Wall clock time and date at job start Tue Mar 31 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47119 * 2 1 4 4 H 1.09000 * 109.82169 * 54.30192 * 3 2 1 5 5 C 1.54388 * 109.83026 * 175.18992 * 3 2 1 6 6 C 1.55303 * 102.24946 * 140.87039 * 5 3 2 7 7 C 1.54944 * 100.94619 * 325.86172 * 6 5 3 8 8 H 1.08993 * 110.31087 * 277.43497 * 7 6 5 9 9 C 1.50698 * 110.31073 * 155.35852 * 7 6 5 10 10 O 1.21280 * 120.00507 * 252.18410 * 9 7 6 11 11 N 1.34784 * 119.99420 * 72.18057 * 9 7 6 12 12 C 1.46497 * 119.99701 * 185.36873 * 11 9 7 13 13 C 1.50698 * 109.47192 * 90.00230 * 12 11 9 14 14 H 1.07997 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00238 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99794 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47272 * 59.99974 * 17 15 13 19 19 H 1.48493 * 109.46918 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46728 * 299.99678 * 17 15 13 21 21 C 1.46496 * 120.00256 * 5.37415 * 11 9 7 22 22 C 1.52995 * 109.47342 * 94.63014 * 21 11 9 23 23 C 1.52996 * 117.50230 * 243.74838 * 22 21 11 24 24 C 1.53005 * 117.50027 * 175.08663 * 22 21 11 25 25 O 1.43244 * 109.82752 * 293.41287 * 3 2 1 26 26 H 1.09004 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47394 * 59.99828 * 1 2 3 28 28 H 1.09007 * 109.46966 * 299.99727 * 1 2 3 29 29 H 1.08995 * 109.47226 * 120.00299 * 2 1 3 30 30 H 1.09007 * 109.46966 * 240.00273 * 2 1 3 31 31 H 1.08998 * 110.84356 * 259.06015 * 5 3 2 32 32 H 1.08996 * 110.84735 * 22.47318 * 5 3 2 33 33 H 1.08994 * 111.12637 * 83.78811 * 6 5 3 34 34 H 1.09004 * 111.12023 * 207.90361 * 6 5 3 35 35 H 1.09000 * 109.47336 * 210.00670 * 12 11 9 36 36 H 1.09006 * 109.47375 * 330.00342 * 12 11 9 37 37 H 0.96996 * 119.99901 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.47035 * 214.63307 * 21 11 9 39 39 H 1.09003 * 109.46981 * 334.63401 * 21 11 9 40 40 H 1.09004 * 115.55121 * 29.41893 * 22 21 11 41 41 H 1.09004 * 117.49675 * 359.97438 * 23 22 21 42 42 H 1.09003 * 117.49978 * 145.01734 * 23 22 21 43 43 H 1.09001 * 117.49681 * 214.97894 * 24 22 21 44 44 H 1.08993 * 117.49704 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9904 0.8327 5 6 3.5790 1.4539 0.1218 6 6 3.9771 2.6064 -0.8401 7 6 2.8934 2.4610 -1.9379 8 1 3.1790 1.6884 -2.6516 9 6 2.6863 3.7752 -2.6457 10 8 1.6739 4.4147 -2.4534 11 7 3.6263 4.2398 -3.4926 12 6 3.4811 5.5696 -4.0899 13 6 4.1363 6.5942 -3.2001 14 1 4.6136 6.2857 -2.2817 15 6 4.1274 7.9255 -3.5589 16 7 3.5475 8.3010 -4.6780 17 14 4.9403 9.1955 -2.4563 18 1 6.3824 8.8732 -2.3095 19 1 4.7940 10.5433 -3.0623 20 1 4.2910 9.1796 -1.1208 21 6 4.7931 3.4151 -3.8158 22 6 4.5261 2.6368 -5.1056 23 6 4.4791 1.1104 -5.0129 24 6 5.6733 1.8008 -5.6766 25 8 1.6971 2.0791 -1.2366 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.8855 1.6779 1.1435 32 1 4.0013 0.5050 -0.2088 33 1 3.9065 3.5742 -0.3440 34 1 4.9752 2.4493 -1.2493 35 1 3.9576 5.5816 -5.0701 36 1 2.4224 5.8059 -4.1977 37 1 3.5416 9.2375 -4.9306 38 1 5.6644 4.0558 -3.9517 39 1 4.9802 2.7152 -3.0013 40 1 3.8532 3.1189 -5.8148 41 1 4.6389 0.6606 -4.0329 42 1 3.7756 0.5882 -5.6613 43 1 5.7548 1.7325 -6.7615 44 1 6.6183 1.8056 -5.1336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331936930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:27 Heat of formation + Delta-G solvation = -65.438914 kcal Electronic energy + Delta-G solvation = -23240.166957 eV Core-core repulsion = 19965.088014 eV Total energy + Delta-G solvation = -3275.078943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12201 -38.35953 -37.07237 -34.40496 -33.52461 -32.61542 -31.95292 -29.05591 -27.51526 -26.13235 -24.26061 -22.54507 -22.29789 -21.81266 -20.84419 -20.46389 -18.57033 -17.39051 -16.43092 -16.28535 -15.73558 -15.13216 -14.85456 -14.59581 -14.35717 -14.03742 -13.71645 -13.63374 -13.17686 -12.93689 -12.75262 -12.36537 -12.00227 -11.83605 -11.75286 -11.60720 -11.46809 -11.24690 -11.19818 -10.96650 -10.93371 -10.83218 -10.66077 -10.55821 -10.32728 -10.09001 -9.81148 -9.62792 -9.56294 -8.64375 -8.42072 -7.65214 -6.03082 -4.08083 3.31419 3.32241 3.36751 3.38588 3.56647 3.90405 4.22560 4.44142 4.47989 4.61981 4.86434 4.92422 5.01934 5.08238 5.10687 5.12412 5.18949 5.30714 5.31941 5.42209 5.45738 5.51046 5.66887 5.68362 5.74947 5.79748 5.85621 5.87542 5.91808 5.98808 6.08383 6.09912 6.17679 6.23505 6.29616 6.46329 6.99588 7.20709 7.47770 7.56890 7.93616 8.24552 8.42473 8.91075 9.12105 9.56884 11.04986 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.005487 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.456672 B = 5101.584937 C = 6191.055159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.079 0.921 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.063 3.937 8 H 0.088 0.912 9 C 0.510 3.490 10 O -0.523 6.523 11 N -0.593 5.593 12 C 0.247 3.753 13 C -0.528 4.528 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.137 3.863 22 C -0.165 4.165 23 C -0.186 4.186 24 C -0.176 4.176 25 O -0.346 6.346 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -18.155 5.424 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.097 0.903 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.002 3.998 8 H 0.105 0.895 9 C 0.295 3.705 10 O -0.398 6.398 11 N -0.325 5.325 12 C 0.128 3.872 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.012 3.988 22 C -0.185 4.185 23 C -0.223 4.223 24 C -0.213 4.213 25 O -0.264 6.264 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.821 -17.580 5.339 18.588 hybrid contribution 0.752 0.690 0.529 1.150 sum 3.573 -16.889 5.868 18.233 Atomic orbital electron populations 1.21711 0.95303 1.01081 1.02629 1.21896 0.97070 0.95825 1.02044 1.22831 0.94099 0.93337 0.87987 0.90281 1.23177 0.95494 0.99104 1.00886 1.23266 0.98870 1.00247 0.95906 1.22942 0.85919 0.95978 0.94977 0.89467 1.20095 0.83880 0.86291 0.80256 1.90679 1.27428 1.58912 1.62771 1.48093 1.20816 1.18669 1.44971 1.19281 0.98849 0.75905 0.93154 1.21389 1.36194 0.91917 1.07157 0.92554 1.24925 0.95470 0.98316 0.95286 1.69923 1.43653 1.17043 1.22629 0.86575 0.79653 0.80421 0.80869 1.20264 1.21163 1.20210 1.21147 0.90150 0.93679 0.93797 1.22939 1.02227 0.92514 1.00771 1.23048 1.01641 0.95406 1.02185 1.22904 0.93421 1.04660 1.00330 1.88594 1.27738 1.77706 1.32385 0.93155 0.91720 0.92908 0.91296 0.91588 0.89908 0.90341 0.89445 0.89226 0.94840 0.93775 0.92659 0.89515 0.91227 0.87247 0.89099 0.89095 0.88947 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.82 37.16 0.37 -1.24 16 2 C -0.13 -1.34 5.50 -26.73 -0.15 -1.49 16 3 C 0.08 0.96 3.51 -26.00 -0.09 0.87 16 4 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 5 C -0.15 -1.57 6.55 -24.78 -0.16 -1.73 16 6 C -0.15 -1.95 6.04 -24.48 -0.15 -2.10 16 7 C 0.06 1.04 2.89 -26.86 -0.08 0.96 16 8 H 0.09 1.26 6.55 -51.93 -0.34 0.92 16 9 C 0.51 11.19 7.01 -10.98 -0.08 11.11 16 10 O -0.52 -14.18 16.12 -13.66 -0.22 -14.40 16 11 N -0.59 -12.61 2.46 -175.06 -0.43 -13.04 16 12 C 0.25 6.49 5.22 -5.20 -0.03 6.46 16 13 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.14 2.20 5.40 -4.05 -0.02 2.17 16 22 C -0.17 -2.35 6.01 -90.62 -0.54 -2.90 16 23 C -0.19 -2.11 9.67 -26.69 -0.26 -2.37 16 24 C -0.18 -1.97 10.26 -26.69 -0.27 -2.24 16 25 O -0.35 -6.02 9.91 -54.45 -0.54 -6.56 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.82 7.89 -51.93 -0.41 0.42 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.09 1.01 6.48 -51.93 -0.34 0.67 16 35 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.04 1.33 7.36 -51.93 -0.38 0.94 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 39 H 0.07 0.92 4.14 -51.93 -0.22 0.71 16 40 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.09 0.92 7.60 -51.93 -0.39 0.52 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -33.60 354.99 -9.52 -43.13 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.52 Total: 0.66 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.88 Total: -6.03 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.31 Total: -38.95 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.76 Total: -20.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.60 -9.52 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.313 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds