Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 8 8 C 1.50703 * 109.47466 * 180.02562 * 6 5 4 9 9 O 1.21281 * 119.99994 * 120.00579 * 8 6 5 10 10 N 1.34770 * 119.99761 * 300.00109 * 8 6 5 11 11 C 1.47067 * 136.06035 * 359.62796 * 10 8 6 12 12 C 1.53233 * 88.08595 * 207.20181 * 11 10 8 13 13 O 1.42899 * 114.01511 * 87.71494 * 12 11 10 14 14 C 1.50696 * 114.32882 * 220.47044 * 12 11 10 15 15 H 1.08003 * 119.99804 * 93.75977 * 14 12 11 16 16 C 1.37872 * 120.00178 * 273.75744 * 14 12 11 17 17 N 1.31522 * 119.99874 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00364 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46682 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47137 * 120.00093 * 18 16 14 21 21 H 1.48499 * 109.47189 * 240.00495 * 18 16 14 22 22 C 1.47067 * 136.05502 * 179.97438 * 10 8 6 23 23 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 6 5 25 25 H 1.08993 * 109.47194 * 179.97438 * 24 23 6 26 26 C 1.53006 * 109.47127 * 59.99878 * 24 23 6 27 27 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 29 29 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.09003 * 113.46640 * 321.93732 * 11 10 8 35 35 H 1.09003 * 113.46620 * 92.37272 * 11 10 8 36 36 H 0.96705 * 113.99955 * 86.39286 * 13 12 11 37 37 H 0.97002 * 119.99308 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.47118 * 267.62630 * 22 10 8 39 39 H 1.08997 * 113.46724 * 38.00953 * 22 10 8 40 40 H 1.09002 * 109.46935 * 299.99411 * 23 6 5 41 41 H 1.09001 * 109.46812 * 179.97438 * 23 6 5 42 42 H 1.09001 * 109.46801 * 300.00272 * 26 24 23 43 43 H 1.08998 * 109.46505 * 59.99871 * 26 24 23 44 44 H 1.09000 * 109.47050 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7157 -2.4710 0.0001 8 6 5.5865 -1.4435 0.0010 9 8 6.1925 -0.9186 0.9110 10 7 6.2607 -2.0269 -1.0097 11 6 5.9069 -2.7460 -2.2428 12 6 7.2450 -3.4847 -2.1349 13 8 7.1915 -4.6722 -1.3418 14 6 7.9574 -3.6741 -3.4493 15 1 8.6981 -2.9566 -3.7703 16 6 7.6636 -4.7632 -4.2420 17 7 6.7613 -5.6366 -3.8513 18 14 8.5461 -4.9976 -5.8717 19 1 9.5067 -3.8843 -6.0789 20 1 9.2806 -6.2880 -5.8558 21 1 7.5529 -5.0068 -6.9757 22 6 7.6741 -2.2298 -1.3617 23 6 3.5694 -0.7222 1.2496 24 6 2.0394 -0.7216 1.2493 25 1 1.6761 -0.2082 2.1395 26 6 1.5289 -2.1639 1.2490 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6765 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3056 -1.2487 34 1 5.0417 -3.3995 -2.1311 35 1 5.8372 -2.0994 -3.1176 36 1 6.9209 -5.4607 -1.8320 37 1 6.5544 -6.4027 -4.4093 38 1 8.0798 -1.4445 -1.9995 39 1 8.3090 -2.4443 -0.5020 40 1 3.9331 0.3054 1.2498 41 1 3.9321 -1.2365 2.1396 42 1 1.8922 -2.6777 0.3590 43 1 1.8919 -2.6779 2.1390 44 1 0.4389 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331994017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -94.269606 kcal Electronic energy + Delta-G solvation = -23379.832800 eV Core-core repulsion = 20103.503665 eV Total energy + Delta-G solvation = -3276.329136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68141 -40.27743 -38.77820 -35.91555 -34.13890 -33.94759 -32.65014 -30.48661 -28.58442 -27.59517 -26.90849 -26.26511 -23.35401 -23.08080 -21.58254 -19.99663 -19.38338 -19.23667 -17.94494 -17.38451 -16.90247 -16.65850 -16.03612 -15.78708 -15.34148 -15.15893 -14.91927 -14.62083 -14.57881 -14.05700 -13.84331 -13.73625 -13.43704 -13.36883 -13.29639 -12.80798 -12.79991 -12.73162 -12.59219 -12.23959 -12.17769 -12.15114 -12.00415 -11.70970 -11.41231 -11.24407 -11.05855 -10.87316 -10.79845 -10.60166 -10.19836 -9.58812 -8.28251 -6.45408 1.45724 1.50554 1.60449 1.62599 1.98038 2.40663 2.93800 3.40410 3.62924 3.70837 3.74828 4.02236 4.11629 4.15854 4.18279 4.32785 4.40109 4.42754 4.46609 4.55663 4.60196 4.72943 4.75593 4.78306 4.86719 4.89612 4.94610 5.00139 5.05837 5.08297 5.13949 5.18546 5.20181 5.23647 5.28136 5.37070 5.47211 5.52289 5.68456 5.72371 5.90156 6.60786 6.88835 7.14514 7.29064 7.48021 8.78297 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.004368 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.278538 B = 6408.548872 C = 6876.134986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.106 4.106 6 C -0.090 4.090 7 H 0.096 0.904 8 C 0.528 3.472 9 O -0.601 6.601 10 N -0.636 5.636 11 C 0.094 3.906 12 C 0.218 3.782 13 O -0.587 6.587 14 C -0.553 4.553 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.917 5.917 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.275 1.275 22 C 0.102 3.898 23 C -0.088 4.088 24 C -0.079 4.079 25 H 0.083 0.917 26 C -0.154 4.154 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.389 0.611 37 H 0.277 0.723 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 7.668 2.301 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.111 4.111 7 H 0.114 0.886 8 C 0.320 3.680 9 O -0.483 6.483 10 N -0.368 5.368 11 C -0.029 4.029 12 C 0.177 3.823 13 O -0.400 6.400 14 C -0.591 4.591 15 H 0.092 0.908 16 C -0.166 4.166 17 N -0.558 5.558 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.200 1.200 22 C -0.020 4.020 23 C -0.126 4.126 24 C -0.097 4.097 25 H 0.101 0.899 26 C -0.211 4.211 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.950 8.273 3.357 15.729 hybrid contribution 0.762 -0.784 -1.016 1.493 sum -12.187 7.489 2.341 14.495 Atomic orbital electron populations 1.21846 0.93717 1.02401 1.02142 1.21153 0.96561 0.98997 0.93760 0.91384 1.21608 0.92607 1.01732 0.98560 1.21511 0.97803 0.99917 0.95194 1.21275 0.88035 1.02590 0.99182 0.88623 1.21063 0.91183 0.75862 0.79874 1.90588 1.71789 1.48426 1.37531 1.49794 1.09887 1.54788 1.22322 1.23880 1.01297 0.93274 0.84468 1.19797 0.91601 0.82407 0.88542 1.86034 1.91588 1.20697 1.41728 1.21684 1.24063 1.10379 1.02934 0.90805 1.25756 0.94646 0.94626 1.01620 1.69333 1.32734 1.13746 1.40014 0.85309 0.78485 0.78059 0.78596 1.19135 1.20798 1.20025 1.23343 0.83754 0.97333 0.97606 1.21337 0.96308 0.99826 0.95098 1.21123 0.92549 0.97192 0.98883 0.89876 1.22015 1.01914 0.95611 1.01560 0.91980 0.92100 0.92159 0.91126 0.90364 0.91865 0.92149 0.92001 0.88861 0.75466 0.91298 0.88045 0.93234 0.92441 0.93025 0.92867 0.93281 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 2 C -0.09 -1.56 2.50 -10.79 -0.03 -1.58 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -2.16 4.93 30.59 0.15 -2.01 16 5 C -0.11 -2.82 5.09 30.59 0.16 -2.67 16 6 C -0.09 -2.83 2.13 -11.54 -0.02 -2.85 16 7 H 0.10 3.01 6.43 -2.39 -0.02 2.99 16 8 C 0.53 21.97 7.40 87.66 0.65 22.62 16 9 O -0.60 -28.78 16.76 -3.03 -0.05 -28.83 16 10 N -0.64 -27.24 3.64 -859.24 -3.13 -30.36 16 11 C 0.09 3.95 6.14 83.09 0.51 4.46 16 12 C 0.22 10.52 1.57 -11.29 -0.02 10.50 16 13 O -0.59 -31.03 13.53 -148.98 -2.02 -33.05 16 14 C -0.55 -27.37 8.69 25.60 0.22 -27.15 16 15 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 16 C 0.03 1.65 5.40 84.65 0.46 2.10 16 17 N -0.92 -45.69 11.01 21.45 0.24 -45.45 16 18 Si 0.97 38.72 29.54 68.60 2.03 40.75 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 C 0.10 4.60 8.04 83.19 0.67 5.27 16 23 C -0.09 -2.45 4.02 30.60 0.12 -2.33 16 24 C -0.08 -1.61 2.72 -10.79 -0.03 -1.64 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 C -0.15 -3.00 8.15 71.98 0.59 -2.41 16 27 H 0.06 0.83 6.42 -2.39 -0.02 0.82 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.41 6.43 -2.39 -0.02 1.39 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.79 6.35 -2.39 -0.02 1.78 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 3.66 8.05 -2.39 -0.02 3.64 16 36 H 0.39 20.70 6.33 -74.05 -0.47 20.23 16 37 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 38 H 0.10 4.12 8.10 -2.39 -0.02 4.10 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 42 H 0.05 1.13 4.81 -2.39 -0.01 1.12 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.18 6.42 -2.39 -0.02 1.16 16 Total: -1.00 -58.65 336.34 1.65 -57.01 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.52 Total: 39.01 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 4.06 Total: 0.93 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -2.89 Total: -75.82 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -2.07 Total: -61.88 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -58.65 1.65 -57.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.264 kcal (2) G-P(sol) polarization free energy of solvation -58.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds