Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.48269 * 2 1 4 4 C 1.53090 * 109.48988 * 120.03596 * 2 1 3 5 5 C 1.53178 * 109.16240 * 177.59415 * 4 2 1 6 6 H 1.08994 * 109.54700 * 183.14795 * 5 4 2 7 7 C 1.50703 * 109.54252 * 62.97015 * 5 4 2 8 8 O 1.21281 * 120.00165 * 331.40312 * 7 5 4 9 9 N 1.34779 * 119.99937 * 151.39765 * 7 5 4 10 10 C 1.46504 * 119.99892 * 4.41964 * 9 7 5 11 11 C 1.50700 * 109.47112 * 85.33128 * 10 9 7 12 12 H 1.08004 * 119.99586 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00436 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00468 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99466 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46800 * 90.00419 * 15 13 11 17 17 H 1.48500 * 109.47009 * 210.00053 * 15 13 11 18 18 H 1.48494 * 109.47351 * 330.00145 * 15 13 11 19 19 C 1.46491 * 120.00157 * 184.41911 * 9 7 5 20 20 C 1.53005 * 109.47427 * 84.86230 * 19 9 7 21 21 C 1.52994 * 117.50316 * 244.67174 * 20 19 9 22 22 C 1.52996 * 117.50039 * 176.00746 * 20 19 9 23 23 C 1.53182 * 109.04626 * 303.02474 * 5 4 2 24 24 C 1.53093 * 109.16321 * 56.96014 * 23 5 4 25 25 O 1.42899 * 109.42594 * 302.41240 * 24 23 5 26 26 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46572 * 300.01674 * 1 2 3 28 28 H 1.08997 * 109.47224 * 60.01909 * 1 2 3 29 29 H 1.08996 * 109.51967 * 297.49509 * 4 2 1 30 30 H 1.08998 * 109.52438 * 57.68672 * 4 2 1 31 31 H 1.09000 * 109.47008 * 205.33160 * 10 9 7 32 32 H 1.08999 * 109.47147 * 325.33304 * 10 9 7 33 33 H 0.96995 * 119.99905 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47596 * 204.86232 * 19 9 7 35 35 H 1.09002 * 109.47389 * 324.86527 * 19 9 7 36 36 H 1.09004 * 115.54664 * 30.34115 * 20 19 9 37 37 H 1.09004 * 117.49679 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50240 * 145.01748 * 21 20 19 39 39 H 1.09002 * 117.50116 * 214.97971 * 22 20 19 40 40 H 1.08995 * 117.50124 * 359.97438 * 22 20 19 41 41 H 1.09000 * 109.50925 * 297.06589 * 23 5 4 42 42 H 1.08997 * 109.53273 * 176.87256 * 23 5 4 43 43 H 1.09000 * 109.47778 * 182.42011 * 24 23 5 44 44 H 1.09005 * 109.47679 * 62.39673 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0408 -0.7224 1.2494 5 6 3.5714 -0.7708 1.2118 6 1 3.9397 -1.3325 2.0701 7 6 4.1213 0.6317 1.2536 8 8 3.4725 1.5512 0.8013 9 7 5.3340 0.8642 1.7937 10 6 6.1588 -0.2565 2.2519 11 6 6.9486 -0.8062 1.0921 12 1 6.8466 -0.3645 0.1118 13 6 7.8013 -1.8728 1.2824 14 7 8.4909 -2.3522 0.2703 15 14 7.9781 -2.6361 2.9782 16 1 6.9809 -3.7249 3.1373 17 1 9.3466 -3.1922 3.1304 18 1 7.7474 -1.5982 4.0147 19 6 5.8274 2.2375 1.9225 20 6 5.2920 2.8525 3.2172 21 6 4.3380 4.0421 3.0926 22 6 5.7719 4.2585 3.5827 23 6 4.0181 -1.4596 -0.0815 24 6 3.4306 -0.7090 -1.2795 25 8 2.0065 -0.6740 -1.1666 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5141 0.8899 28 1 -0.3633 0.5135 -0.8901 29 1 1.7152 -0.1845 2.1397 30 1 1.6447 -1.7376 1.2707 31 1 6.8435 0.0891 3.0264 32 1 5.5166 -1.0384 2.6573 33 1 9.0910 -3.1023 0.4043 34 1 6.9171 2.2314 1.9468 35 1 5.4862 2.8275 1.0719 36 1 5.1187 2.1517 4.0340 37 1 4.0921 4.3869 2.0882 38 1 3.5372 4.1242 3.8275 39 1 5.9139 4.4830 4.6398 40 1 6.4694 4.7453 2.9010 41 1 3.6620 -2.4898 -0.0869 42 1 5.1063 -1.4490 -0.1429 43 1 3.7099 -1.2199 -2.2009 44 1 3.8190 0.3094 -1.2963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332133579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = -62.174055 kcal Electronic energy + Delta-G solvation = -23934.228556 eV Core-core repulsion = 20659.291188 eV Total energy + Delta-G solvation = -3274.937368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23802 -38.13023 -36.78501 -34.94019 -33.07840 -32.51743 -32.26344 -28.52470 -27.57226 -26.59157 -23.89274 -22.63604 -22.19278 -22.01273 -20.94548 -20.07741 -17.98779 -17.11615 -16.56023 -15.85901 -15.52655 -15.49313 -14.85279 -14.57579 -14.18679 -14.08103 -13.76078 -13.37502 -13.03610 -12.64977 -12.34163 -12.18073 -12.05017 -12.03521 -11.81383 -11.67299 -11.39763 -11.35140 -11.26126 -10.93962 -10.78183 -10.51761 -10.39821 -10.21187 -10.19916 -9.95284 -9.69783 -9.60894 -9.13115 -8.77316 -8.38896 -7.81516 -6.28259 -4.29210 3.12708 3.20789 3.22860 3.29826 3.69522 4.07568 4.20871 4.29531 4.96520 5.01697 5.07006 5.14151 5.18020 5.24909 5.29737 5.45484 5.59549 5.66545 5.75863 5.76471 5.80798 5.92130 5.95370 6.04050 6.04462 6.06774 6.10866 6.12098 6.24832 6.28513 6.33122 6.42109 6.45319 6.53209 6.58514 6.67045 6.73102 6.96910 7.31814 7.37383 7.80104 8.09718 8.34218 8.74528 8.91548 9.30908 10.83577 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.008195 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.938718 B = 3415.793142 C = 5180.451172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 H 0.105 0.895 4 C -0.128 4.128 5 C -0.104 4.104 6 H 0.093 0.907 7 C 0.528 3.472 8 O -0.562 6.562 9 N -0.588 5.588 10 C 0.206 3.794 11 C -0.540 4.540 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.868 3.132 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.150 3.850 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.181 4.181 23 C -0.153 4.153 24 C 0.065 3.935 25 O -0.390 6.390 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.859 5.588 4.726 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.122 0.878 4 C -0.166 4.166 5 C -0.125 4.125 6 H 0.111 0.889 7 C 0.317 3.683 8 O -0.443 6.443 9 N -0.317 5.317 10 C 0.085 3.915 11 C -0.578 4.578 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.695 3.305 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.189 1.189 19 C 0.026 3.974 20 C -0.182 4.182 21 C -0.208 4.208 22 C -0.219 4.219 23 C -0.191 4.191 24 C -0.012 4.012 25 O -0.309 6.309 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.144 5.825 4.312 11.667 hybrid contribution 0.603 -0.656 1.254 1.538 sum -8.541 5.169 5.565 11.430 Atomic orbital electron populations 1.21753 0.94584 1.01826 1.01672 1.22631 0.93624 0.98687 0.84327 0.87770 1.22038 0.94197 1.01176 0.99198 1.21273 0.95556 0.94396 1.01271 0.88903 1.20440 0.80871 0.90499 0.76445 1.90439 1.59046 1.46419 1.48355 1.47914 1.16840 1.07081 1.59844 1.19881 0.90568 0.84690 0.96390 1.21318 1.24358 1.16004 0.96082 0.90102 1.24852 0.94877 0.96267 0.96536 1.69878 1.26679 1.25199 1.30643 0.86965 0.78167 0.80249 0.85119 1.19817 1.20868 1.18927 1.20862 0.98778 0.82917 0.94798 1.22786 1.04098 0.90878 1.00396 1.22949 0.92585 1.02811 1.02478 1.22925 0.97936 0.99580 1.01422 1.22334 1.05574 0.98735 0.92461 1.22523 0.80550 0.99924 0.98198 1.87783 1.21444 1.78352 1.43347 0.92725 0.91754 0.92423 0.91611 0.91309 0.94748 0.95285 0.92272 0.89904 0.90730 0.88157 0.88615 0.89564 0.89203 0.88830 0.91221 0.86200 0.89447 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 37.16 0.36 -1.55 16 2 C 0.06 1.08 2.96 -26.68 -0.08 1.00 16 3 H 0.11 1.97 5.12 -51.93 -0.27 1.70 16 4 C -0.13 -2.05 4.79 -26.59 -0.13 -2.18 16 5 C -0.10 -1.88 2.39 -91.58 -0.22 -2.10 16 6 H 0.09 1.66 6.04 -51.93 -0.31 1.34 16 7 C 0.53 10.32 5.91 -10.98 -0.06 10.26 16 8 O -0.56 -11.53 12.27 5.56 0.07 -11.46 16 9 N -0.59 -11.49 2.48 -175.06 -0.43 -11.93 16 10 C 0.21 4.34 4.02 -5.19 -0.02 4.32 16 11 C -0.54 -13.35 7.70 -34.44 -0.27 -13.61 16 12 H 0.08 2.24 7.63 -52.48 -0.40 1.84 16 13 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -24.68 13.96 55.43 0.77 -23.90 16 15 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 19 C 0.15 2.61 5.65 -4.04 -0.02 2.59 16 20 C -0.16 -2.44 5.97 -90.62 -0.54 -2.98 16 21 C -0.17 -2.33 10.18 -26.70 -0.27 -2.60 16 22 C -0.18 -2.25 10.25 -26.69 -0.27 -2.52 16 23 C -0.15 -2.89 5.62 -26.59 -0.15 -3.04 16 24 C 0.06 1.19 6.57 37.21 0.24 1.43 16 25 O -0.39 -7.14 10.41 -35.23 -0.37 -7.51 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.72 7.10 -51.93 -0.37 0.36 16 32 H 0.03 0.60 5.37 -51.93 -0.28 0.32 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.07 1.34 7.26 -51.93 -0.38 0.96 16 36 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.12 2.61 5.19 -51.93 -0.27 2.34 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.05 1.02 6.88 -51.93 -0.36 0.66 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -27.37 338.89 -8.34 -35.70 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.28 Total: 8.53 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.53 Total: -9.05 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.34 Total: -35.83 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.30 Total: -18.97 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.37 -8.34 -35.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332133579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.469 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds