799 1.22905 0.91527 1.03930 1.02940 1.89250 1.25682 1.74105 1.37180 0.91872 0.91363 0.91567 0.90372 0.90378 0.91101 0.91829 0.92406 0.94790 0.93737 0.92716 0.89557 0.90511 0.87248 0.89176 0.89066 0.88925 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.53 37.16 0.35 -1.21 16 2 C 0.07 0.84 3.92 -25.96 -0.10 0.74 16 3 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 4 C -0.14 -1.67 6.28 -25.16 -0.16 -1.83 16 5 C -0.11 -1.64 3.25 -89.05 -0.29 -1.93 16 6 H 0.09 1.56 7.87 -51.93 -0.41 1.15 16 7 C -0.15 -1.71 7.76 37.16 0.29 -1.42 16 8 C 0.06 1.02 2.61 -27.11 -0.07 0.95 16 9 H 0.08 1.24 5.14 -51.93 -0.27 0.97 16 10 C 0.52 11.50 6.82 -10.98 -0.07 11.42 16 11 O -0.52 -14.28 16.26 -12.20 -0.20 -14.47 16 12 N -0.59 -12.71 2.46 -175.06 -0.43 -13.14 16 13 C 0.25 6.49 5.23 -5.20 -0.03 6.46 16 14 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.13 4.95 -4.04 -0.02 2.11 16 23 C -0.17 -2.41 6.01 -90.62 -0.54 -2.96 16 24 C -0.19 -2.17 9.72 -26.70 -0.26 -2.43 16 25 C -0.18 -2.01 10.25 -26.70 -0.27 -2.28 16 26 O -0.34 -6.13 10.72 -52.99 -0.57 -6.70 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 31 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 32 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 35 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 1.34 7.35 -51.93 -0.38 0.96 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 39 H 0.08 1.06 2.91 -51.93 -0.15 0.90 16 40 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.09 0.95 7.42 -51.92 -0.39 0.56 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -33.74 351.01 -9.13 -42.87 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.34 Total: 1.15 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.60 Total: -5.90 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.31 Total: -39.04 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.77 Total: -21.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.74 -9.13 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331808416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.393 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds