Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46981 * 2 1 4 4 H 1.09008 * 110.42158 * 55.85692 * 3 2 1 5 5 C 1.54477 * 110.37287 * 178.16135 * 3 2 1 6 6 C 1.54508 * 104.06327 * 142.80746 * 5 3 2 7 7 C 1.54480 * 104.06429 * 0.02562 * 6 5 3 8 8 H 1.09003 * 110.37645 * 94.84865 * 7 6 5 9 9 C 1.50697 * 110.37044 * 217.18748 * 7 6 5 10 10 O 1.21285 * 119.99903 * 106.73807 * 9 7 6 11 11 N 1.34773 * 120.00099 * 286.72824 * 9 7 6 12 12 C 1.46501 * 119.99942 * 5.04138 * 11 9 7 13 13 C 1.50697 * 109.47396 * 89.99742 * 12 11 9 14 14 H 1.08004 * 119.99569 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00193 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99934 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47017 * 60.00019 * 17 15 13 19 19 H 1.48494 * 109.47091 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46800 * 300.00312 * 17 15 13 21 21 C 1.46506 * 120.00034 * 185.03844 * 11 9 7 22 22 C 1.53000 * 109.47210 * 94.87670 * 21 11 9 23 23 C 1.53001 * 117.49972 * 243.54866 * 22 21 11 24 24 C 1.52999 * 117.49955 * 174.92542 * 22 21 11 25 25 O 1.44427 * 104.80004 * 336.01446 * 7 6 5 26 26 H 1.09002 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47367 * 300.00033 * 1 2 3 28 28 H 1.09004 * 109.47312 * 59.99876 * 1 2 3 29 29 H 1.09000 * 109.47367 * 239.99967 * 2 1 3 30 30 H 1.09003 * 109.46992 * 119.99685 * 2 1 3 31 31 H 1.09003 * 110.51416 * 24.16958 * 5 3 2 32 32 H 1.08995 * 110.51719 * 261.45746 * 5 3 2 33 33 H 1.08992 * 110.51558 * 241.35665 * 6 5 3 34 34 H 1.09011 * 110.50852 * 118.64639 * 6 5 3 35 35 H 1.09005 * 109.46843 * 210.00183 * 12 11 9 36 36 H 1.09003 * 109.46786 * 329.99327 * 12 11 9 37 37 H 0.96998 * 120.00505 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46693 * 214.87701 * 21 11 9 39 39 H 1.08993 * 109.47148 * 334.87592 * 21 11 9 40 40 H 1.09003 * 115.54994 * 29.25833 * 22 21 11 41 41 H 1.09000 * 117.49713 * 359.97438 * 23 22 21 42 42 H 1.08991 * 117.49962 * 145.01921 * 23 22 21 43 43 H 1.08994 * 117.49774 * 214.98144 * 24 22 21 44 44 H 1.08999 * 117.49767 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6261 1.9922 0.8455 5 6 3.5838 1.4671 0.0465 6 6 3.9678 2.6571 -0.8611 7 6 2.6105 3.2112 -1.3481 8 1 2.2845 4.0321 -0.7093 9 6 2.7140 3.6685 -2.7802 10 8 2.2013 3.0150 -3.6640 11 7 3.3760 4.8038 -3.0789 12 6 4.0885 5.5344 -2.0279 13 6 5.5056 5.0299 -1.9375 14 1 5.8418 4.2433 -2.5969 15 6 6.3730 5.5725 -1.0132 16 7 5.9634 6.5299 -0.2101 17 14 8.1294 4.9466 -0.9008 18 1 8.8140 5.1567 -2.2017 19 1 8.8516 5.6873 0.1645 20 1 8.1187 3.4977 -0.5755 21 6 3.3832 5.3071 -4.4548 22 6 2.2685 6.3411 -4.6254 23 6 1.1441 6.0119 -5.6095 24 6 2.1850 7.0754 -5.9651 25 8 1.6974 2.0973 -1.2407 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9927 0.5375 -0.3494 32 1 3.9327 1.6356 1.0652 33 1 4.5665 2.3158 -1.7056 34 1 4.5065 3.4140 -0.2909 35 1 4.0959 6.5981 -2.2660 36 1 3.5860 5.3794 -1.0731 37 1 6.5735 6.9114 0.4405 38 1 4.3460 5.7725 -4.6663 39 1 3.2201 4.4797 -5.1452 40 1 2.0045 6.9003 -3.7278 41 1 1.1988 5.0589 -6.1356 42 1 0.1401 6.3543 -5.3592 43 1 1.8657 8.1174 -5.9488 44 1 2.9245 6.8221 -6.7248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331936931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = -70.128365 kcal Electronic energy + Delta-G solvation = -23318.441279 eV Core-core repulsion = 20043.158987 eV Total energy + Delta-G solvation = -3275.282293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85989 -38.31000 -36.76628 -34.76252 -33.38094 -32.51803 -31.55796 -28.88764 -27.52768 -26.12244 -23.71313 -22.94862 -22.06984 -21.37348 -20.67761 -20.28643 -18.51087 -16.70559 -16.51844 -16.04756 -15.88655 -15.29000 -14.68314 -14.51935 -14.17939 -13.89123 -13.38106 -13.28630 -13.19664 -12.88812 -12.66283 -12.39925 -12.02033 -11.55548 -11.49637 -11.31347 -11.24933 -11.23454 -11.05933 -10.93030 -10.80394 -10.68086 -10.44264 -10.24408 -10.16639 -10.11348 -9.75553 -9.57093 -9.45360 -8.86069 -8.54960 -7.73496 -6.22668 -4.29044 3.20314 3.26139 3.27868 3.36331 3.60514 4.12042 4.27992 4.50436 4.87200 4.99928 5.10069 5.10827 5.22228 5.26394 5.33078 5.35036 5.44576 5.48868 5.59585 5.64512 5.80159 5.86068 5.90623 5.96260 6.01200 6.06866 6.14154 6.15698 6.21452 6.26319 6.32588 6.37561 6.42260 6.59310 6.59744 6.74657 6.84225 7.08898 7.26308 7.54948 7.72555 8.01089 8.31218 8.75377 9.02971 9.37520 10.83716 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.007793 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.053013 B = 3592.121291 C = 5979.880066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.071 3.929 4 H 0.066 0.934 5 C -0.152 4.152 6 C -0.129 4.129 7 C 0.067 3.933 8 H 0.088 0.912 9 C 0.525 3.475 10 O -0.555 6.555 11 N -0.592 5.592 12 C 0.235 3.765 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.150 3.850 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.179 4.179 25 O -0.349 6.349 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -4.832 -0.378 7.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.084 0.916 5 C -0.190 4.190 6 C -0.167 4.167 7 C 0.007 3.993 8 H 0.105 0.895 9 C 0.313 3.687 10 O -0.434 6.434 11 N -0.324 5.324 12 C 0.115 3.885 13 C -0.571 4.571 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.027 3.973 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.217 4.217 25 O -0.268 6.268 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.619 -5.103 -0.827 8.399 hybrid contribution 1.274 0.029 0.409 1.339 sum -5.345 -5.074 -0.417 7.381 Atomic orbital electron populations 1.21721 0.95530 1.01114 1.02338 1.21557 0.96532 0.94751 1.02384 1.23042 0.94175 0.93754 0.87727 0.91621 1.23050 0.95457 0.99729 1.00796 1.22898 0.95902 0.97680 1.00180 1.22742 0.90957 0.90708 0.94938 0.89469 1.20013 0.78148 0.80720 0.89851 1.90598 1.48562 1.55222 1.49008 1.48061 1.50318 1.24041 1.09947 1.19486 0.91341 0.92508 0.85132 1.21424 0.95702 1.20829 1.19189 0.92067 1.24899 0.98625 0.94773 0.95350 1.69906 1.36192 1.25605 1.21155 0.86641 0.84395 0.79106 0.77901 1.20129 1.21171 1.19998 1.20837 0.96992 0.95343 0.84175 1.22796 0.99641 1.01585 0.93960 1.22975 0.94525 0.99943 1.03991 1.22893 1.02677 0.97164 0.98941 1.89179 1.55448 1.42495 1.39650 0.93117 0.93045 0.91822 0.91155 0.91024 0.91047 0.90691 0.90631 0.87374 0.94456 0.94508 0.92434 0.90069 0.90550 0.87776 0.88769 0.89472 0.89149 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.83 37.16 0.37 -1.43 16 2 C -0.11 -1.46 5.57 -26.73 -0.15 -1.61 16 3 C 0.07 1.08 3.27 -25.96 -0.08 0.99 16 4 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 5 C -0.15 -2.33 6.63 -25.16 -0.17 -2.49 16 6 C -0.13 -2.42 4.92 -25.16 -0.12 -2.54 16 7 C 0.07 1.33 2.77 -27.11 -0.07 1.25 16 8 H 0.09 1.67 7.02 -51.93 -0.36 1.31 16 9 C 0.53 11.53 6.93 -10.99 -0.08 11.46 16 10 O -0.55 -13.49 16.06 -13.50 -0.22 -13.71 16 11 N -0.59 -12.48 2.46 -175.05 -0.43 -12.91 16 12 C 0.24 5.36 4.74 -5.19 -0.02 5.33 16 13 C -0.53 -13.04 7.03 -34.44 -0.24 -13.28 16 14 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 15 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -23.42 13.29 55.43 0.74 -22.68 16 17 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.15 2.82 5.78 -4.04 -0.02 2.80 16 22 C -0.16 -2.65 6.01 -90.62 -0.54 -3.20 16 23 C -0.18 -2.62 10.18 -26.73 -0.27 -2.90 16 24 C -0.18 -2.43 10.25 -26.73 -0.27 -2.70 16 25 O -0.35 -6.75 10.27 -54.28 -0.56 -7.30 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.53 7.86 -51.93 -0.41 1.12 16 34 H 0.11 2.20 6.66 -51.92 -0.35 1.85 16 35 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.04 0.86 5.89 -51.93 -0.31 0.56 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 39 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -28.09 354.23 -9.57 -37.67 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.64 Total: 5.57 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.79 Total: -6.74 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.31 Total: -35.59 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.77 Total: -21.01 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.09 -9.57 -37.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331936931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.460 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds