Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09000 * 109.49137 * 54.96742 * 3 2 1 5 5 C 1.53089 * 109.48110 * 174.99710 * 3 2 1 6 6 C 1.53182 * 109.21389 * 177.62109 * 5 3 2 7 7 H 1.08999 * 109.54200 * 183.12054 * 6 5 3 8 8 C 1.52994 * 109.54271 * 62.85398 * 6 5 3 9 9 C 1.50704 * 109.47017 * 174.99636 * 8 6 5 10 10 O 1.21295 * 119.99805 * 0.02562 * 9 8 6 11 11 N 1.34780 * 120.00010 * 179.97438 * 9 8 6 12 12 C 1.37091 * 120.00049 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00422 * 224.29826 * 12 11 9 14 14 C 1.38950 * 119.99915 * 44.30005 * 12 11 9 15 15 N 1.31417 * 120.00146 * 18.21783 * 14 12 11 16 16 Si 1.86806 * 120.00184 * 198.22154 * 14 12 11 17 17 H 1.48497 * 109.46925 * 89.99995 * 16 14 12 18 18 H 1.48504 * 109.46836 * 209.99960 * 16 14 12 19 19 H 1.48499 * 109.46840 * 329.99531 * 16 14 12 20 20 C 1.46498 * 119.99920 * 0.02562 * 11 9 8 21 21 C 1.53004 * 117.49891 * 183.22135 * 20 11 9 22 22 C 1.52997 * 59.99924 * 252.50311 * 21 20 11 23 23 C 1.53175 * 109.03657 * 302.98608 * 6 5 3 24 24 C 1.53090 * 109.16190 * 56.98076 * 23 6 5 25 25 O 1.42904 * 109.41579 * 302.39138 * 24 23 6 26 26 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47705 * 300.00638 * 1 2 3 28 28 H 1.09005 * 109.47020 * 60.00467 * 1 2 3 29 29 H 1.08997 * 109.47553 * 239.99864 * 2 1 3 30 30 H 1.09005 * 109.47020 * 119.99533 * 2 1 3 31 31 H 1.09003 * 109.52101 * 57.68434 * 5 3 2 32 32 H 1.08998 * 109.52032 * 297.55654 * 5 3 2 33 33 H 1.08997 * 109.47293 * 295.00190 * 8 6 5 34 34 H 1.09000 * 109.47093 * 55.00293 * 8 6 5 35 35 H 0.97001 * 120.00227 * 174.93805 * 15 14 12 36 36 H 1.09005 * 115.55002 * 328.92246 * 20 11 9 37 37 H 1.09001 * 117.49418 * 359.97438 * 21 20 11 38 38 H 1.08996 * 117.50140 * 145.01262 * 21 20 11 39 39 H 1.08994 * 117.50361 * 252.51053 * 22 21 20 40 40 H 1.09004 * 117.49812 * 107.48534 * 22 21 20 41 41 H 1.08997 * 109.52395 * 176.88342 * 23 6 5 42 42 H 1.09000 * 109.52135 * 297.07562 * 23 6 5 43 43 H 1.09007 * 109.48293 * 62.37473 * 24 23 6 44 44 H 1.09003 * 109.48270 * 182.39848 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 6 3.5657 1.4446 0.1259 6 6 4.0745 2.8882 0.0655 7 1 5.1640 2.8924 0.0989 8 6 3.5211 3.6761 1.2544 9 6 4.1190 5.0594 1.2624 10 8 4.9097 5.3833 0.4015 11 7 3.7744 5.9369 2.2256 12 6 4.3179 7.1955 2.2326 13 1 4.6735 7.6250 3.1575 14 6 4.4113 7.9185 1.0497 15 7 3.6803 7.5780 0.0120 16 14 5.5760 9.3745 0.9344 17 1 6.9053 8.9088 0.4640 18 1 5.0318 10.3688 -0.0250 19 1 5.7165 10.0031 2.2724 20 6 2.8190 5.5458 3.2651 21 6 2.4109 6.6099 4.2860 22 6 3.3341 5.4634 4.7034 23 6 3.5995 3.5311 -1.2411 24 6 2.0725 3.4497 -1.3151 25 8 1.6646 2.0833 -1.2224 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.9995 0.8709 -0.6932 32 1 3.8533 0.9965 1.0769 33 1 2.4369 3.7493 1.1688 34 1 3.7785 3.1636 2.1814 35 1 3.6902 8.1254 -0.7887 36 1 2.0613 4.8241 2.9597 37 1 2.8537 7.6007 4.1845 38 1 1.3846 6.5885 4.6524 39 1 2.9152 4.6877 5.3443 40 1 4.3840 5.7001 4.8763 41 1 3.9102 4.5755 -1.2672 42 1 4.0340 2.9995 -2.0877 43 1 1.6379 4.0155 -0.4909 44 1 1.7317 3.8675 -2.2624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332187213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = -61.979242 kcal Electronic energy + Delta-G solvation = -23782.853558 eV Core-core repulsion = 20507.924638 eV Total energy + Delta-G solvation = -3274.928920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75283 -38.27680 -36.16570 -34.06900 -33.74219 -32.63756 -30.93520 -29.50165 -28.04548 -25.10977 -24.03364 -23.18352 -21.72159 -21.19981 -21.17860 -19.76363 -18.09560 -16.39897 -16.11832 -16.05078 -15.71256 -14.85511 -14.67268 -14.26323 -14.09876 -13.70435 -13.60404 -13.42706 -13.27490 -12.85803 -12.49360 -12.31829 -11.74347 -11.52739 -11.37015 -11.18097 -11.02326 -10.95425 -10.88429 -10.81431 -10.80475 -10.61800 -10.48563 -10.16945 -9.97687 -9.94305 -9.76416 -9.61991 -8.89005 -8.68488 -7.89619 -7.00043 -6.10193 -3.84947 3.30777 3.37396 3.40809 4.07805 4.15270 4.28094 4.77557 4.80997 4.85123 5.08395 5.21950 5.27816 5.29188 5.42660 5.45035 5.55035 5.58513 5.62133 5.75372 5.77029 5.80191 5.86132 5.93563 6.01520 6.03060 6.10027 6.16850 6.20686 6.21328 6.24175 6.26527 6.34911 6.46216 6.59792 6.69539 6.76260 6.82542 6.92780 7.05825 7.62587 7.63856 8.29510 9.09440 9.19262 9.69661 10.33797 10.98933 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.005631 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.992719 B = 4971.257552 C = 5763.107926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.057 0.943 5 C -0.145 4.145 6 C -0.067 4.067 7 H 0.076 0.924 8 C -0.133 4.133 9 C 0.485 3.515 10 O -0.530 6.530 11 N -0.430 5.430 12 C -0.348 4.348 13 H 0.075 0.925 14 C 0.076 3.924 15 N -0.834 5.834 16 Si 0.911 3.089 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.077 3.923 21 C -0.174 4.174 22 C -0.209 4.209 23 C -0.152 4.152 24 C 0.064 3.936 25 O -0.386 6.386 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -11.288 2.610 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.182 4.182 6 C -0.086 4.086 7 H 0.095 0.905 8 C -0.174 4.174 9 C 0.273 3.727 10 O -0.408 6.408 11 N -0.152 5.152 12 C -0.475 4.475 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.467 5.467 16 Si 0.738 3.262 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.030 4.030 21 C -0.212 4.212 22 C -0.248 4.248 23 C -0.189 4.189 24 C -0.012 4.012 25 O -0.305 6.305 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.807 -11.194 1.768 12.310 hybrid contribution 0.549 0.948 0.241 1.121 sum -4.258 -10.246 2.008 11.276 Atomic orbital electron populations 1.21715 0.95556 1.01041 1.02348 1.21545 0.96453 0.95011 1.02278 1.22116 0.93804 0.93309 0.87589 0.92522 1.22272 0.96186 0.97766 1.02014 1.20831 1.00748 0.92348 0.94660 0.90548 1.21774 1.00892 0.96233 0.98497 1.19777 0.84056 0.84888 0.83944 1.90481 1.35964 1.78039 1.36323 1.42812 1.37098 1.11345 1.23909 1.18827 1.41203 0.92348 0.95144 0.90751 1.25196 0.95497 0.97074 0.95686 1.69816 1.35348 1.37231 1.04339 0.86242 0.81481 0.80709 0.77739 1.20395 1.21355 1.20012 1.21670 0.95316 1.00503 0.85482 1.23055 0.98648 0.96283 1.03217 1.23308 1.00004 1.01511 0.99952 1.22273 0.95317 1.04837 0.96484 1.22592 0.95121 0.81789 1.01741 1.87851 1.78903 1.25571 1.38218 0.93167 0.92987 0.91944 0.91428 0.90987 0.91454 0.91466 0.90919 0.91028 0.92713 0.88254 0.87515 0.89879 0.89880 0.89167 0.87334 0.92641 0.92976 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.81 37.16 0.36 -1.22 16 2 C -0.12 -1.30 5.65 -26.73 -0.15 -1.45 16 3 C 0.09 1.24 2.37 -26.68 -0.06 1.18 16 4 H 0.06 0.81 6.72 -51.93 -0.35 0.46 16 5 C -0.14 -2.04 4.91 -26.59 -0.13 -2.17 16 6 C -0.07 -1.18 2.33 -90.44 -0.21 -1.39 16 7 H 0.08 1.45 7.95 -51.93 -0.41 1.04 16 8 C -0.13 -2.51 3.22 -27.88 -0.09 -2.60 16 9 C 0.49 11.85 6.67 -10.98 -0.07 11.78 16 10 O -0.53 -14.83 11.78 5.54 0.07 -14.77 16 11 N -0.43 -10.57 2.83 -107.73 -0.31 -10.87 16 12 C -0.35 -9.39 7.92 -14.94 -0.12 -9.51 16 13 H 0.07 1.97 7.26 -52.49 -0.38 1.59 16 14 C 0.08 2.10 4.39 -17.47 -0.08 2.02 16 15 N -0.83 -24.00 11.74 55.50 0.65 -23.35 16 16 Si 0.91 21.81 29.59 -169.99 -5.03 16.78 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.08 1.52 5.87 -67.93 -0.40 1.12 16 21 C -0.17 -3.14 9.80 -26.73 -0.26 -3.40 16 22 C -0.21 -3.55 10.36 -26.73 -0.28 -3.83 16 23 C -0.15 -2.84 5.40 -26.59 -0.14 -2.98 16 24 C 0.06 1.10 6.57 37.20 0.24 1.35 16 25 O -0.39 -6.23 9.96 -35.23 -0.35 -6.59 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.32 4.45 -51.93 -0.23 1.09 16 34 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 35 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 36 H 0.10 1.78 6.96 -51.93 -0.36 1.42 16 37 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.11 2.50 5.96 -51.93 -0.31 2.19 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.96 6.49 -51.93 -0.34 0.63 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -30.65 338.82 -8.59 -39.25 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.34 Total: 5.54 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.39 Total: -11.09 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.35 Total: -34.23 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.29 Total: -21.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.65 -8.59 -39.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332187213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.732 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds