Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.52996 * 109.47346 * 240.00254 * 2 1 3 5 5 C 1.53002 * 109.47343 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00063 * 5 4 2 7 7 H 1.09001 * 109.47375 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47084 * 59.99834 * 6 5 4 9 9 O 1.21282 * 120.00082 * 240.00437 * 8 6 5 10 10 N 1.34776 * 119.99978 * 59.99934 * 8 6 5 11 11 C 1.47068 * 136.05858 * 359.63449 * 10 8 6 12 12 C 1.53756 * 87.88860 * 152.95701 * 11 10 8 13 13 O 1.42895 * 114.39427 * 272.67581 * 12 11 10 14 14 C 1.50701 * 114.26252 * 139.79198 * 12 11 10 15 15 H 1.08006 * 119.99929 * 266.47209 * 14 12 11 16 16 C 1.37876 * 120.00403 * 86.47701 * 14 12 11 17 17 N 1.31512 * 120.00463 * 179.97438 * 16 14 12 18 18 Si 1.86807 * 119.99664 * 359.97438 * 16 14 12 19 19 H 1.48495 * 109.47032 * 89.99802 * 18 16 14 20 20 H 1.48490 * 109.46896 * 210.00021 * 18 16 14 21 21 H 1.48498 * 109.46813 * 329.99852 * 18 16 14 22 22 C 1.47070 * 136.05611 * 179.97438 * 10 8 6 23 23 C 1.53006 * 109.46974 * 300.00168 * 6 5 4 24 24 C 1.52997 * 109.47415 * 120.00118 * 2 1 3 25 25 H 1.09000 * 109.47140 * 59.99976 * 24 2 1 26 26 C 1.53006 * 109.47164 * 300.00027 * 24 2 1 27 27 H 1.09002 * 109.47070 * 299.99829 * 1 2 3 28 28 H 1.08992 * 109.46974 * 60.00064 * 1 2 3 29 29 H 1.08996 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47368 * 299.99812 * 4 2 1 31 31 H 1.09004 * 109.47108 * 59.99711 * 4 2 1 32 32 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47312 * 299.99943 * 5 4 2 34 34 H 1.08995 * 113.46708 * 267.69246 * 11 10 8 35 35 H 1.08997 * 113.46407 * 38.12934 * 11 10 8 36 36 H 0.96706 * 113.99890 * 273.58129 * 13 12 11 37 37 H 0.96994 * 120.00367 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.47206 * 321.87465 * 22 10 8 39 39 H 1.08998 * 113.46349 * 92.25247 * 22 10 8 40 40 H 1.09000 * 109.46866 * 299.99774 * 23 6 5 41 41 H 1.09001 * 109.46611 * 179.97438 * 23 6 5 42 42 H 1.09001 * 109.47002 * 59.99738 * 26 24 2 43 43 H 1.08993 * 109.46955 * 180.02562 * 26 24 2 44 44 H 1.09000 * 109.47050 * 300.00004 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2495 6 6 4.0806 -1.4415 -0.0004 7 1 5.1706 -1.4416 -0.0008 8 6 3.5787 -2.8625 -0.0001 9 8 2.8817 -3.2594 0.9096 10 7 3.9044 -3.6924 -1.0109 11 6 4.6897 -3.5942 -2.2505 12 6 4.9505 -5.1053 -2.1377 13 8 6.0890 -5.4502 -1.3460 14 6 4.8920 -5.8434 -3.4503 15 1 3.9694 -6.3057 -3.7692 16 6 6.0161 -5.9289 -4.2440 17 7 5.9652 -6.5735 -5.3892 18 14 7.6117 -5.1289 -3.6927 19 1 8.4034 -6.1007 -2.8966 20 1 8.3935 -4.7115 -4.8841 21 1 7.3062 -3.9385 -2.8591 22 6 3.6258 -5.0929 -1.3628 23 6 3.5705 -0.7203 1.2489 24 6 2.0401 -0.7212 1.2492 25 1 1.6768 -1.7489 1.2492 26 6 1.5301 0.0000 2.4985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.6768 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.9334 -1.2348 -2.1393 33 1 3.9331 0.3072 -1.2497 34 1 4.0940 -3.3204 -3.1212 35 1 5.5896 -2.9880 -2.1472 36 1 6.9221 -5.4572 -1.8370 37 1 6.7561 -6.6338 -5.9474 38 1 3.6194 -5.7635 -0.5034 39 1 2.7488 -5.2145 -1.9985 40 1 3.9335 0.3075 1.2487 41 1 3.9339 -1.2343 2.1389 42 1 0.4401 0.0000 2.4985 43 1 1.8939 -0.5136 3.3884 44 1 1.8934 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331994020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = -57.688855 kcal Electronic energy + Delta-G solvation = -23754.360169 eV Core-core repulsion = 20479.617294 eV Total energy + Delta-G solvation = -3274.742875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50910 -38.94720 -36.96520 -34.60853 -33.21519 -32.57382 -31.89978 -29.01199 -27.41332 -26.15432 -25.27484 -25.01107 -22.08725 -21.70355 -20.11821 -19.77084 -18.25980 -17.36684 -16.42245 -16.28622 -15.58637 -15.19966 -14.57345 -14.47701 -14.12612 -13.93122 -13.72204 -13.65460 -13.17958 -12.92721 -12.58542 -12.45490 -12.26702 -11.98690 -11.86652 -11.77760 -11.72780 -11.51818 -11.31398 -11.17756 -10.95355 -10.80497 -10.58745 -10.34517 -10.14099 -9.90462 -9.89179 -9.58319 -9.20331 -8.95963 -8.63331 -8.00645 -6.45389 -4.51306 2.96620 2.99484 3.11611 3.12415 3.45363 3.99607 4.59105 4.67790 4.71771 4.75740 4.94347 5.04718 5.09411 5.22888 5.36807 5.43106 5.51258 5.55337 5.56106 5.65860 5.73650 5.80979 5.81239 5.90226 5.94883 6.04224 6.04822 6.06536 6.10758 6.12395 6.24831 6.26769 6.33871 6.37664 6.41609 6.45253 6.50656 6.59204 6.76533 7.16694 7.98144 8.37911 8.48838 8.58553 8.69281 9.12227 10.66817 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.004703 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.234319 B = 5951.984676 C = 6046.462087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.104 4.104 7 H 0.090 0.910 8 C 0.545 3.455 9 O -0.554 6.554 10 N -0.635 5.635 11 C 0.063 3.937 12 C 0.195 3.805 13 O -0.550 6.550 14 C -0.534 4.534 15 H 0.092 0.908 16 C 0.081 3.919 17 N -0.875 5.875 18 Si 0.859 3.141 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.258 1.258 22 C 0.121 3.879 23 C -0.089 4.089 24 C -0.102 4.102 25 H 0.102 0.898 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.351 0.649 37 H 0.271 0.729 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 13.946 7.640 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.125 4.125 7 H 0.108 0.892 8 C 0.335 3.665 9 O -0.434 6.434 10 N -0.369 5.369 11 C -0.061 4.061 12 C 0.154 3.846 13 O -0.361 6.361 14 C -0.571 4.571 15 H 0.110 0.890 16 C -0.125 4.125 17 N -0.511 5.511 18 Si 0.688 3.312 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.183 1.183 22 C -0.002 4.002 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.120 0.880 26 C -0.201 4.201 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.203 0.797 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.263 13.778 8.572 17.059 hybrid contribution 1.468 0.465 -0.431 1.599 sum -3.795 14.242 8.141 16.838 Atomic orbital electron populations 1.21871 0.95606 1.01840 1.01162 1.21152 0.95276 0.98985 0.94892 0.91768 1.21610 0.95037 1.01164 0.97555 1.21548 0.96241 1.00411 0.96728 1.21276 1.01337 0.92287 0.97592 0.89194 1.19978 0.79587 0.86164 0.80748 1.90565 1.39490 1.77016 1.36355 1.49691 1.51722 1.13958 1.21480 1.24458 0.94299 1.01894 0.85410 1.20302 0.84083 0.89943 0.90314 1.86476 1.17044 1.92104 1.40504 1.21157 0.99934 1.35429 1.00606 0.88972 1.24998 0.98637 0.94147 0.94702 1.69845 1.30197 1.39852 1.11198 0.87320 0.84476 0.80762 0.78650 1.19271 1.20995 1.18297 1.23111 0.98014 0.81127 0.97914 1.21355 0.95990 0.99051 0.96301 1.21457 0.94855 1.02100 0.93564 0.87988 1.21840 1.00753 0.99693 0.97810 0.92590 0.93117 0.92715 0.91843 0.91905 0.91064 0.91215 0.88900 0.91914 0.79653 0.91840 0.91153 0.89000 0.91911 0.91548 0.92747 0.92964 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 2 C -0.08 -0.99 2.25 -90.62 -0.20 -1.19 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -1.48 4.98 -26.73 -0.13 -1.61 16 5 C -0.11 -1.43 5.34 -26.73 -0.14 -1.58 16 6 C -0.10 -1.52 2.89 -91.77 -0.27 -1.79 16 7 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 8 C 0.55 10.17 5.89 -10.98 -0.06 10.10 16 9 O -0.55 -11.65 14.43 5.56 0.08 -11.57 16 10 N -0.64 -12.42 3.64 -185.04 -0.67 -13.09 16 11 C 0.06 1.23 5.58 -8.37 -0.05 1.18 16 12 C 0.19 4.38 1.10 -91.13 -0.10 4.28 16 13 O -0.55 -12.92 13.33 -35.23 -0.47 -13.39 16 14 C -0.53 -13.57 9.28 -34.44 -0.32 -13.89 16 15 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 16 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 17 N -0.88 -24.18 13.96 55.43 0.77 -23.40 16 18 Si 0.86 18.68 24.42 -169.99 -4.15 14.52 16 19 H -0.27 -5.67 7.06 56.52 0.40 -5.27 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.26 -5.25 5.50 56.52 0.31 -4.94 16 22 C 0.12 2.50 8.02 -8.51 -0.07 2.43 16 23 C -0.09 -1.17 4.37 -26.71 -0.12 -1.29 16 24 C -0.10 -1.33 1.95 -90.60 -0.18 -1.51 16 25 H 0.10 1.68 5.51 -51.93 -0.29 1.39 16 26 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 27 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.96 7.22 -51.93 -0.37 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.96 6.32 -51.93 -0.33 0.63 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.71 8.06 -51.93 -0.42 1.29 16 35 H 0.06 1.17 7.15 -51.93 -0.37 0.80 16 36 H 0.35 7.86 3.16 45.56 0.14 8.00 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -28.42 328.52 -7.59 -36.01 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -7.02 Total: 11.36 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.08 Total: -5.38 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.10 Total: -36.49 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.39 Total: -24.97 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.15 Total: 14.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.42 -7.59 -36.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.679 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds