Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 H 1.09001 * 110.27580 * 304.36920 * 3 2 1 5 5 C 1.54943 * 110.39324 * 182.21300 * 3 2 1 6 6 C 1.55302 * 100.94515 * 204.59762 * 5 3 2 7 7 C 1.54385 * 102.24878 * 34.13609 * 6 5 3 8 8 H 1.09004 * 109.90446 * 98.19743 * 7 6 5 9 9 C 1.50704 * 109.83158 * 219.12471 * 7 6 5 10 10 O 1.21283 * 119.99082 * 106.08964 * 9 7 6 11 11 N 1.34774 * 120.00049 * 286.09391 * 9 7 6 12 12 C 1.46494 * 120.00053 * 4.90096 * 11 9 7 13 13 C 1.50707 * 109.46951 * 275.13261 * 12 11 9 14 14 H 1.07996 * 120.00219 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99812 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99898 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46992 * 60.00271 * 17 15 13 19 19 H 1.48498 * 109.46926 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47303 * 300.00179 * 17 15 13 21 21 C 1.46503 * 119.99721 * 184.90423 * 11 9 7 22 22 C 1.52996 * 109.46949 * 265.28161 * 21 11 9 23 23 C 1.53004 * 117.49855 * 243.62257 * 22 21 11 24 24 C 1.53005 * 60.00132 * 252.50997 * 23 22 21 25 25 O 1.43230 * 107.59009 * 338.64331 * 7 6 5 26 26 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47084 * 299.99544 * 1 2 3 28 28 H 1.09003 * 109.47435 * 59.99894 * 1 2 3 29 29 H 1.09000 * 109.46925 * 240.00721 * 2 1 3 30 30 H 1.08998 * 109.47088 * 120.00418 * 2 1 3 31 31 H 1.08995 * 111.12631 * 322.52445 * 5 3 2 32 32 H 1.09002 * 111.11993 * 86.64180 * 5 3 2 33 33 H 1.09000 * 110.84988 * 275.94924 * 6 5 3 34 34 H 1.08992 * 110.84966 * 152.32308 * 6 5 3 35 35 H 1.08990 * 109.47467 * 35.13349 * 12 11 9 36 36 H 1.09000 * 109.46759 * 155.13647 * 12 11 9 37 37 H 0.96998 * 120.00162 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47090 * 145.28006 * 21 11 9 39 39 H 1.09003 * 109.46850 * 25.28117 * 21 11 9 40 40 H 1.09006 * 115.55287 * 29.32894 * 22 21 11 41 41 H 1.09001 * 117.49836 * 359.97438 * 23 22 21 42 42 H 1.08997 * 117.49999 * 145.02296 * 23 22 21 43 43 H 1.08999 * 117.50008 * 252.51290 * 24 23 22 44 44 H 1.08997 * 117.49861 * 107.48530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9911 -0.8440 5 6 3.5882 1.4679 -0.0561 6 6 3.8839 2.8506 0.5861 7 6 2.7550 2.9742 1.6319 8 1 3.1271 2.6868 2.6153 9 6 2.2483 4.3930 1.6719 10 8 1.1715 4.6661 1.1852 11 7 2.9916 5.3581 2.2485 12 6 4.3370 5.0510 2.7401 13 6 4.2455 4.4857 4.1342 14 1 3.2816 4.3667 4.6064 15 6 5.3924 4.1204 4.8066 16 7 6.5662 4.2658 4.2317 17 14 5.2791 3.4205 6.5348 18 1 4.4649 2.1787 6.5134 19 1 6.6429 3.1102 7.0336 20 1 4.6393 4.4165 7.4313 21 6 2.4542 6.7142 2.3835 22 6 2.9155 7.5659 1.1992 23 6 3.8199 8.7629 1.4997 24 6 2.3620 8.9884 1.0939 25 8 1.6988 2.0920 1.2351 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.0160 0.6596 0.5370 32 1 3.9446 1.4278 -1.0854 33 1 3.8140 3.6459 -0.1560 34 1 4.8614 2.8533 1.0683 35 1 4.8064 4.3201 2.0818 36 1 4.9347 5.9623 2.7561 37 1 7.3732 4.0093 4.7049 38 1 2.8147 7.1571 3.3119 39 1 1.3650 6.6735 2.3994 40 1 3.0900 7.0237 0.2698 41 1 4.0859 8.9438 2.5412 42 1 4.5897 9.0083 0.7680 43 1 2.1727 9.3821 0.0953 44 1 1.6692 9.3175 1.8684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331936929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = -70.998706 kcal Electronic energy + Delta-G solvation = -23284.064674 eV Core-core repulsion = 20008.744640 eV Total energy + Delta-G solvation = -3275.320034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94255 -38.27052 -36.77484 -34.70184 -33.38589 -32.49937 -31.74490 -28.92209 -27.55675 -26.00601 -23.79683 -22.86062 -22.07843 -21.41336 -20.88536 -20.28750 -18.40986 -17.04367 -16.51178 -16.02771 -15.71612 -15.45269 -14.59619 -14.49752 -14.42013 -13.76083 -13.47487 -13.25448 -13.05658 -12.75129 -12.65623 -12.28270 -11.99645 -11.69913 -11.60886 -11.47358 -11.26176 -11.19463 -11.10932 -10.98502 -10.85900 -10.69970 -10.54451 -10.33098 -10.26776 -10.11194 -9.77117 -9.60886 -9.51709 -8.63205 -8.48139 -7.71053 -6.21092 -4.28568 3.23351 3.28124 3.29461 3.36842 3.71578 4.14738 4.27405 4.39748 4.78888 4.86974 5.04290 5.11769 5.18757 5.24889 5.26789 5.34447 5.41829 5.45919 5.51481 5.71401 5.78679 5.85261 5.88942 5.93980 5.99856 6.01726 6.12327 6.14934 6.17340 6.25467 6.26471 6.36073 6.36938 6.45953 6.52105 6.59624 6.80434 7.18540 7.38492 7.58480 7.74918 8.03833 8.34022 8.78029 9.05973 9.39697 10.85085 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.007195 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.930996 B = 3890.491042 C = 5822.228816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.066 0.934 5 C -0.150 4.150 6 C -0.139 4.139 7 C 0.069 3.931 8 H 0.123 0.877 9 C 0.507 3.493 10 O -0.561 6.561 11 N -0.592 5.592 12 C 0.231 3.769 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.150 3.850 22 C -0.156 4.156 23 C -0.178 4.178 24 C -0.181 4.181 25 O -0.353 6.353 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 -1.713 -7.993 9.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C 0.020 3.980 4 H 0.084 0.916 5 C -0.188 4.188 6 C -0.177 4.177 7 C 0.009 3.991 8 H 0.141 0.859 9 C 0.294 3.706 10 O -0.440 6.440 11 N -0.324 5.324 12 C 0.112 3.888 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.027 3.973 22 C -0.175 4.175 23 C -0.215 4.215 24 C -0.219 4.219 25 O -0.272 6.272 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.387 -1.639 -8.088 9.346 hybrid contribution 0.442 -0.183 0.938 1.053 sum -3.945 -1.822 -7.151 8.367 Atomic orbital electron populations 1.21705 0.95447 1.00937 1.02538 1.21639 0.96750 0.95011 1.02272 1.23011 0.93657 0.93270 0.88054 0.91610 1.23315 0.95854 0.97955 1.01686 1.23061 0.99984 0.97072 0.97589 1.22703 0.86936 0.88220 1.01283 0.85930 1.20829 0.84589 0.87440 0.77720 1.90588 1.22750 1.83254 1.47444 1.48140 1.18570 1.07953 1.57708 1.19580 0.77039 0.97665 0.94552 1.21502 0.93306 1.43062 1.00140 0.92099 1.24919 0.95105 0.95358 0.98206 1.69905 0.97696 1.47257 1.37959 0.86607 0.77204 0.79771 0.84258 1.19965 1.21133 1.20123 1.20845 0.98877 0.82004 0.95623 1.22754 1.03867 0.89871 1.01007 1.23018 0.93003 1.03081 1.02375 1.22893 0.97023 0.99678 1.02303 1.88462 1.42053 1.57615 1.39024 0.93203 0.91773 0.93029 0.91153 0.91211 0.90059 0.90215 0.90973 0.88003 0.93990 0.94290 0.92450 0.90461 0.90545 0.88235 0.88597 0.89290 0.89301 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.83 37.16 0.37 -1.48 16 2 C -0.12 -1.49 5.68 -26.73 -0.15 -1.64 16 3 C 0.08 1.19 3.43 -25.70 -0.09 1.10 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.15 -2.07 6.57 -24.49 -0.16 -2.23 16 6 C -0.14 -2.34 5.37 -24.79 -0.13 -2.47 16 7 C 0.07 1.38 3.14 -27.16 -0.09 1.29 16 8 H 0.12 2.65 6.88 -51.93 -0.36 2.29 16 9 C 0.51 11.16 6.82 -10.98 -0.07 11.08 16 10 O -0.56 -13.60 16.12 -13.82 -0.22 -13.82 16 11 N -0.59 -12.61 2.47 -175.06 -0.43 -13.05 16 12 C 0.23 5.34 4.90 -5.19 -0.03 5.32 16 13 C -0.54 -13.76 8.28 -34.44 -0.29 -14.04 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.15 2.85 5.68 -4.04 -0.02 2.83 16 22 C -0.16 -2.59 6.01 -90.62 -0.54 -3.13 16 23 C -0.18 -2.57 10.18 -26.73 -0.27 -2.84 16 24 C -0.18 -2.48 10.25 -26.72 -0.27 -2.75 16 25 O -0.35 -6.90 9.92 -54.60 -0.54 -7.44 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.92 7.91 -51.92 -0.41 0.51 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.06 8.06 -51.93 -0.42 0.65 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 34 H 0.10 1.77 6.75 -51.93 -0.35 1.42 16 35 H 0.04 0.97 4.76 -51.93 -0.25 0.72 16 36 H 0.04 0.95 8.03 -51.93 -0.42 0.54 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.08 1.44 7.84 -51.93 -0.41 1.04 16 39 H 0.08 1.49 7.35 -51.93 -0.38 1.11 16 40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.10 1.39 8.03 -51.93 -0.42 0.98 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -28.83 355.26 -9.57 -38.39 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.59 Total: 5.65 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.85 Total: -7.33 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.30 Total: -36.05 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.76 Total: -21.27 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.83 -9.57 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.607 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds