Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47531 * 2 1 4 4 C 1.52998 * 109.47070 * 239.99802 * 2 1 3 5 5 C 1.53005 * 109.47012 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46800 * 60.00905 * 5 4 2 7 7 C 1.53011 * 109.46780 * 299.99544 * 6 5 4 8 8 H 1.08993 * 109.46814 * 300.00038 * 7 6 5 9 9 C 1.53002 * 109.46902 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47414 * 65.00078 * 9 7 6 11 11 O 1.21281 * 119.99636 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99934 * 179.97438 * 10 9 7 13 13 C 1.47582 * 134.49079 * 179.97438 * 12 10 9 14 14 C 1.53943 * 86.11311 * 155.36073 * 13 12 10 15 15 O 1.42905 * 113.74645 * 269.15338 * 14 13 12 16 16 C 1.50702 * 113.73813 * 137.95310 * 14 13 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99942 * 179.72121 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47574 * 134.49266 * 0.02562 * 12 10 9 25 25 C 1.52992 * 109.46900 * 60.00191 * 7 6 5 26 26 H 1.09009 * 109.46911 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47220 * 299.99446 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00489 * 1 2 3 29 29 H 1.08998 * 109.47198 * 60.00363 * 4 2 1 30 30 H 1.08996 * 109.47497 * 299.99890 * 4 2 1 31 31 H 1.08993 * 109.47778 * 300.00264 * 5 4 2 32 32 H 1.09006 * 109.47134 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.47390 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47942 * 59.99096 * 6 5 4 35 35 H 1.09005 * 109.46792 * 304.99743 * 9 7 6 36 36 H 1.08997 * 109.46751 * 184.99848 * 9 7 6 37 37 H 1.09009 * 113.76507 * 41.06417 * 13 12 10 38 38 H 1.08991 * 113.77115 * 269.66599 * 13 12 10 39 39 H 0.96696 * 114.00381 * 178.07547 * 15 14 13 40 40 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 41 41 H 1.08998 * 113.77305 * 90.33513 * 24 12 10 42 42 H 1.08999 * 113.77011 * 318.94031 * 24 12 10 43 43 H 1.09002 * 109.47719 * 60.00098 * 25 7 6 44 44 H 1.09002 * 109.47387 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4418 -0.0003 7 6 3.5704 -0.7205 1.2490 8 1 3.9335 0.3072 1.2488 9 6 4.0814 -1.4411 2.4982 10 6 5.5832 -1.3338 2.5612 11 8 6.1856 -0.7399 1.6921 12 7 6.2569 -1.8979 3.5832 13 6 7.6816 -1.9903 3.9571 14 6 7.1824 -2.1736 5.4017 15 8 7.0515 -0.9482 6.1252 16 6 7.9280 -3.2334 6.1712 17 1 8.7302 -3.7805 5.6983 18 6 7.5901 -3.5003 7.4811 19 7 6.6136 -2.8339 8.0572 20 14 8.5193 -4.8086 8.4373 21 1 9.5641 -5.4080 7.5689 22 1 9.1592 -4.1914 9.6269 23 1 7.5737 -5.8660 8.8767 24 6 5.8662 -2.6721 4.7773 25 6 2.0405 -0.7210 1.2492 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7489 -1.2492 31 1 3.9331 0.3070 -1.2497 32 1 3.9334 -1.2350 -2.1393 33 1 5.1705 -1.4410 -0.0002 34 1 3.7174 -2.4695 0.0000 35 1 3.7936 -2.4916 2.4549 36 1 3.6468 -0.9817 3.3860 37 1 8.2381 -1.0665 3.7984 38 1 8.1862 -2.8673 3.5519 39 1 6.7104 -1.0563 7.0235 40 1 6.3756 -3.0219 8.9786 41 1 5.8382 -3.7493 4.6128 42 1 4.9729 -2.2931 5.2737 43 1 1.6774 -1.7487 1.2494 44 1 1.6771 -0.2068 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334181473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = -88.102851 kcal Electronic energy + Delta-G solvation = -22679.860233 eV Core-core repulsion = 19403.798508 eV Total energy + Delta-G solvation = -3276.061725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78953 -38.74156 -37.15656 -33.93568 -33.21461 -32.20114 -31.77496 -29.06940 -26.97448 -26.31221 -25.23616 -24.89565 -21.98286 -21.00073 -19.80680 -19.67015 -18.10748 -17.37096 -16.25677 -15.48598 -15.22303 -15.11448 -14.93467 -14.38912 -14.18660 -14.12169 -13.64075 -13.48277 -12.97776 -12.69557 -12.43242 -12.27477 -12.10665 -11.92867 -11.80522 -11.55543 -11.44792 -11.26894 -11.07929 -11.00159 -10.91826 -10.74635 -10.50399 -10.35710 -10.28870 -10.15036 -9.92361 -9.53599 -9.06950 -8.76029 -8.37466 -7.79240 -6.40070 -4.50084 3.12825 3.22458 3.25863 3.28576 3.61429 4.18106 4.63199 4.67181 4.74617 4.84113 5.05685 5.09940 5.25131 5.30803 5.45191 5.50693 5.53141 5.59175 5.64529 5.68425 5.74316 5.81923 5.86028 5.90883 5.99533 6.00296 6.02833 6.19330 6.22890 6.27382 6.29130 6.37154 6.40359 6.51743 6.62387 6.65126 6.66241 6.71834 7.11068 7.62809 7.82446 8.53162 8.55670 8.83872 9.21292 9.46278 10.66501 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.003407 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.809079 B = 8216.812927 C = 8543.738278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.068 4.068 8 H 0.076 0.924 9 C -0.130 4.130 10 C 0.527 3.473 11 O -0.563 6.563 12 N -0.634 5.634 13 C 0.110 3.890 14 C 0.238 3.762 15 O -0.573 6.573 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.077 3.923 25 C -0.109 4.109 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 1.222 -11.175 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.087 4.087 8 H 0.094 0.906 9 C -0.170 4.170 10 C 0.317 3.683 11 O -0.444 6.444 12 N -0.367 5.367 13 C -0.012 4.012 14 C 0.196 3.804 15 O -0.386 6.386 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.046 4.046 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.989 1.886 -12.150 15.842 hybrid contribution 0.054 -1.046 1.197 1.591 sum -9.935 0.840 -10.953 14.811 Atomic orbital electron populations 1.21833 0.95533 1.01626 1.01399 1.21120 0.95012 0.99764 0.95146 0.91299 1.21605 0.95992 1.00348 0.97112 1.21503 0.95010 1.00952 0.97965 1.21709 1.02591 0.98037 0.93349 1.20875 0.94077 1.00327 0.93418 0.90574 1.21640 0.92837 1.02563 0.99968 1.20237 0.89520 0.78771 0.79732 1.90585 1.70704 1.44667 1.38447 1.50209 1.10186 1.52708 1.23597 1.23426 0.82821 1.00697 0.94221 1.19858 0.89465 0.83664 0.87387 1.86057 1.88525 1.31031 1.32951 1.21574 1.18983 1.19307 0.97520 0.91042 1.25073 0.94364 0.96268 0.97379 1.69326 1.28765 1.41704 1.14127 0.86283 0.79753 0.80817 0.79681 1.19454 1.20645 1.20688 1.24294 1.02530 0.95401 0.82386 1.21664 0.95092 1.00591 0.97351 0.92821 0.92773 0.92964 0.92532 0.92226 0.92086 0.92448 0.89809 0.92941 0.89618 0.89380 0.91281 0.89843 0.75218 0.91725 0.90133 0.91458 0.92016 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 6 C -0.12 -1.63 4.95 -26.73 -0.13 -1.77 16 7 C -0.07 -0.94 1.84 -90.62 -0.17 -1.10 16 8 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 9 C -0.13 -2.00 4.93 -27.88 -0.14 -2.14 16 10 C 0.53 10.49 7.77 -10.99 -0.09 10.41 16 11 O -0.56 -12.51 14.69 5.56 0.08 -12.43 16 12 N -0.63 -13.33 3.61 -178.33 -0.64 -13.97 16 13 C 0.11 2.43 8.22 -2.98 -0.02 2.40 16 14 C 0.24 5.68 1.45 -90.83 -0.13 5.55 16 15 O -0.57 -14.74 13.48 -35.23 -0.48 -15.22 16 16 C -0.54 -13.36 8.62 -34.44 -0.30 -13.66 16 17 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 19 N -0.90 -22.54 11.08 55.43 0.61 -21.92 16 20 Si 0.91 19.32 29.54 -169.99 -5.02 14.30 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.08 1.63 8.01 -2.96 -0.02 1.60 16 25 C -0.11 -1.22 4.49 -26.73 -0.12 -1.34 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.39 5.95 -51.93 -0.31 1.08 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.56 8.14 -51.92 -0.42 1.13 16 38 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 39 H 0.39 10.14 6.45 45.56 0.29 10.44 16 40 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 41 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -27.11 347.21 -8.78 -35.89 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.16 Total: 11.34 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.42 Total: -3.21 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.03 Total: -35.90 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.39 Total: -27.65 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.11 -8.78 -35.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.213 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds