Wall clock time and date at job start Tue Mar 31 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 H 1.08997 * 109.48391 * 304.97852 * 3 2 1 5 5 C 1.53091 * 109.48141 * 184.94272 * 3 2 1 6 6 C 1.53178 * 109.16512 * 182.40957 * 5 3 2 7 7 H 1.08998 * 109.61699 * 297.06770 * 6 5 3 8 8 C 1.53000 * 109.54214 * 176.84942 * 6 5 3 9 9 C 1.50698 * 109.46980 * 175.44538 * 8 6 5 10 10 O 1.21294 * 120.00446 * 359.97438 * 9 8 6 11 11 N 1.34778 * 120.00195 * 179.97438 * 9 8 6 12 12 C 1.37103 * 120.00189 * 180.02562 * 11 9 8 13 13 H 1.07993 * 120.00036 * 224.49323 * 12 11 9 14 14 C 1.38953 * 119.99760 * 44.48573 * 12 11 9 15 15 N 1.31411 * 120.00119 * 18.01397 * 14 12 11 16 16 Si 1.86800 * 119.99798 * 198.00403 * 14 12 11 17 17 H 1.48503 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47157 * 120.00312 * 16 14 12 19 19 H 1.48500 * 109.47505 * 240.00561 * 16 14 12 20 20 C 1.46493 * 120.00117 * 359.97438 * 11 9 8 21 21 C 1.52998 * 117.50391 * 183.27231 * 20 11 9 22 22 C 1.52994 * 117.50014 * 114.60952 * 20 11 9 23 23 C 1.53176 * 109.03674 * 56.98297 * 6 5 3 24 24 C 1.53096 * 109.16237 * 303.01786 * 23 6 5 25 25 O 1.42906 * 109.41422 * 57.61038 * 24 23 6 26 26 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46677 * 299.99799 * 1 2 3 28 28 H 1.08997 * 109.46875 * 59.99745 * 1 2 3 29 29 H 1.09001 * 109.47027 * 239.99827 * 2 1 3 30 30 H 1.08997 * 109.46875 * 120.00255 * 2 1 3 31 31 H 1.09002 * 109.52286 * 62.50370 * 5 3 2 32 32 H 1.09000 * 109.52600 * 302.31936 * 5 3 2 33 33 H 1.08996 * 109.47330 * 55.44539 * 8 6 5 34 34 H 1.08999 * 109.47323 * 295.44248 * 8 6 5 35 35 H 0.96994 * 119.99786 * 174.95982 * 15 14 12 36 36 H 1.09007 * 115.54747 * 328.94589 * 20 11 9 37 37 H 1.09007 * 117.49430 * 0.02562 * 21 20 11 38 38 H 1.08999 * 117.49633 * 145.01942 * 21 20 11 39 39 H 1.09001 * 117.50513 * 214.97986 * 22 20 11 40 40 H 1.09006 * 117.50086 * 0.02562 * 22 20 11 41 41 H 1.09000 * 109.52171 * 62.92144 * 23 6 5 42 42 H 1.08993 * 109.52231 * 183.05215 * 23 6 5 43 43 H 1.09001 * 109.48182 * 177.59112 * 24 23 6 44 44 H 1.09002 * 109.48272 * 297.61983 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5659 1.4446 -0.1244 6 6 4.0734 2.8885 -0.0631 7 1 3.6814 3.4505 -0.9107 8 6 5.6028 2.8957 -0.1076 9 6 6.0970 4.3184 -0.1601 10 8 5.3041 5.2363 -0.1622 11 7 7.4202 4.5709 -0.2047 12 6 7.8699 5.8652 -0.2519 13 1 8.6582 6.1383 -0.9377 14 6 7.3112 6.8256 0.5825 15 7 6.6261 6.4575 1.6417 16 14 7.5345 8.6401 0.1988 17 1 8.3397 8.7887 -1.0401 18 1 6.2049 9.2720 0.0033 19 1 8.2359 9.3023 1.3279 20 6 8.3780 3.4624 -0.2017 21 6 9.8666 3.8150 -0.1762 22 6 9.2320 3.2633 -1.4553 23 6 3.5958 3.5310 1.2429 24 6 2.0688 3.4484 1.3144 25 8 1.6621 2.0816 1.2211 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8544 0.9971 -1.0755 32 1 3.9990 0.8711 0.6952 33 1 5.9430 2.3600 -0.9938 34 1 5.9946 2.4077 0.7848 35 1 6.2985 7.1257 2.2637 36 1 8.0627 2.5702 0.3395 37 1 10.1333 4.8718 -0.1613 38 1 10.5307 3.1546 0.3814 39 1 9.4791 2.2402 -1.7388 40 1 9.0816 3.9573 -2.2823 41 1 4.0294 2.9996 2.0901 42 1 3.9067 4.5753 1.2700 43 1 1.7261 3.8657 2.2613 44 1 1.6351 4.0139 0.4897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:13 Heat of formation + Delta-G solvation = -65.830579 kcal Electronic energy + Delta-G solvation = -23288.448434 eV Core-core repulsion = 20013.352507 eV Total energy + Delta-G solvation = -3275.095927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51442 -38.37224 -36.19569 -34.14144 -33.81403 -32.63331 -30.93150 -29.53960 -28.35534 -25.12758 -23.73857 -22.94889 -21.70525 -21.23977 -20.85509 -19.84492 -18.77701 -16.41502 -16.15105 -16.03083 -15.58657 -14.78252 -14.55844 -14.46694 -14.24699 -13.83151 -13.60809 -13.34402 -13.21090 -12.87183 -12.52222 -12.03612 -11.81009 -11.63505 -11.36996 -11.29204 -11.03964 -10.96871 -10.91081 -10.87084 -10.80624 -10.52924 -10.35214 -10.14021 -9.95035 -9.92737 -9.82210 -9.69097 -9.11728 -8.68023 -7.87538 -6.98727 -6.09272 -3.84319 3.29511 3.39360 3.40900 4.02513 4.16158 4.28520 4.69255 4.79382 4.95807 5.03979 5.18574 5.22899 5.31772 5.35478 5.46076 5.50650 5.56492 5.60232 5.74192 5.77995 5.79104 5.85716 5.89763 5.97526 6.03282 6.09586 6.13055 6.19852 6.22023 6.22446 6.30415 6.35180 6.41814 6.54266 6.60170 6.77310 6.90843 6.93604 7.07063 7.56795 7.64137 8.30507 9.10435 9.20261 9.70686 10.34867 10.99780 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.004914 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.008142 B = 5696.659282 C = 6738.654526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.053 0.947 5 C -0.145 4.145 6 C -0.066 4.066 7 H 0.072 0.928 8 C -0.127 4.127 9 C 0.486 3.514 10 O -0.531 6.531 11 N -0.431 5.431 12 C -0.348 4.348 13 H 0.075 0.925 14 C 0.075 3.925 15 N -0.834 5.834 16 Si 0.910 3.090 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.077 3.923 21 C -0.175 4.175 22 C -0.209 4.209 23 C -0.151 4.151 24 C 0.064 3.936 25 O -0.385 6.385 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -11.435 -2.565 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.071 0.929 5 C -0.183 4.183 6 C -0.084 4.084 7 H 0.090 0.910 8 C -0.168 4.168 9 C 0.274 3.726 10 O -0.409 6.409 11 N -0.152 5.152 12 C -0.475 4.475 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.467 5.467 16 Si 0.737 3.263 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.213 1.213 20 C -0.029 4.029 21 C -0.212 4.212 22 C -0.248 4.248 23 C -0.188 4.188 24 C -0.012 4.012 25 O -0.305 6.305 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.601 -10.965 -2.282 12.522 hybrid contribution 0.541 0.956 -0.222 1.121 sum -5.060 -10.009 -2.504 11.491 Atomic orbital electron populations 1.21715 0.95588 1.01091 1.02239 1.21544 0.96396 0.94932 1.02423 1.22069 0.93809 0.93384 0.87336 0.92867 1.22309 0.95822 0.98019 1.02148 1.20834 0.94550 0.94119 0.98945 0.90958 1.21643 0.95645 0.97592 1.01927 1.19799 0.82658 0.89275 0.80902 1.90470 1.53566 1.46413 1.50487 1.42821 1.02385 1.03635 1.66393 1.18864 1.23675 0.83117 1.21828 0.90737 1.25207 0.95172 0.99396 0.93725 1.69830 1.33036 1.34187 1.09666 0.86194 0.77899 0.84046 0.78147 1.19684 1.20709 1.21264 1.21681 0.88804 0.93343 0.99112 1.23063 0.95539 1.02580 1.00057 1.23316 1.07342 1.00844 0.93268 1.22325 0.94641 1.05031 0.96850 1.22594 0.95278 0.81967 1.01347 1.87842 1.78788 1.25461 1.38384 0.93108 0.91966 0.93077 0.90933 0.91283 0.91465 0.91359 0.91015 0.90980 0.92777 0.88132 0.87546 0.89891 0.89887 0.89197 0.92355 0.87409 0.89440 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.81 37.16 0.36 -1.15 16 2 C -0.12 -1.27 5.64 -26.73 -0.15 -1.42 16 3 C 0.09 1.24 2.64 -26.68 -0.07 1.17 16 4 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -2.04 4.70 -26.59 -0.13 -2.16 16 6 C -0.07 -1.15 1.92 -90.44 -0.17 -1.32 16 7 H 0.07 1.37 7.96 -51.93 -0.41 0.96 16 8 C -0.13 -2.41 3.81 -27.88 -0.11 -2.52 16 9 C 0.49 11.95 6.70 -10.99 -0.07 11.87 16 10 O -0.53 -14.89 11.75 5.54 0.07 -14.82 16 11 N -0.43 -10.67 2.83 -107.73 -0.31 -10.97 16 12 C -0.35 -9.44 7.91 -14.93 -0.12 -9.56 16 13 H 0.07 1.98 7.27 -52.49 -0.38 1.60 16 14 C 0.08 2.10 4.39 -17.47 -0.08 2.02 16 15 N -0.83 -24.22 11.75 55.50 0.65 -23.57 16 16 Si 0.91 21.85 29.59 -169.99 -5.03 16.82 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.08 1.54 5.87 -67.94 -0.40 1.14 16 21 C -0.17 -3.16 9.80 -26.70 -0.26 -3.42 16 22 C -0.21 -3.56 10.36 -26.70 -0.28 -3.84 16 23 C -0.15 -2.82 5.12 -26.59 -0.14 -2.96 16 24 C 0.06 1.04 6.84 37.21 0.25 1.30 16 25 O -0.39 -6.02 9.94 -35.23 -0.35 -6.37 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 34 H 0.07 1.32 7.56 -51.93 -0.39 0.92 16 35 H 0.26 7.32 8.32 -40.82 -0.34 6.98 16 36 H 0.10 1.81 6.96 -51.92 -0.36 1.45 16 37 H 0.11 2.14 6.73 -51.93 -0.35 1.79 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.11 2.47 6.03 -51.93 -0.31 2.16 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -31.02 345.32 -8.78 -39.80 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.67 Total: 4.77 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.35 Total: -10.85 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.35 Total: -34.54 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.29 Total: -21.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.02 -8.78 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.029 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds