Wall clock time and date at job start Tue Mar 31 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.48969 * 2 1 4 4 C 1.53099 * 109.47831 * 120.02455 * 2 1 3 5 5 C 1.53176 * 109.15927 * 177.59112 * 4 2 1 6 6 H 1.09004 * 109.53924 * 62.98046 * 5 4 2 7 7 C 1.50699 * 109.54137 * 183.14975 * 5 4 2 8 8 O 1.21282 * 119.99851 * 37.62265 * 7 5 4 9 9 N 1.34780 * 120.00482 * 217.62127 * 7 5 4 10 10 C 1.46498 * 120.00278 * 175.29091 * 9 7 5 11 11 C 1.50700 * 109.46813 * 89.99847 * 10 9 7 12 12 H 1.07997 * 120.00160 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99840 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99792 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99869 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46818 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47130 * 299.99903 * 15 13 11 18 18 H 1.48499 * 109.47480 * 60.00287 * 15 13 11 19 19 C 1.46505 * 119.99488 * 355.29195 * 9 7 5 20 20 C 1.52998 * 109.47196 * 274.24562 * 19 9 7 21 21 C 1.52995 * 117.50107 * 244.47980 * 20 19 9 22 22 C 1.52997 * 117.49950 * 175.81472 * 20 19 9 23 23 C 1.53174 * 109.03884 * 303.01857 * 5 4 2 24 24 C 1.53090 * 109.16244 * 56.98339 * 23 5 4 25 25 O 1.42897 * 109.48183 * 239.96525 * 2 1 3 26 26 H 1.08997 * 109.47421 * 299.97091 * 1 2 3 27 27 H 1.09003 * 109.47063 * 59.97981 * 1 2 3 28 28 H 1.09009 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.52308 * 57.68871 * 4 2 1 30 30 H 1.09001 * 109.52051 * 297.49711 * 4 2 1 31 31 H 1.09000 * 109.47224 * 330.00312 * 10 9 7 32 32 H 1.08997 * 109.46867 * 209.99885 * 10 9 7 33 33 H 0.96996 * 120.00023 * 359.97438 * 14 13 11 34 34 H 1.08999 * 109.47019 * 34.24838 * 19 9 7 35 35 H 1.09001 * 109.46671 * 154.24961 * 19 9 7 36 36 H 1.09004 * 115.54963 * 30.14357 * 20 19 9 37 37 H 1.08998 * 117.49659 * 359.97438 * 21 20 19 38 38 H 1.08995 * 117.50227 * 145.01901 * 21 20 19 39 39 H 1.08996 * 117.49675 * 214.97973 * 22 20 19 40 40 H 1.09001 * 117.49856 * 0.02562 * 22 20 19 41 41 H 1.09005 * 109.51996 * 176.88511 * 23 5 4 42 42 H 1.08997 * 109.52505 * 297.07713 * 23 5 4 43 43 H 1.08996 * 109.48005 * 182.40363 * 24 23 5 44 44 H 1.08999 * 109.48991 * 62.38047 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5710 -0.7708 1.2122 6 1 3.9689 0.2436 1.2425 7 6 4.0799 -1.5474 2.3993 8 8 3.4767 -2.5251 2.7880 9 7 5.2053 -1.1555 3.0289 10 6 5.6438 -1.8470 4.2436 11 6 6.5516 -2.9907 3.8706 12 1 6.7794 -3.1829 2.8326 13 6 7.0921 -3.7911 4.8547 14 7 6.8150 -3.5567 6.1188 15 14 8.2178 -5.2082 4.3923 16 1 8.6622 -5.9093 5.6237 17 1 7.4836 -6.1591 3.5195 18 1 9.4021 -4.6832 3.6663 19 6 5.9900 -0.0378 2.4984 20 6 6.9601 -0.5553 1.4345 21 6 8.4573 -0.4369 1.7261 22 6 7.8049 0.4778 0.6864 23 6 4.0176 -1.4601 -0.0807 24 6 3.4307 -0.7094 -1.2789 25 8 2.0066 -0.6743 -1.1663 26 1 -0.3634 0.5134 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6443 -1.7374 1.2711 30 1 1.7148 -0.1842 2.1399 31 1 4.7744 -2.2322 4.7764 32 1 6.1830 -1.1493 4.8844 33 1 6.2308 -2.8206 6.3589 34 1 5.3200 0.6972 2.0525 35 1 6.5528 0.4273 3.3078 36 1 6.6236 -1.4294 0.8768 37 1 8.7512 0.0101 2.6757 38 1 9.1059 -1.2327 1.3599 39 1 8.0246 0.2833 -0.3634 40 1 7.6699 1.5262 0.9524 41 1 5.1059 -1.4497 -0.1419 42 1 3.6613 -2.4902 -0.0862 43 1 3.7101 -1.2204 -2.2003 44 1 3.8193 0.3088 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332133576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:32 Heat of formation + Delta-G solvation = -70.993311 kcal Electronic energy + Delta-G solvation = -23525.183108 eV Core-core repulsion = 20249.863308 eV Total energy + Delta-G solvation = -3275.319800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17301 -38.53583 -37.09404 -34.55430 -33.57376 -32.84667 -32.52552 -28.13397 -27.55346 -26.12273 -24.58703 -22.96021 -22.24240 -22.11891 -20.70145 -20.44842 -18.33381 -16.98890 -16.69361 -16.34992 -16.13635 -15.34127 -14.84657 -14.70428 -14.48908 -13.94829 -13.72459 -13.70412 -13.07539 -12.95577 -12.58084 -12.48336 -12.37033 -12.11069 -11.91408 -11.46942 -11.31213 -11.24024 -11.16873 -11.12556 -10.94323 -10.65190 -10.61781 -10.38864 -10.13301 -10.06333 -9.69270 -9.57452 -9.09273 -8.82011 -8.35521 -7.65833 -6.34727 -4.05321 3.27539 3.43008 3.47687 3.64273 3.69877 3.76959 4.09497 4.55325 4.72611 4.74614 4.81361 4.91384 5.00262 5.08649 5.13331 5.21544 5.26708 5.33364 5.38510 5.42674 5.52330 5.58205 5.59884 5.68167 5.76217 5.80257 5.82310 5.89565 5.96263 5.98814 6.09826 6.19443 6.20628 6.34579 6.38230 6.54237 6.81226 7.11078 7.20010 7.40490 8.07143 8.27870 8.47436 8.80998 9.01232 9.63037 11.02477 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.005407 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.657001 B = 5177.439160 C = 5901.446580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.056 0.944 4 C -0.134 4.134 5 C -0.110 4.110 6 H 0.087 0.913 7 C 0.512 3.488 8 O -0.536 6.536 9 N -0.591 5.591 10 C 0.237 3.763 11 C -0.593 4.593 12 H 0.051 0.949 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 1.068 2.932 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.288 1.288 19 C 0.145 3.855 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.189 4.189 23 C -0.145 4.145 24 C 0.067 3.933 25 O -0.381 6.381 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 11.894 -13.559 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.074 0.926 4 C -0.172 4.172 5 C -0.132 4.132 6 H 0.105 0.895 7 C 0.298 3.702 8 O -0.413 6.413 9 N -0.322 5.322 10 C 0.118 3.882 11 C -0.632 4.632 12 H 0.070 0.930 13 C -0.185 4.185 14 N -0.549 5.549 15 Si 0.897 3.103 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.215 1.215 19 C 0.021 3.979 20 C -0.177 4.177 21 C -0.199 4.199 22 C -0.226 4.226 23 C -0.183 4.183 24 C -0.009 4.009 25 O -0.301 6.301 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.061 10.040 -12.800 16.768 hybrid contribution -0.412 1.328 -0.415 1.451 sum -4.474 11.368 -13.215 17.997 Atomic orbital electron populations 1.21756 0.93083 1.03115 1.02165 1.22085 0.95035 0.94693 0.85101 0.92626 1.22111 0.93824 1.03229 0.98017 1.21404 0.96878 1.00179 0.94700 0.89531 1.20226 0.81037 0.84940 0.83962 1.90668 1.58175 1.26520 1.65969 1.48047 1.22953 1.32943 1.28207 1.19340 0.95342 0.92172 0.81372 1.22174 1.30739 1.14958 0.95311 0.93027 1.25744 0.98645 1.00834 0.93307 1.70808 1.35623 1.31053 1.17439 0.83548 0.75635 0.75650 0.75499 1.20743 1.21511 1.21508 1.21041 0.92889 0.88462 0.95551 1.22804 0.93465 1.00534 1.00890 1.22894 0.95573 1.01725 0.99722 1.22981 1.05955 0.96254 0.97440 1.22174 1.01794 1.01048 0.93252 1.22531 0.80922 0.99367 0.98116 1.87907 1.21056 1.78116 1.42971 0.91101 0.91993 0.91644 0.89639 0.90940 0.95169 0.96312 0.92369 0.91280 0.90589 0.87749 0.88784 0.89107 0.89253 0.89160 0.90104 0.90273 0.88744 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.56 37.16 0.36 -1.07 16 2 C 0.09 1.04 3.26 -26.68 -0.09 0.95 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -1.89 4.45 -26.59 -0.12 -2.01 16 5 C -0.11 -1.67 2.14 -91.59 -0.20 -1.87 16 6 H 0.09 1.13 5.69 -51.93 -0.30 0.83 16 7 C 0.51 10.63 6.61 -10.98 -0.07 10.56 16 8 O -0.54 -13.71 15.91 5.56 0.09 -13.62 16 9 N -0.59 -12.37 2.46 -175.06 -0.43 -12.80 16 10 C 0.24 6.14 4.48 -5.19 -0.02 6.11 16 11 C -0.59 -16.78 9.39 -34.44 -0.32 -17.10 16 12 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 13 C 0.02 0.53 5.46 -17.81 -0.10 0.44 16 14 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 15 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.14 2.33 5.55 -4.04 -0.02 2.31 16 20 C -0.16 -2.41 5.59 -90.62 -0.51 -2.92 16 21 C -0.16 -2.41 10.18 -26.69 -0.27 -2.68 16 22 C -0.19 -2.24 10.25 -26.69 -0.27 -2.51 16 23 C -0.14 -2.02 5.40 -26.60 -0.14 -2.17 16 24 C 0.07 0.77 6.84 37.20 0.25 1.02 16 25 O -0.38 -5.00 10.41 -35.23 -0.37 -5.37 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 1.41 7.77 -51.93 -0.40 1.00 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.88 7.36 -51.93 -0.38 0.50 16 32 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 33 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 34 H 0.07 0.90 5.81 -51.93 -0.30 0.60 16 35 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 36 H 0.10 1.76 6.23 -51.93 -0.32 1.44 16 37 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 1.10 5.72 -51.93 -0.30 0.80 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -33.57 349.33 -8.66 -42.24 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.37 Total: 1.62 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.53 Total: -10.94 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.33 Total: -39.95 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.28 Total: -18.99 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.57 -8.66 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332133576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.756 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds