Wall clock time and date at job start Tue Mar 31 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09000 * 109.49137 * 54.96742 * 3 2 1 5 5 C 1.53089 * 109.48110 * 174.99710 * 3 2 1 6 6 C 1.53182 * 109.21389 * 177.62109 * 5 3 2 7 7 H 1.08999 * 109.54200 * 183.12054 * 6 5 3 8 8 C 1.52994 * 109.54271 * 62.85398 * 6 5 3 9 9 C 1.50704 * 109.47017 * 174.99636 * 8 6 5 10 10 O 1.21295 * 119.99805 * 0.02562 * 9 8 6 11 11 N 1.34780 * 120.00010 * 179.97438 * 9 8 6 12 12 C 1.37091 * 120.00049 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00422 * 224.29826 * 12 11 9 14 14 C 1.38950 * 119.99915 * 44.30005 * 12 11 9 15 15 N 1.31417 * 120.00146 * 18.21783 * 14 12 11 16 16 Si 1.86806 * 120.00184 * 198.22154 * 14 12 11 17 17 H 1.48497 * 109.46925 * 89.99995 * 16 14 12 18 18 H 1.48504 * 109.46836 * 209.99960 * 16 14 12 19 19 H 1.48499 * 109.46840 * 329.99531 * 16 14 12 20 20 C 1.46498 * 119.99920 * 0.02562 * 11 9 8 21 21 C 1.53004 * 117.49891 * 183.22135 * 20 11 9 22 22 C 1.52997 * 59.99924 * 252.50311 * 21 20 11 23 23 C 1.53175 * 109.03657 * 302.98608 * 6 5 3 24 24 C 1.53090 * 109.16190 * 56.98076 * 23 6 5 25 25 O 1.42904 * 109.41579 * 302.39138 * 24 23 6 26 26 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47705 * 300.00638 * 1 2 3 28 28 H 1.09005 * 109.47020 * 60.00467 * 1 2 3 29 29 H 1.08997 * 109.47553 * 239.99864 * 2 1 3 30 30 H 1.09005 * 109.47020 * 119.99533 * 2 1 3 31 31 H 1.09003 * 109.52101 * 57.68434 * 5 3 2 32 32 H 1.08998 * 109.52032 * 297.55654 * 5 3 2 33 33 H 1.08997 * 109.47293 * 295.00190 * 8 6 5 34 34 H 1.09000 * 109.47093 * 55.00293 * 8 6 5 35 35 H 0.97001 * 120.00227 * 174.93805 * 15 14 12 36 36 H 1.09005 * 115.55002 * 328.92246 * 20 11 9 37 37 H 1.09001 * 117.49418 * 359.97438 * 21 20 11 38 38 H 1.08996 * 117.50140 * 145.01262 * 21 20 11 39 39 H 1.08994 * 117.50361 * 252.51053 * 22 21 20 40 40 H 1.09004 * 117.49812 * 107.48534 * 22 21 20 41 41 H 1.08997 * 109.52395 * 176.88342 * 23 6 5 42 42 H 1.09000 * 109.52135 * 297.07562 * 23 6 5 43 43 H 1.09007 * 109.48293 * 62.37473 * 24 23 6 44 44 H 1.09003 * 109.48270 * 182.39848 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 6 3.5657 1.4446 0.1259 6 6 4.0745 2.8882 0.0655 7 1 5.1640 2.8924 0.0989 8 6 3.5211 3.6761 1.2544 9 6 4.1190 5.0594 1.2624 10 8 4.9097 5.3833 0.4015 11 7 3.7744 5.9369 2.2256 12 6 4.3179 7.1955 2.2326 13 1 4.6735 7.6250 3.1575 14 6 4.4113 7.9185 1.0497 15 7 3.6803 7.5780 0.0120 16 14 5.5760 9.3745 0.9344 17 1 6.9053 8.9088 0.4640 18 1 5.0318 10.3688 -0.0250 19 1 5.7165 10.0031 2.2724 20 6 2.8190 5.5458 3.2651 21 6 2.4109 6.6099 4.2860 22 6 3.3341 5.4634 4.7034 23 6 3.5995 3.5311 -1.2411 24 6 2.0725 3.4497 -1.3151 25 8 1.6646 2.0833 -1.2224 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.9995 0.8709 -0.6932 32 1 3.8533 0.9965 1.0769 33 1 2.4369 3.7493 1.1688 34 1 3.7785 3.1636 2.1814 35 1 3.6902 8.1254 -0.7887 36 1 2.0613 4.8241 2.9597 37 1 2.8537 7.6007 4.1845 38 1 1.3846 6.5885 4.6524 39 1 2.9152 4.6877 5.3443 40 1 4.3840 5.7001 4.8763 41 1 3.9102 4.5755 -1.2672 42 1 4.0340 2.9995 -2.0877 43 1 1.6379 4.0155 -0.4909 44 1 1.7317 3.8675 -2.2624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332187213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:17 Heat of formation + Delta-G solvation = -79.563344 kcal Electronic energy + Delta-G solvation = -23783.616062 eV Core-core repulsion = 20507.924638 eV Total energy + Delta-G solvation = -3275.691424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18665 -39.89135 -37.79117 -35.52376 -34.81178 -34.52424 -32.82819 -30.67278 -29.63284 -26.81358 -25.43991 -24.48425 -23.15446 -22.79060 -22.18915 -21.48387 -19.63100 -18.18342 -17.77935 -17.28936 -17.04291 -16.74336 -16.22363 -15.91183 -15.53876 -15.17772 -14.82392 -14.80539 -14.47456 -14.23700 -13.94159 -13.76474 -13.49914 -12.99877 -12.84087 -12.73313 -12.59328 -12.48506 -12.30534 -12.17662 -12.07743 -12.04801 -11.94169 -11.71226 -11.60328 -11.33931 -11.19919 -10.96512 -10.68982 -10.21163 -9.78094 -8.91761 -8.17077 -5.94359 1.34917 1.43005 1.47126 2.27887 2.45631 2.89390 3.11119 3.15655 3.38739 3.73738 3.85695 3.94279 4.07034 4.12963 4.19785 4.25787 4.29049 4.31409 4.39007 4.51876 4.54121 4.60807 4.68629 4.71679 4.79663 4.84021 4.89664 4.99859 5.05252 5.07041 5.16258 5.22927 5.23552 5.30027 5.32823 5.41319 5.47064 5.51815 5.52550 5.53140 6.23779 6.36759 7.08513 7.26443 7.76908 8.44182 8.90927 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.005631 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.992719 B = 4971.257552 C = 5763.107926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.082 3.918 4 H 0.058 0.942 5 C -0.134 4.134 6 C -0.066 4.066 7 H 0.056 0.944 8 C -0.116 4.116 9 C 0.469 3.531 10 O -0.578 6.578 11 N -0.448 5.448 12 C -0.356 4.356 13 H 0.072 0.928 14 C 0.027 3.973 15 N -0.866 5.866 16 Si 0.964 3.036 17 H -0.293 1.293 18 H -0.282 1.282 19 H -0.257 1.257 20 C 0.046 3.954 21 C -0.173 4.173 22 C -0.180 4.180 23 C -0.147 4.147 24 C 0.075 3.925 25 O -0.389 6.389 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -13.490 4.564 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.025 3.975 4 H 0.075 0.925 5 C -0.171 4.171 6 C -0.085 4.085 7 H 0.075 0.925 8 C -0.156 4.156 9 C 0.259 3.741 10 O -0.459 6.459 11 N -0.169 5.169 12 C -0.483 4.483 13 H 0.090 0.910 14 C -0.180 4.180 15 N -0.501 5.501 16 Si 0.790 3.210 17 H -0.220 1.220 18 H -0.208 1.208 19 H -0.181 1.181 20 C -0.059 4.059 21 C -0.211 4.211 22 C -0.218 4.218 23 C -0.185 4.185 24 C -0.002 4.002 25 O -0.309 6.309 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.915 -13.397 3.773 15.122 hybrid contribution 0.897 1.599 -0.295 1.857 sum -5.018 -11.797 3.478 13.284 Atomic orbital electron populations 1.21711 0.95189 1.02076 1.01647 1.21570 0.96748 0.92957 1.03540 1.22393 0.93664 0.94868 0.86615 0.92453 1.22217 0.96235 0.94884 1.03794 1.20806 0.99599 0.94637 0.93418 0.92526 1.21661 1.00819 0.92968 1.00188 1.20754 0.83546 0.86753 0.83037 1.90452 1.38061 1.79371 1.38017 1.43054 1.38064 1.10680 1.25113 1.19018 1.41067 0.93345 0.94887 0.91027 1.25937 0.96728 0.99680 0.95646 1.69924 1.37104 1.38414 1.04681 0.85406 0.78774 0.78353 0.78471 1.21979 1.20763 1.18107 1.21975 0.95942 1.02498 0.85496 1.23100 1.00599 0.94943 1.02432 1.23318 0.99114 1.01625 0.97785 1.22126 0.96552 1.02025 0.97771 1.22364 0.93752 0.82668 1.01381 1.87863 1.78842 1.24518 1.39684 0.91306 0.92688 0.93673 0.91372 0.88485 0.90819 0.88787 0.90082 0.88391 0.93356 0.86038 0.90257 0.86590 0.85673 0.90872 0.92130 0.92042 0.94453 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.81 71.98 0.71 -2.01 16 2 C -0.11 -2.09 5.65 30.59 0.17 -1.92 16 3 C 0.08 2.05 2.37 30.62 0.07 2.12 16 4 H 0.06 1.45 6.72 -2.39 -0.02 1.43 16 5 C -0.13 -3.40 4.91 30.68 0.15 -3.25 16 6 C -0.07 -2.28 2.33 -10.68 -0.02 -2.30 16 7 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 8 C -0.12 -4.26 3.22 29.85 0.10 -4.16 16 9 C 0.47 23.37 6.67 87.66 0.58 23.95 16 10 O -0.58 -33.82 11.78 -3.08 -0.04 -33.86 16 11 N -0.45 -22.19 2.83 -613.12 -1.74 -23.93 16 12 C -0.36 -19.58 7.92 84.04 0.67 -18.91 16 13 H 0.07 3.87 7.26 -2.91 -0.02 3.85 16 14 C 0.03 1.51 4.39 84.93 0.37 1.88 16 15 N -0.87 -52.01 11.74 21.66 0.25 -51.75 16 16 Si 0.96 46.09 29.59 68.60 2.03 48.12 16 17 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.05 1.75 5.87 44.99 0.26 2.01 16 21 C -0.17 -5.89 9.80 30.59 0.30 -5.59 16 22 C -0.18 -5.57 10.36 30.59 0.32 -5.25 16 23 C -0.15 -5.66 5.40 30.68 0.17 -5.50 16 24 C 0.07 2.61 6.57 72.01 0.47 3.08 16 25 O -0.39 -12.04 9.96 -148.98 -1.48 -13.53 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.97 7.83 -2.38 -0.02 0.95 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.85 4.45 -2.39 -0.01 2.84 16 34 H 0.10 3.05 8.11 -2.39 -0.02 3.03 16 35 H 0.26 15.00 8.32 -92.71 -0.77 14.23 16 36 H 0.12 4.02 6.96 -2.38 -0.02 4.00 16 37 H 0.08 3.15 6.72 -2.39 -0.02 3.13 16 38 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.06 2.97 5.96 -2.39 -0.01 2.95 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.40 6.49 -2.38 -0.02 1.38 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -70.12 338.82 4.31 -65.80 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.97 Total: 24.99 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.32 Total: -15.85 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.48 Total: -75.68 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.52 Total: -47.39 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -70.12 4.31 -65.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332187213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.759 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds