Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47628 * 2 1 4 4 C 1.53001 * 109.47164 * 119.99920 * 2 1 3 5 5 C 1.53002 * 109.47052 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47239 * 299.99910 * 5 4 2 7 7 C 1.53001 * 109.47025 * 60.00073 * 6 5 4 8 8 H 1.09001 * 109.46777 * 59.99721 * 7 6 5 9 9 C 1.52992 * 109.47281 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47241 * 295.00060 * 9 7 6 11 11 O 1.21283 * 120.00121 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00280 * 179.97438 * 10 9 7 13 13 C 1.47066 * 136.05490 * 359.64390 * 12 10 9 14 14 C 1.53241 * 88.07937 * 207.19380 * 13 12 10 15 15 O 1.42903 * 114.01688 * 87.71272 * 14 13 12 16 16 C 1.50702 * 114.50283 * 220.45187 * 14 13 12 17 17 H 1.08005 * 119.99562 * 99.19836 * 16 14 13 18 18 C 1.37872 * 120.00361 * 279.20366 * 16 14 13 19 19 N 1.31514 * 119.99997 * 7.46194 * 18 16 14 20 20 Si 1.86798 * 119.99966 * 187.47072 * 18 16 14 21 21 H 1.48500 * 109.47233 * 84.98925 * 20 18 16 22 22 H 1.48503 * 109.46725 * 204.98601 * 20 18 16 23 23 H 1.48495 * 109.47174 * 324.98199 * 20 18 16 24 24 C 1.47065 * 136.05902 * 179.97438 * 12 10 9 25 25 C 1.53002 * 109.47052 * 300.00041 * 7 6 5 26 26 H 1.09001 * 109.47313 * 299.99878 * 1 2 3 27 27 H 1.08996 * 109.47108 * 59.99998 * 1 2 3 28 28 H 1.09002 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47301 * 60.00126 * 4 2 1 30 30 H 1.08993 * 109.47317 * 300.00012 * 4 2 1 31 31 H 1.09008 * 109.46815 * 180.02562 * 5 4 2 32 32 H 1.08991 * 109.47047 * 60.00459 * 5 4 2 33 33 H 1.09002 * 109.46855 * 300.00069 * 6 5 4 34 34 H 1.09000 * 109.47135 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47285 * 55.00012 * 9 7 6 36 36 H 1.08997 * 109.47345 * 174.99718 * 9 7 6 37 37 H 1.08999 * 113.46561 * 321.92165 * 13 12 10 38 38 H 1.08996 * 113.47061 * 92.36711 * 13 12 10 39 39 H 0.96696 * 113.99776 * 80.59975 * 15 14 13 40 40 H 0.96999 * 120.00002 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.47159 * 267.63441 * 24 12 10 42 42 H 1.08998 * 113.46494 * 38.01477 * 24 12 10 43 43 H 1.08996 * 109.46997 * 179.97438 * 25 7 6 44 44 H 1.09002 * 109.46801 * 299.99980 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9331 0.3053 -1.2498 9 6 4.0794 -1.4434 -2.4988 10 6 5.5813 -1.3371 -2.5623 11 8 6.1844 -0.7425 -1.6941 12 7 6.2544 -1.9027 -3.5839 13 6 5.9035 -2.6829 -4.7802 14 6 7.2945 -3.3217 -4.7084 15 8 7.3584 -4.4848 -3.8806 16 6 7.9685 -3.5033 -6.0440 17 1 8.7093 -2.7911 -6.3763 18 6 7.6394 -4.5786 -6.8418 19 7 6.6375 -5.3625 -6.5083 20 14 8.6169 -4.9221 -8.3961 21 1 9.8203 -5.7235 -8.0572 22 1 7.7722 -5.6789 -9.3548 23 1 9.0350 -3.6373 -9.0120 24 6 7.6633 -2.0162 -3.9898 25 6 2.0394 -0.7217 -1.2493 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6767 -1.7489 1.2493 30 1 1.6767 -0.2075 2.1392 31 1 3.9333 -1.2360 2.1387 32 1 3.9336 0.3057 1.2487 33 1 3.7157 -2.4710 0.0000 34 1 5.1695 -1.4442 -0.0003 35 1 3.7911 -2.4937 -2.4552 36 1 3.6448 -0.9840 -3.3865 37 1 5.0927 -3.3920 -4.6134 38 1 5.7524 -2.0703 -5.6690 39 1 7.0415 -5.2910 -4.3101 40 1 6.4057 -6.1187 -7.0698 41 1 7.9855 -1.2245 -4.6661 42 1 8.3462 -2.1586 -3.1523 43 1 1.6761 -0.2075 -2.1390 44 1 1.6758 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334181477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -84.623899 kcal Electronic energy + Delta-G solvation = -22706.449341 eV Core-core repulsion = 19430.538475 eV Total energy + Delta-G solvation = -3275.910866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84151 -38.81784 -37.21994 -33.98410 -33.21009 -32.29625 -31.76352 -29.12915 -26.98499 -26.29798 -25.11573 -24.87845 -21.96886 -21.05094 -19.90097 -19.65851 -18.13294 -17.32577 -16.22481 -15.48522 -15.19777 -15.15696 -14.84992 -14.38065 -14.22822 -14.18830 -13.71515 -13.37383 -13.11256 -12.69071 -12.41955 -12.32668 -12.12641 -11.91713 -11.79408 -11.64412 -11.42962 -11.23876 -11.06063 -10.97169 -10.88368 -10.73699 -10.49303 -10.35123 -10.29166 -10.14101 -9.91062 -9.43041 -9.06574 -8.81380 -8.39741 -7.79295 -6.39735 -4.48540 3.15682 3.23270 3.24681 3.27793 3.61814 4.19425 4.64325 4.68047 4.75664 4.83592 5.07198 5.10980 5.26520 5.31583 5.46510 5.52220 5.52678 5.56385 5.60912 5.67953 5.76615 5.85116 5.86597 5.90882 5.94719 6.00574 6.02983 6.20280 6.24997 6.27602 6.30367 6.38540 6.42196 6.55412 6.63233 6.67904 6.68822 6.71910 7.07024 7.61862 7.83364 8.53785 8.58570 8.83603 9.22192 9.28291 10.67435 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003423 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.838281 B = 8177.135873 C = 8482.857225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.067 4.067 8 H 0.075 0.925 9 C -0.129 4.129 10 C 0.535 3.465 11 O -0.563 6.563 12 N -0.638 5.638 13 C 0.078 3.922 14 C 0.238 3.762 15 O -0.568 6.568 16 C -0.537 4.537 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.108 3.892 25 C -0.110 4.110 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 6.538 7.982 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.086 4.086 8 H 0.093 0.907 9 C -0.169 4.169 10 C 0.325 3.675 11 O -0.443 6.443 12 N -0.371 5.371 13 C -0.045 4.045 14 C 0.197 3.803 15 O -0.377 6.377 16 C -0.575 4.575 17 H 0.089 0.911 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.014 4.014 25 C -0.147 4.147 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.204 7.204 8.979 15.383 hybrid contribution 0.082 -0.679 -1.432 1.587 sum -10.122 6.525 7.546 14.211 Atomic orbital electron populations 1.21833 0.95548 1.01669 1.01351 1.21116 0.94997 0.99692 0.95188 0.91353 1.21609 0.96032 1.00401 0.97056 1.21501 0.94966 1.00869 0.98057 1.21712 1.02696 0.98152 0.93220 1.20871 0.94078 1.00151 0.93516 0.90690 1.21633 0.92586 1.02918 0.99788 1.20100 0.89309 0.77556 0.80559 1.90590 1.70528 1.44213 1.39006 1.49822 1.10861 1.53128 1.23339 1.24058 1.02985 0.92692 0.84799 1.19518 0.89781 0.82672 0.88344 1.86087 1.88141 1.19754 1.43703 1.21362 1.24081 1.10896 1.01157 0.91053 1.25058 0.94171 0.95410 0.98310 1.69661 1.26376 1.17274 1.39912 0.86399 0.79982 0.78680 0.81766 1.20168 1.21052 1.19642 1.23240 0.83040 0.97665 0.97457 1.21668 0.95088 1.00678 0.97276 0.92974 0.92819 0.92775 0.92171 0.92535 0.92397 0.92161 0.92793 0.89740 0.89332 0.89574 0.91683 0.90176 0.76148 0.91877 0.89779 0.91724 0.92109 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.16 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.39 5.92 -26.73 -0.16 -1.54 16 6 C -0.12 -1.72 4.94 -26.73 -0.13 -1.85 16 7 C -0.07 -0.93 1.84 -90.62 -0.17 -1.09 16 8 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 9 C -0.13 -1.99 5.00 -27.89 -0.14 -2.13 16 10 C 0.53 10.66 7.79 -10.98 -0.09 10.57 16 11 O -0.56 -12.52 14.74 5.56 0.08 -12.44 16 12 N -0.64 -13.45 3.69 -185.38 -0.68 -14.14 16 13 C 0.08 1.66 7.83 -8.64 -0.07 1.59 16 14 C 0.24 5.66 1.40 -91.38 -0.13 5.53 16 15 O -0.57 -14.32 13.51 -35.23 -0.48 -14.79 16 16 C -0.54 -13.36 8.67 -34.44 -0.30 -13.66 16 17 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 18 C 0.07 1.82 5.33 -17.82 -0.10 1.73 16 19 N -0.89 -22.31 11.64 55.43 0.65 -21.67 16 20 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.11 2.38 8.04 -8.50 -0.07 2.31 16 25 C -0.11 -1.22 4.48 -26.73 -0.12 -1.34 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 39 H 0.39 9.70 7.10 45.56 0.32 10.03 16 40 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 42 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -26.98 348.28 -8.84 -35.82 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.13 Total: 10.92 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.50 Total: -3.24 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.04 Total: -35.81 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.39 Total: -27.23 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.98 -8.84 -35.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.809 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds