Wall clock time and date at job start Tue Mar 31 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46804 * 2 1 4 4 H 1.09000 * 110.33466 * 307.24267 * 3 2 1 5 5 C 1.54489 * 110.36721 * 184.99744 * 3 2 1 6 6 C 1.54509 * 104.05843 * 217.18766 * 5 3 2 7 7 C 1.54477 * 104.06487 * 0.02562 * 6 5 3 8 8 H 1.09001 * 110.37737 * 265.14569 * 7 6 5 9 9 C 1.50709 * 110.37251 * 142.81054 * 7 6 5 10 10 O 1.21286 * 119.99870 * 250.50180 * 9 7 6 11 11 N 1.34777 * 120.00073 * 70.49719 * 9 7 6 12 12 C 1.46503 * 119.99760 * 4.78052 * 11 9 7 13 13 C 1.50705 * 109.46773 * 90.90090 * 12 11 9 14 14 H 1.07994 * 120.00350 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99440 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00433 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99511 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46943 * 90.00173 * 17 15 13 19 19 H 1.48503 * 109.47114 * 209.99697 * 17 15 13 20 20 H 1.48499 * 109.47436 * 329.99816 * 17 15 13 21 21 C 1.46504 * 119.99840 * 184.77884 * 11 9 7 22 22 C 1.53000 * 109.46858 * 93.97566 * 21 11 9 23 23 C 1.52996 * 117.50124 * 243.74485 * 22 21 11 24 24 C 1.52998 * 117.49699 * 175.08233 * 22 21 11 25 25 O 1.44421 * 104.80503 * 23.98002 * 7 6 5 26 26 H 1.09000 * 109.47074 * 60.00329 * 1 2 3 27 27 H 1.09003 * 109.47459 * 300.00312 * 1 2 3 28 28 H 1.09005 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46573 * 119.99515 * 2 1 3 30 30 H 1.08996 * 109.47110 * 239.99563 * 2 1 3 31 31 H 1.08998 * 110.51081 * 335.82997 * 5 3 2 32 32 H 1.08997 * 110.50930 * 98.55101 * 5 3 2 33 33 H 1.09003 * 110.50967 * 118.64711 * 6 5 3 34 34 H 1.09007 * 110.51322 * 241.35634 * 6 5 3 35 35 H 1.08997 * 109.46833 * 210.89440 * 12 11 9 36 36 H 1.08991 * 109.47278 * 330.89956 * 12 11 9 37 37 H 0.96999 * 120.00412 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46753 * 213.97710 * 21 11 9 39 39 H 1.08991 * 109.47062 * 333.97616 * 21 11 9 40 40 H 1.09002 * 115.54742 * 29.42378 * 22 21 11 41 41 H 1.09003 * 117.49615 * 0.02562 * 23 22 21 42 42 H 1.08996 * 117.49783 * 145.02525 * 23 22 21 43 43 H 1.09002 * 117.50076 * 214.98073 * 24 22 21 44 44 H 1.09004 * 117.49598 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5829 2.0058 -0.8137 5 6 3.5794 1.4686 -0.1262 6 6 4.0106 2.6420 0.7819 7 6 2.6807 3.1856 1.3497 8 1 2.3216 4.0179 0.7444 9 6 2.8593 3.6164 2.7828 10 8 2.3514 2.9736 3.6771 11 7 3.5835 4.7161 3.0706 12 6 4.1091 5.5511 1.9877 13 6 3.1095 6.6284 1.6538 14 1 2.1760 6.6850 2.1938 15 6 3.3868 7.5416 0.6588 16 7 4.5238 7.4730 0.0015 17 14 2.1475 8.8765 0.2444 18 1 2.4153 10.0763 1.0773 19 1 2.2671 9.2343 -1.1919 20 1 0.7750 8.3800 0.5182 21 6 3.8451 5.0762 4.4664 22 6 5.1923 4.4943 4.8993 23 6 5.1836 3.4452 6.0129 24 6 5.7027 4.8573 6.2952 25 8 1.7632 2.0731 1.2698 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 4.0078 0.5320 0.2308 32 1 3.8748 1.6561 -1.1584 33 1 4.6522 2.2855 1.5877 34 1 4.5193 3.4095 0.1985 35 1 5.0455 6.0101 2.3047 36 1 4.2866 4.9345 1.1067 37 1 4.7191 8.1157 -0.6983 38 1 3.8702 6.1616 4.5629 39 1 3.0549 4.6733 5.0998 40 1 5.9319 4.3810 4.1067 41 1 4.2180 3.1692 6.4368 42 1 5.9178 2.6418 5.9531 43 1 6.7782 4.9822 6.4211 44 1 5.0785 5.5103 6.9053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331936928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:22 Heat of formation + Delta-G solvation = -69.957235 kcal Electronic energy + Delta-G solvation = -23220.567684 eV Core-core repulsion = 19945.292812 eV Total energy + Delta-G solvation = -3275.274872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90724 -38.33805 -36.77134 -34.74022 -33.42479 -32.51298 -31.73352 -28.91829 -27.57693 -26.08007 -23.82012 -22.93609 -22.09022 -21.46065 -20.74982 -20.38136 -18.50624 -16.76149 -16.47559 -16.14246 -15.89769 -15.32102 -14.66262 -14.39246 -14.36976 -13.89742 -13.57355 -13.37929 -13.23786 -13.00253 -12.64685 -12.30858 -11.97864 -11.69142 -11.56780 -11.43892 -11.26916 -11.21517 -11.12860 -10.95040 -10.84792 -10.70666 -10.51497 -10.34235 -10.27758 -10.10788 -9.72332 -9.57887 -9.49452 -8.83481 -8.57213 -7.72783 -6.21870 -4.29124 3.21055 3.28180 3.30166 3.37533 3.58289 4.11435 4.28799 4.46763 4.77062 4.88539 5.07122 5.11306 5.17370 5.21897 5.24569 5.27955 5.37408 5.41138 5.56235 5.60724 5.79430 5.82601 5.85452 5.95258 5.96532 5.99520 6.03546 6.14114 6.15466 6.24413 6.25745 6.28780 6.36608 6.37060 6.41363 6.59816 6.78425 7.07225 7.22260 7.55730 7.73873 8.02398 8.31821 8.76802 9.03013 9.39232 10.84596 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.007173 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.972931 B = 3902.722163 C = 5907.883126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.070 3.930 4 H 0.069 0.931 5 C -0.148 4.148 6 C -0.140 4.140 7 C 0.063 3.937 8 H 0.105 0.895 9 C 0.526 3.474 10 O -0.554 6.554 11 N -0.591 5.591 12 C 0.230 3.770 13 C -0.540 4.540 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.150 3.850 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.179 4.179 25 O -0.346 6.346 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -9.627 1.011 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.012 3.988 4 H 0.087 0.913 5 C -0.186 4.186 6 C -0.178 4.178 7 C 0.003 3.997 8 H 0.123 0.877 9 C 0.313 3.687 10 O -0.433 6.433 11 N -0.323 5.323 12 C 0.110 3.890 13 C -0.579 4.579 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.026 3.974 22 C -0.179 4.179 23 C -0.214 4.214 24 C -0.217 4.217 25 O -0.265 6.265 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.403 -9.928 1.476 10.045 hybrid contribution -0.290 1.074 -0.569 1.249 sum 0.113 -8.854 0.907 8.901 Atomic orbital electron populations 1.21736 0.95438 1.01185 1.02458 1.21555 0.96646 0.94653 1.02355 1.23066 0.94188 0.94185 0.87378 0.91314 1.22983 0.95974 0.99129 1.00499 1.22892 0.97151 0.98136 0.99625 1.22833 0.90161 0.91320 0.95423 0.87693 1.20001 0.78312 0.80571 0.89822 1.90599 1.49047 1.55270 1.48429 1.48044 1.51925 1.24835 1.07477 1.19597 0.95057 0.89770 0.84537 1.21531 1.04036 1.13132 1.19163 0.92044 1.24924 0.95497 0.97593 0.95678 1.69910 1.22820 1.36740 1.23489 0.86530 0.81666 0.81914 0.77630 1.20455 1.21026 1.19710 1.20840 0.93782 0.99695 0.83043 1.22794 0.99974 1.03174 0.91988 1.22985 1.02638 0.92135 1.03684 1.22908 1.00783 0.98720 0.99265 1.89209 1.57399 1.43360 1.36498 0.92930 0.91804 0.93056 0.91135 0.91000 0.90825 0.90449 0.90919 0.88759 0.94488 0.93788 0.92500 0.90005 0.90574 0.87820 0.88753 0.89519 0.89145 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.85 37.16 0.37 -1.43 16 2 C -0.11 -1.41 5.56 -26.73 -0.15 -1.55 16 3 C 0.07 1.03 3.25 -25.95 -0.08 0.95 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -2.02 6.63 -25.16 -0.17 -2.18 16 6 C -0.14 -2.32 5.78 -25.16 -0.15 -2.47 16 7 C 0.06 1.25 2.75 -27.10 -0.07 1.18 16 8 H 0.11 2.20 7.63 -51.93 -0.40 1.80 16 9 C 0.53 11.59 6.93 -10.98 -0.08 11.51 16 10 O -0.55 -13.50 16.06 -13.59 -0.22 -13.72 16 11 N -0.59 -12.57 2.46 -175.05 -0.43 -12.99 16 12 C 0.23 5.32 4.85 -5.19 -0.03 5.30 16 13 C -0.54 -13.89 9.30 -34.44 -0.32 -14.21 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 17 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.15 2.84 5.77 -4.04 -0.02 2.81 16 22 C -0.16 -2.62 6.01 -90.62 -0.54 -3.17 16 23 C -0.18 -2.59 10.18 -26.69 -0.27 -2.87 16 24 C -0.18 -2.41 10.25 -26.69 -0.27 -2.69 16 25 O -0.35 -6.71 10.40 -54.37 -0.57 -7.28 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.21 7.86 -51.93 -0.41 0.81 16 34 H 0.09 1.58 6.68 -51.93 -0.35 1.23 16 35 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.04 1.02 4.53 -51.93 -0.24 0.78 16 37 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 38 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 39 H 0.08 1.48 6.98 -51.93 -0.36 1.12 16 40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -29.22 356.94 -9.61 -38.83 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.60 Total: 4.81 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.89 Total: -7.20 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.31 Total: -36.18 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.78 Total: -21.00 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.22 -9.61 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.131 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds