Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 H 1.08998 * 109.48978 * 55.03038 * 3 2 1 5 5 C 1.53091 * 109.48128 * 175.06010 * 3 2 1 6 6 C 1.53180 * 109.16449 * 177.59403 * 5 3 2 7 7 H 1.09001 * 109.54312 * 62.97238 * 6 5 3 8 8 C 1.53005 * 109.54638 * 183.15330 * 6 5 3 9 9 C 1.50692 * 109.47338 * 185.00002 * 8 6 5 10 10 O 1.21294 * 120.00021 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00069 * 180.02562 * 9 8 6 12 12 C 1.37108 * 120.00140 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99993 * 131.46729 * 12 11 9 14 14 C 1.38952 * 119.99790 * 311.47179 * 12 11 9 15 15 N 1.31406 * 119.99828 * 166.84888 * 14 12 11 16 16 Si 1.86800 * 119.99812 * 346.84681 * 14 12 11 17 17 H 1.48500 * 109.47003 * 93.78237 * 16 14 12 18 18 H 1.48499 * 109.46767 * 213.77677 * 16 14 12 19 19 H 1.48497 * 109.47285 * 333.77534 * 16 14 12 20 20 C 1.46503 * 120.00087 * 359.97438 * 11 9 8 21 21 C 1.52997 * 117.49671 * 191.36031 * 20 11 9 22 22 C 1.52999 * 117.49880 * 122.70099 * 20 11 9 23 23 C 1.53181 * 109.03548 * 303.01737 * 6 5 3 24 24 C 1.53097 * 109.16065 * 56.97921 * 23 6 5 25 25 O 1.42900 * 109.48223 * 295.00309 * 3 2 1 26 26 H 1.09000 * 109.46809 * 299.99459 * 1 2 3 27 27 H 1.08993 * 109.47504 * 60.00181 * 1 2 3 28 28 H 1.08999 * 109.46527 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47419 * 240.00176 * 2 1 3 30 30 H 1.09001 * 109.47774 * 120.00362 * 2 1 3 31 31 H 1.09000 * 109.52452 * 297.49702 * 5 3 2 32 32 H 1.08994 * 109.52847 * 57.68516 * 5 3 2 33 33 H 1.09002 * 109.46783 * 304.99753 * 8 6 5 34 34 H 1.08992 * 109.46879 * 64.99537 * 8 6 5 35 35 H 0.97000 * 119.99998 * 180.02562 * 15 14 12 36 36 H 1.08995 * 115.54616 * 337.02995 * 20 11 9 37 37 H 1.09001 * 117.50381 * 359.97438 * 21 20 11 38 38 H 1.09003 * 117.49711 * 145.02600 * 21 20 11 39 39 H 1.08998 * 117.49547 * 214.98387 * 22 20 11 40 40 H 1.09006 * 117.49993 * 359.97438 * 22 20 11 41 41 H 1.09004 * 109.52274 * 297.08137 * 23 6 5 42 42 H 1.08998 * 109.52657 * 176.88657 * 23 6 5 43 43 H 1.08999 * 109.47634 * 182.40871 * 24 23 6 44 44 H 1.08998 * 109.47947 * 62.37471 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9816 0.8420 5 6 3.5658 1.4446 0.1243 6 6 4.0734 2.8885 0.0631 7 1 3.6812 3.4491 0.9116 8 6 5.6028 2.8959 0.1075 9 6 6.0966 4.3181 0.1711 10 8 5.3035 5.2358 0.1795 11 7 7.4197 4.5706 0.2175 12 6 7.8691 5.8647 0.2748 13 1 8.6110 6.1467 1.0073 14 6 7.3699 6.8133 -0.6094 15 7 7.5951 8.0906 -0.3986 16 14 6.3789 6.2726 -2.0977 17 1 4.9318 6.3004 -1.7655 18 1 6.6445 7.1950 -3.2307 19 1 6.7727 4.8927 -2.4799 20 6 8.3778 3.4623 0.2067 21 6 9.8380 3.7877 0.5272 22 6 9.4266 3.4460 -0.9071 23 6 3.5956 3.5311 -1.2428 24 6 2.0686 3.4484 -1.3143 25 8 1.6620 2.0816 -1.2209 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8935 -0.5139 0.8899 31 1 3.8545 0.9971 1.0754 32 1 3.9989 0.8712 -0.6953 33 1 5.9432 2.3533 0.9894 34 1 5.9945 2.4149 -0.7887 35 1 7.2463 8.7528 -1.0156 36 1 7.9897 2.5022 0.5468 37 1 10.0860 4.8264 0.7456 38 1 10.4108 3.0414 1.0777 39 1 9.7288 2.4750 -1.2995 40 1 9.4035 4.2596 -1.6321 41 1 4.0292 2.9998 -2.0901 42 1 3.9055 4.5757 -1.2695 43 1 1.7259 3.8657 -2.2611 44 1 1.6349 4.0137 -0.4895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = -62.817399 kcal Electronic energy + Delta-G solvation = -23480.888945 eV Core-core repulsion = 20205.923680 eV Total energy + Delta-G solvation = -3274.965266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82813 -38.80710 -36.52906 -34.38368 -33.94563 -32.83589 -31.48382 -29.72342 -28.74954 -25.22463 -23.83645 -23.12146 -21.89051 -21.49345 -20.94607 -19.99404 -18.91383 -16.92601 -16.39815 -16.16477 -15.80511 -15.44161 -14.72521 -14.63354 -14.27644 -13.86884 -13.71430 -13.52859 -13.29448 -13.06695 -12.78423 -12.53525 -12.29782 -11.82804 -11.65709 -11.55276 -11.27893 -11.10430 -11.07150 -10.94135 -10.80066 -10.54496 -10.34044 -10.23551 -10.09322 -10.06282 -9.93777 -9.68733 -9.30636 -8.64134 -8.37802 -7.40642 -6.20267 -4.04769 3.28054 3.42376 3.55737 3.74443 3.87891 4.28842 4.45780 4.63487 4.69630 4.89739 5.02359 5.04895 5.12174 5.17041 5.28761 5.35333 5.42536 5.45725 5.57371 5.59649 5.67440 5.70215 5.72088 5.79312 5.83062 5.83745 5.94638 5.96965 6.07007 6.08297 6.15161 6.18219 6.20863 6.34510 6.35217 6.65981 6.67657 6.72694 6.87188 7.39358 7.83915 8.03494 8.76413 8.92351 9.40254 9.81063 10.85518 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.005339 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.467720 B = 5243.156417 C = 6033.334297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.145 4.145 6 C -0.069 4.069 7 H 0.079 0.921 8 C -0.132 4.132 9 C 0.462 3.538 10 O -0.540 6.540 11 N -0.443 5.443 12 C -0.342 4.342 13 H 0.093 0.907 14 C 0.090 3.910 15 N -0.873 5.873 16 Si 0.906 3.094 17 H -0.254 1.254 18 H -0.308 1.308 19 H -0.277 1.277 20 C 0.063 3.937 21 C -0.176 4.176 22 C -0.197 4.197 23 C -0.162 4.162 24 C 0.065 3.935 25 O -0.383 6.383 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.272 0.728 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 -15.818 -0.024 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.183 4.183 6 C -0.088 4.088 7 H 0.097 0.903 8 C -0.172 4.172 9 C 0.252 3.748 10 O -0.422 6.422 11 N -0.164 5.164 12 C -0.468 4.468 13 H 0.111 0.889 14 C -0.118 4.118 15 N -0.508 5.508 16 Si 0.737 3.263 17 H -0.180 1.180 18 H -0.238 1.238 19 H -0.202 1.202 20 C -0.043 4.043 21 C -0.214 4.214 22 C -0.236 4.236 23 C -0.200 4.200 24 C -0.011 4.011 25 O -0.303 6.303 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.531 -15.234 -0.192 16.995 hybrid contribution 0.021 -0.004 -0.596 0.596 sum -7.510 -15.238 -0.788 17.006 Atomic orbital electron populations 1.21715 0.95491 1.01190 1.02275 1.21541 0.96493 0.94740 1.02491 1.22095 0.93667 0.93579 0.87358 0.92648 1.22303 0.96004 0.97530 1.02435 1.20884 0.94167 0.94763 0.98990 0.90309 1.21698 0.96099 0.96562 1.02860 1.20379 0.83112 0.90335 0.80950 1.90505 1.53670 1.46299 1.51742 1.43186 1.02583 1.05147 1.65445 1.18728 1.27687 0.81861 1.18534 0.88912 1.25355 0.94631 0.94513 0.97328 1.69700 1.44038 1.00459 1.36583 0.86445 0.82499 0.77664 0.79719 1.17981 1.23761 1.20217 1.21860 0.87053 0.92157 1.03181 1.23127 0.96824 1.03386 0.98060 1.23230 1.05329 1.02156 0.92838 1.22478 0.95743 1.04460 0.97275 1.22553 0.94592 0.82290 1.01681 1.87854 1.78711 1.25227 1.38459 0.93022 0.91959 0.93031 0.91262 0.90835 0.91133 0.91209 0.90002 0.90265 0.91859 0.87147 0.87318 0.89609 0.89677 0.88507 0.92110 0.88149 0.89279 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.81 37.16 0.36 -1.04 16 2 C -0.12 -1.15 5.64 -26.73 -0.15 -1.31 16 3 C 0.09 1.13 2.64 -26.69 -0.07 1.06 16 4 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.14 -1.83 4.71 -26.59 -0.13 -1.96 16 6 C -0.07 -1.11 1.92 -90.43 -0.17 -1.29 16 7 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 8 C -0.13 -2.26 3.69 -27.88 -0.10 -2.36 16 9 C 0.46 10.60 5.56 -10.99 -0.06 10.54 16 10 O -0.54 -14.25 10.13 5.55 0.06 -14.19 16 11 N -0.44 -10.45 2.43 -107.73 -0.26 -10.71 16 12 C -0.34 -9.50 8.48 -14.93 -0.13 -9.63 16 13 H 0.09 2.72 7.08 -52.49 -0.37 2.35 16 14 C 0.09 2.63 5.00 -17.47 -0.09 2.54 16 15 N -0.87 -26.62 13.96 55.50 0.77 -25.84 16 16 Si 0.91 23.86 24.35 -169.99 -4.14 19.72 16 17 H -0.25 -6.82 5.50 56.52 0.31 -6.51 16 18 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 C 0.06 1.18 6.05 -67.93 -0.41 0.77 16 21 C -0.18 -3.03 9.85 -26.70 -0.26 -3.29 16 22 C -0.20 -3.42 10.23 -26.69 -0.27 -3.69 16 23 C -0.16 -2.81 5.13 -26.59 -0.14 -2.95 16 24 C 0.07 0.98 6.84 37.21 0.25 1.24 16 25 O -0.38 -5.56 9.94 -35.23 -0.35 -5.91 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 34 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 35 H 0.27 7.83 8.31 -40.82 -0.34 7.49 16 36 H 0.11 1.69 6.73 -51.93 -0.35 1.34 16 37 H 0.11 2.15 6.58 -51.93 -0.34 1.81 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.10 2.12 4.62 -51.93 -0.24 1.88 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -32.07 336.69 -7.87 -39.94 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.66 Total: 3.30 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.36 Total: -11.38 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.51 Total: -36.55 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.29 Total: -20.11 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.14 Total: 19.72 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.07 -7.87 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.882 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds