Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00329 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 C 1.52992 * 109.47482 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.46966 * 64.99950 * 9 7 6 11 11 O 1.21279 * 119.99998 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99809 * 180.02562 * 10 9 7 13 13 C 1.47065 * 136.06012 * 359.62741 * 12 10 9 14 14 C 1.53235 * 88.08280 * 207.20634 * 13 12 10 15 15 O 1.42898 * 114.01890 * 87.71821 * 14 13 12 16 16 C 1.50703 * 114.50493 * 220.45808 * 14 13 12 17 17 H 1.07999 * 120.00064 * 93.83943 * 16 14 13 18 18 C 1.37884 * 119.99879 * 273.84580 * 16 14 13 19 19 N 1.31513 * 120.00032 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99698 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47115 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46764 * 120.00116 * 20 18 16 23 23 H 1.48504 * 109.47044 * 240.00043 * 20 18 16 24 24 C 1.47066 * 136.05453 * 180.02562 * 12 10 9 25 25 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 26 26 H 1.09004 * 109.46976 * 299.99386 * 1 2 3 27 27 H 1.09000 * 109.47380 * 59.99511 * 1 2 3 28 28 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 30 30 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 32 32 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 34 34 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47729 * 184.99759 * 9 7 6 36 36 H 1.09001 * 109.47563 * 305.00337 * 9 7 6 37 37 H 1.08999 * 113.46818 * 321.93946 * 13 12 10 38 38 H 1.08997 * 113.46681 * 92.37555 * 13 12 10 39 39 H 0.96704 * 113.99829 * 86.38420 * 15 14 13 40 40 H 0.97001 * 119.99737 * 179.97438 * 19 18 16 41 41 H 1.09008 * 113.46562 * 267.61900 * 24 12 10 42 42 H 1.08997 * 113.47171 * 38.05759 * 24 12 10 43 43 H 1.09000 * 109.47486 * 180.02562 * 25 7 6 44 44 H 1.09002 * 109.46716 * 60.00091 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2490 6 6 2.0401 -2.8850 -0.0003 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2494 9 6 2.0394 -2.8851 -2.4987 10 6 1.4381 -4.2655 -2.5620 11 8 0.6766 -4.6356 -1.6936 12 7 1.7465 -5.0887 -3.5836 13 6 2.5886 -5.0137 -4.7869 14 6 1.6557 -6.0382 -5.4411 15 8 0.5305 -5.4596 -6.1052 16 6 2.3582 -7.0874 -6.2638 17 1 2.6242 -8.0345 -5.8181 18 6 2.6614 -6.8382 -7.5856 19 7 2.3380 -5.6847 -8.1282 20 14 3.5328 -8.1384 -8.6052 21 1 3.7858 -9.3376 -7.7666 22 1 2.6805 -8.5135 -9.7620 23 1 4.8253 -7.5975 -9.0973 24 6 1.3833 -6.4549 -3.9893 25 6 2.0399 -0.7211 -1.2494 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6768 -0.2075 2.1391 30 1 3.1301 -0.7216 1.2488 31 1 0.4402 -2.1638 1.2491 32 1 1.8939 -2.6778 2.1387 33 1 3.1301 -2.8849 -0.0004 34 1 1.6764 -3.9125 -0.0006 35 1 1.7510 -2.3222 -3.3864 36 1 3.1257 -2.9637 -2.4554 37 1 2.5671 -4.0376 -5.2716 38 1 3.6014 -5.3856 -4.6318 39 1 0.7053 -5.1981 -7.0197 40 1 2.5516 -5.5092 -9.0580 41 1 2.0716 -7.2149 -3.6194 42 1 0.3392 -6.7017 -3.7972 43 1 1.6761 -0.2071 -2.1391 44 1 3.1299 -0.7211 -1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334181478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -79.943155 kcal Electronic energy + Delta-G solvation = -22856.732429 eV Core-core repulsion = 19581.024535 eV Total energy + Delta-G solvation = -3275.707894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92789 -38.98405 -37.24777 -33.99677 -32.93413 -32.19881 -31.46579 -29.12991 -26.97000 -26.68976 -25.12626 -24.88381 -22.23881 -21.42935 -19.95141 -18.64054 -18.11854 -17.37903 -16.21945 -15.62071 -15.42343 -15.10996 -14.96352 -14.44725 -14.21333 -13.96978 -13.67822 -13.51253 -12.90372 -12.62117 -12.61082 -12.35331 -12.02789 -11.91621 -11.64829 -11.57291 -11.37784 -11.35779 -11.09158 -10.99896 -10.94097 -10.78815 -10.48184 -10.26125 -10.20847 -9.98869 -9.92225 -9.51955 -9.06364 -8.76721 -8.37047 -7.81014 -6.41661 -4.51895 3.12277 3.21838 3.25201 3.27853 3.62012 4.17064 4.68241 4.70178 4.73083 4.81681 5.06048 5.14720 5.28413 5.35245 5.38798 5.51000 5.54551 5.65259 5.66776 5.69234 5.75728 5.83495 5.88688 5.95284 5.98898 6.00167 6.05671 6.19980 6.24774 6.29299 6.30663 6.38475 6.43024 6.51426 6.64412 6.66069 6.68152 6.71144 7.11333 7.61859 7.80268 8.51338 8.58693 8.83806 9.19739 9.48535 10.64989 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.003444 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.155718 B = 8127.289541 C = 8289.525928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.130 4.130 10 C 0.535 3.465 11 O -0.562 6.562 12 N -0.636 5.636 13 C 0.072 3.928 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.106 3.894 25 C -0.111 4.111 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 9.482 11.201 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.088 4.088 8 H 0.098 0.902 9 C -0.170 4.170 10 C 0.325 3.675 11 O -0.443 6.443 12 N -0.370 5.370 13 C -0.051 4.051 14 C 0.197 3.803 15 O -0.385 6.385 16 C -0.571 4.571 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.017 4.017 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.282 9.432 12.217 15.488 hybrid contribution 0.937 -0.394 -1.234 1.598 sum 2.219 9.038 10.983 14.396 Atomic orbital electron populations 1.21961 0.95396 1.02523 1.01120 1.21063 0.95982 0.98656 0.95095 0.91657 1.21575 1.00292 0.96098 0.97167 1.21539 1.01090 0.95056 0.97887 1.21702 0.99615 1.00960 0.93385 1.20917 1.01315 0.93293 0.93310 0.90167 1.21641 1.01563 0.93685 1.00080 1.20095 0.81529 0.86427 0.79454 1.90587 1.37967 1.77282 1.38460 1.49762 1.47157 1.16426 1.23627 1.24126 0.96395 1.02095 0.82486 1.19506 0.83717 0.89368 0.87731 1.86047 1.36851 1.82582 1.33033 1.21485 1.37878 1.01746 0.95980 0.90907 1.25085 0.94652 0.95702 0.97653 1.69273 1.47520 1.22560 1.14554 0.86262 0.79070 0.81248 0.79844 1.19410 1.20608 1.20660 1.23295 1.00356 0.83656 0.94373 1.21639 1.00441 0.95308 0.97423 0.93176 0.92899 0.91616 0.92517 0.92280 0.91735 0.92568 0.92982 0.89843 0.89350 0.89642 0.91822 0.90209 0.75016 0.91643 0.89877 0.91687 0.91995 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.50 37.16 0.32 -1.23 16 2 C -0.09 -0.90 3.19 -90.62 -0.29 -1.19 16 3 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.13 5.45 -26.73 -0.15 -1.27 16 5 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 6 C -0.12 -1.62 4.95 -26.73 -0.13 -1.76 16 7 C -0.07 -0.95 1.56 -90.63 -0.14 -1.09 16 8 H 0.08 1.23 6.24 -51.93 -0.32 0.90 16 9 C -0.13 -2.00 5.00 -27.88 -0.14 -2.14 16 10 C 0.53 10.68 7.79 -10.98 -0.09 10.59 16 11 O -0.56 -12.50 14.74 5.56 0.08 -12.42 16 12 N -0.64 -13.47 3.69 -185.40 -0.68 -14.15 16 13 C 0.07 1.54 7.83 -8.65 -0.07 1.47 16 14 C 0.24 5.72 1.57 -91.40 -0.14 5.58 16 15 O -0.57 -14.81 13.53 -35.23 -0.48 -15.29 16 16 C -0.53 -13.27 8.70 -34.44 -0.30 -13.57 16 17 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 18 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 19 N -0.90 -22.55 11.01 55.43 0.61 -21.94 16 20 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.11 2.33 8.03 -8.52 -0.07 2.26 16 25 C -0.11 -1.23 4.73 -26.73 -0.13 -1.36 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.38 5.95 -51.93 -0.31 1.07 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 39 H 0.39 10.25 6.33 45.56 0.29 10.54 16 40 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.08 1.68 8.10 -51.92 -0.42 1.26 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -27.13 340.11 -8.75 -35.87 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -6.81 Total: 12.15 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.57 Total: -3.55 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.07 Total: -36.09 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.39 Total: -27.71 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.13 -8.75 -35.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334181478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.069 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds