Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 8 8 C 1.50703 * 109.47466 * 180.02562 * 6 5 4 9 9 O 1.21281 * 119.99994 * 120.00579 * 8 6 5 10 10 N 1.34770 * 119.99761 * 300.00109 * 8 6 5 11 11 C 1.47067 * 136.06035 * 359.62796 * 10 8 6 12 12 C 1.53233 * 88.08595 * 207.20181 * 11 10 8 13 13 O 1.42899 * 114.01511 * 87.71494 * 12 11 10 14 14 C 1.50696 * 114.32882 * 220.47044 * 12 11 10 15 15 H 1.08003 * 119.99804 * 93.75977 * 14 12 11 16 16 C 1.37872 * 120.00178 * 273.75744 * 14 12 11 17 17 N 1.31522 * 119.99874 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00364 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46682 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47137 * 120.00093 * 18 16 14 21 21 H 1.48499 * 109.47189 * 240.00495 * 18 16 14 22 22 C 1.47067 * 136.05502 * 179.97438 * 10 8 6 23 23 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 6 5 25 25 H 1.08993 * 109.47194 * 179.97438 * 24 23 6 26 26 C 1.53006 * 109.47127 * 59.99878 * 24 23 6 27 27 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.09003 * 113.46640 * 321.93732 * 11 10 8 35 35 H 1.09003 * 113.46620 * 92.37272 * 11 10 8 36 36 H 0.96705 * 113.99955 * 86.39286 * 13 12 11 37 37 H 0.97002 * 119.99308 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.47118 * 267.62630 * 22 10 8 39 39 H 1.08997 * 113.46724 * 38.00953 * 22 10 8 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 6 5 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 6 5 42 42 H 1.09001 * 109.46801 * 300.00272 * 26 24 23 43 43 H 1.08998 * 109.46505 * 59.99871 * 26 24 23 44 44 H 1.09000 * 109.47050 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7157 -2.4710 0.0001 8 6 5.5865 -1.4435 0.0010 9 8 6.1925 -0.9186 0.9110 10 7 6.2607 -2.0269 -1.0097 11 6 5.9069 -2.7460 -2.2428 12 6 7.2450 -3.4847 -2.1349 13 8 7.1915 -4.6722 -1.3418 14 6 7.9574 -3.6741 -3.4493 15 1 8.6981 -2.9566 -3.7703 16 6 7.6636 -4.7632 -4.2420 17 7 6.7613 -5.6366 -3.8513 18 14 8.5461 -4.9976 -5.8717 19 1 9.5067 -3.8843 -6.0789 20 1 9.2806 -6.2880 -5.8558 21 1 7.5529 -5.0068 -6.9757 22 6 7.6741 -2.2298 -1.3617 23 6 3.5694 -0.7222 1.2496 24 6 2.0394 -0.7216 1.2493 25 1 1.6761 -0.2082 2.1395 26 6 1.5289 -2.1639 1.2490 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6765 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3056 -1.2487 34 1 5.0417 -3.3995 -2.1311 35 1 5.8372 -2.0994 -3.1176 36 1 6.9209 -5.4607 -1.8320 37 1 6.5544 -6.4027 -4.4093 38 1 8.0798 -1.4445 -1.9995 39 1 8.3090 -2.4443 -0.5020 40 1 3.9331 0.3054 1.2498 41 1 3.9321 -1.2365 2.1396 42 1 1.8922 -2.6777 0.3590 43 1 1.8919 -2.6779 2.1390 44 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331994017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = -77.553400 kcal Electronic energy + Delta-G solvation = -23379.107931 eV Core-core repulsion = 20103.503665 eV Total energy + Delta-G solvation = -3275.604266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21095 -38.88477 -37.15124 -34.01512 -32.81351 -32.19790 -31.69207 -28.80087 -27.59092 -26.18784 -25.16174 -24.85762 -22.29878 -21.88974 -19.95810 -18.42903 -18.26306 -17.42366 -16.34325 -15.86034 -15.33170 -15.06587 -14.58258 -14.21531 -14.07629 -14.00781 -13.67340 -13.35065 -13.03662 -12.66571 -12.54408 -12.36318 -12.12602 -11.98457 -11.85140 -11.61009 -11.51520 -11.26047 -11.09431 -11.01157 -10.95903 -10.71860 -10.49902 -10.39174 -10.25266 -10.06251 -9.86386 -9.52169 -9.08142 -8.77344 -8.36354 -7.80671 -6.41582 -4.51779 3.12226 3.21887 3.25112 3.27182 3.62565 4.17140 4.63268 4.67681 4.70533 4.82408 5.10668 5.14822 5.23177 5.29656 5.38564 5.44290 5.54120 5.60020 5.63473 5.65246 5.78903 5.82199 5.90708 5.94599 5.96747 6.02416 6.09094 6.19628 6.22790 6.26374 6.29170 6.36114 6.42072 6.48316 6.52404 6.58235 6.68707 6.72108 7.11401 7.61942 7.80287 8.51455 8.58582 8.83898 9.19914 9.48748 10.65068 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.004368 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.278538 B = 6408.548872 C = 6876.134986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.098 4.098 7 H 0.095 0.905 8 C 0.538 3.462 9 O -0.567 6.567 10 N -0.633 5.633 11 C 0.075 3.925 12 C 0.239 3.761 13 O -0.572 6.572 14 C -0.533 4.533 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.105 3.895 23 C -0.092 4.092 24 C -0.085 4.085 25 H 0.069 0.931 26 C -0.155 4.155 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 7.025 3.312 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.119 4.119 7 H 0.113 0.887 8 C 0.328 3.672 9 O -0.448 6.448 10 N -0.366 5.366 11 C -0.048 4.048 12 C 0.197 3.803 13 O -0.385 6.385 14 C -0.571 4.571 15 H 0.091 0.909 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.018 4.018 23 C -0.129 4.129 24 C -0.104 4.104 25 H 0.087 0.913 26 C -0.212 4.212 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.207 7.624 4.368 14.241 hybrid contribution 0.163 -0.571 -1.385 1.507 sum -11.044 7.052 2.983 13.439 Atomic orbital electron populations 1.21887 0.95514 1.01884 1.01255 1.21165 0.95155 0.99420 0.94955 0.91337 1.21617 0.95006 1.01095 0.97297 1.21528 0.95665 1.00706 0.96978 1.21235 0.91704 1.01891 0.97109 0.88740 1.20111 0.89264 0.76942 0.80923 1.90616 1.70624 1.47024 1.36488 1.49711 1.10328 1.54621 1.21956 1.24110 1.02920 0.93656 0.84145 1.19518 0.89700 0.82640 0.88478 1.86049 1.91357 1.20069 1.41008 1.21485 1.23478 1.09713 1.02407 0.90907 1.25075 0.94144 0.95023 0.98781 1.69279 1.32126 1.13492 1.39031 0.86272 0.79548 0.78456 0.82224 1.19405 1.20606 1.20651 1.23313 0.83117 0.97306 0.98024 1.21352 0.93837 1.01030 0.96728 1.21142 0.95225 0.96422 0.97598 0.91262 1.22018 1.00666 0.96255 1.02230 0.92338 0.92968 0.92963 0.91411 0.91902 0.90919 0.91869 0.91846 0.90239 0.75022 0.91648 0.89866 0.91706 0.91492 0.91402 0.91931 0.92819 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.09 -0.92 2.50 -90.62 -0.23 -1.14 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.27 4.93 -26.73 -0.13 -1.40 16 5 C -0.11 -1.54 5.09 -26.73 -0.14 -1.67 16 6 C -0.10 -1.56 2.13 -91.77 -0.20 -1.75 16 7 H 0.09 1.50 6.43 -51.93 -0.33 1.17 16 8 C 0.54 11.05 7.40 -10.99 -0.08 10.96 16 9 O -0.57 -13.29 16.76 5.56 0.09 -13.19 16 10 N -0.63 -13.47 3.64 -185.36 -0.67 -14.14 16 11 C 0.07 1.58 6.14 -8.64 -0.05 1.53 16 12 C 0.24 5.71 1.57 -91.38 -0.14 5.57 16 13 O -0.57 -14.81 13.53 -35.23 -0.48 -15.29 16 14 C -0.53 -13.25 8.69 -34.44 -0.30 -13.55 16 15 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 17 N -0.90 -22.52 11.01 55.43 0.61 -21.91 16 18 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 C 0.10 2.32 8.04 -8.50 -0.07 2.26 16 23 C -0.09 -1.30 4.02 -26.73 -0.11 -1.41 16 24 C -0.09 -0.95 2.72 -90.62 -0.25 -1.20 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.15 -1.66 8.15 37.16 0.30 -1.35 16 27 H 0.06 0.50 6.42 -51.93 -0.33 0.17 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.60 8.05 -51.93 -0.42 1.18 16 36 H 0.39 10.25 6.33 45.56 0.29 10.53 16 37 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.07 1.00 8.10 -51.93 -0.42 0.57 16 41 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.52 6.42 -51.93 -0.33 0.18 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -27.60 336.34 -8.21 -35.81 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.66 Total: 11.90 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.15 Total: -2.43 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.06 Total: -36.05 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.38 Total: -28.48 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.60 -8.21 -35.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.743 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds