Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09001 * 110.27450 * 305.70363 * 3 2 1 5 5 C 1.54941 * 110.31243 * 183.61310 * 3 2 1 6 6 C 1.55311 * 100.94477 * 204.63942 * 5 3 2 7 7 C 1.54390 * 102.24909 * 34.13028 * 6 5 3 8 8 H 1.09008 * 109.82699 * 98.24746 * 7 6 5 9 9 C 1.50700 * 109.82914 * 219.12691 * 7 6 5 10 10 O 1.21281 * 119.99192 * 115.00151 * 9 7 6 11 11 N 1.34771 * 120.00209 * 295.00500 * 9 7 6 12 12 C 1.46933 * 120.63120 * 359.71788 * 11 9 7 13 13 C 1.52760 * 109.00622 * 233.58731 * 12 11 9 14 14 C 1.53038 * 109.38304 * 305.58642 * 13 12 11 15 15 C 1.50701 * 109.46079 * 181.26452 * 14 13 12 16 16 H 1.08000 * 119.99736 * 239.93226 * 15 14 13 17 17 C 1.37877 * 120.00285 * 59.93278 * 15 14 13 18 18 N 1.31517 * 119.99440 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47235 * 89.99608 * 19 17 15 21 21 H 1.48496 * 109.47198 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47107 * 329.99794 * 19 17 15 23 23 C 1.53045 * 109.53956 * 61.24458 * 14 13 12 24 24 C 1.46925 * 120.62875 * 180.02562 * 11 9 7 25 25 O 1.43374 * 107.61388 * 338.56464 * 7 6 5 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09001 * 111.12693 * 322.55728 * 5 3 2 32 32 H 1.09000 * 111.12575 * 86.67988 * 5 3 2 33 33 H 1.08996 * 110.85011 * 152.32001 * 6 5 3 34 34 H 1.08994 * 110.84964 * 275.73850 * 6 5 3 35 35 H 1.08996 * 109.58215 * 353.41906 * 12 11 9 36 36 H 1.08998 * 109.58422 * 113.84590 * 12 11 9 37 37 H 1.08999 * 109.56336 * 185.55631 * 13 12 11 38 38 H 1.09000 * 109.36130 * 65.49527 * 13 12 11 39 39 H 1.09002 * 109.45392 * 301.22839 * 14 13 12 40 40 H 0.97004 * 119.99177 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.49762 * 178.68195 * 23 14 13 42 42 H 1.08994 * 109.52231 * 58.60252 * 23 14 13 43 43 H 1.09002 * 109.58398 * 246.15290 * 24 11 9 44 44 H 1.08997 * 109.59058 * 6.57756 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9975 -0.8303 5 6 3.5865 1.4662 -0.0916 6 6 3.8991 2.8429 0.5558 7 6 2.7947 2.9589 1.6284 8 1 3.1904 2.6628 2.6000 9 6 2.2913 4.3779 1.6924 10 8 1.1459 4.6294 1.3829 11 7 3.1138 5.3673 2.0934 12 6 4.5022 5.0773 2.4772 13 6 4.7623 5.6464 3.8707 14 6 4.4029 7.1339 3.8871 15 6 4.6881 7.7044 5.2525 16 1 3.8897 8.1447 5.8313 17 6 5.9683 7.6641 5.7629 18 7 6.9404 7.1273 5.0582 19 14 6.3217 8.3705 7.4556 20 1 6.1461 7.3106 8.4809 21 1 7.7174 8.8755 7.4997 22 1 5.3824 9.4869 7.7320 23 6 2.9169 7.3051 3.5633 24 6 2.6373 6.7555 2.1614 25 8 1.7261 2.0823 1.2473 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 4.0267 0.6523 0.4845 32 1 3.9191 1.4347 -1.1291 33 1 4.8874 2.8400 1.0154 34 1 3.8170 3.6444 -0.1783 35 1 4.6603 3.9990 2.4890 36 1 5.1830 5.5408 1.7633 37 1 5.8152 5.5238 4.1244 38 1 4.1480 5.1158 4.5982 39 1 4.9998 7.6599 3.1420 40 1 7.8410 7.0987 5.4175 41 1 2.6565 8.3629 3.5982 42 1 2.3197 6.7592 4.2937 43 1 3.1627 7.3589 1.4212 44 1 1.5655 6.7840 1.9650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334222908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -115.575993 kcal Electronic energy + Delta-G solvation = -23126.052613 eV Core-core repulsion = 19848.799563 eV Total energy + Delta-G solvation = -3277.253050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68862 -39.94018 -38.27969 -35.41219 -34.60782 -33.58033 -32.66373 -31.77997 -29.69779 -27.95482 -25.63220 -24.38520 -23.81853 -22.74682 -22.06418 -21.28349 -19.89961 -18.80170 -18.23908 -17.40827 -17.19469 -16.89569 -16.48600 -15.77122 -15.20518 -14.95399 -14.88553 -14.63593 -14.52022 -14.26266 -14.13212 -13.88594 -13.84384 -13.28599 -13.14818 -12.95196 -12.81774 -12.70838 -12.47987 -12.40954 -12.16150 -12.02901 -11.88271 -11.75389 -11.51877 -11.44606 -11.17458 -11.02193 -10.83721 -10.41713 -10.23534 -9.57868 -8.07938 -6.20410 1.41449 1.43921 1.52258 1.53121 1.93064 2.44483 2.83564 3.18720 3.36276 3.51463 3.73130 3.95540 4.04533 4.16066 4.22853 4.25070 4.32513 4.36377 4.46011 4.48663 4.54227 4.55857 4.70437 4.81549 4.83156 4.87717 4.95024 4.96773 5.01242 5.07966 5.14851 5.17178 5.23401 5.30211 5.41938 5.43630 5.53060 5.65189 5.97694 5.99807 6.13322 6.39625 6.47626 6.88019 7.14166 7.47010 8.95518 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.003783 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.577236 B = 7400.726651 C = 7732.050596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.063 3.937 4 H 0.058 0.942 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.066 3.934 8 H 0.116 0.884 9 C 0.494 3.506 10 O -0.584 6.584 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.118 4.118 14 C 0.047 3.953 15 C -0.536 4.536 16 H 0.044 0.956 17 C 0.020 3.980 18 N -0.909 5.909 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.281 1.281 22 H -0.275 1.275 23 C -0.114 4.114 24 C 0.116 3.884 25 O -0.375 6.375 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.007 0.993 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -13.790 -11.573 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.006 3.994 4 H 0.076 0.924 5 C -0.174 4.174 6 C -0.180 4.180 7 C 0.005 3.995 8 H 0.133 0.867 9 C 0.283 3.717 10 O -0.465 6.465 11 N -0.332 5.332 12 C -0.009 4.009 13 C -0.157 4.157 14 C 0.028 3.972 15 C -0.574 4.574 16 H 0.062 0.938 17 C -0.179 4.179 18 N -0.548 5.548 19 Si 0.773 3.227 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.152 4.152 24 C -0.006 4.006 25 O -0.294 6.294 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.440 -13.726 -11.617 18.309 hybrid contribution 0.199 1.031 1.216 1.606 sum -3.242 -12.696 -10.401 16.730 Atomic orbital electron populations 1.21729 0.96088 1.01942 1.01190 1.21667 0.96217 0.93421 1.03880 1.23361 0.95869 0.94431 0.85700 0.92407 1.23336 0.93756 0.96596 1.03757 1.23220 0.98614 0.99323 0.96853 1.22720 0.88609 0.86123 1.02008 0.86705 1.21632 0.85181 0.88548 0.76323 1.90616 1.19998 1.84563 1.51290 1.48276 1.13168 1.07425 1.64318 1.21995 0.80264 1.01645 0.97038 1.21750 1.02802 0.97255 0.93867 1.18599 0.90562 0.93121 0.94916 1.21530 0.94128 1.38604 1.03184 0.93763 1.25586 0.96187 0.95636 1.00485 1.69926 1.01035 1.45438 1.38425 0.85729 0.77291 0.78717 0.80922 1.20353 1.20697 1.19996 1.21854 0.98712 0.99812 0.94830 1.21574 0.99869 0.81509 0.97666 1.88542 1.42487 1.58167 1.40166 0.91192 0.94543 0.92987 0.90934 0.88064 0.88177 0.87324 0.86519 0.90648 0.88019 0.90754 0.89717 0.95572 0.97487 0.92842 0.91838 0.94337 0.90775 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.84 71.98 0.71 -2.14 16 2 C -0.11 -1.88 5.67 30.59 0.17 -1.70 16 3 C 0.06 1.34 3.41 31.26 0.11 1.45 16 4 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.14 -2.04 6.57 32.05 0.21 -1.83 16 6 C -0.14 -2.76 5.37 31.86 0.17 -2.59 16 7 C 0.07 1.84 3.07 30.32 0.09 1.93 16 8 H 0.12 2.94 7.48 -2.38 -0.02 2.92 16 9 C 0.49 17.79 6.97 87.66 0.61 18.41 16 10 O -0.58 -25.68 15.93 15.79 0.25 -25.43 16 11 N -0.60 -21.07 2.98 -819.82 -2.44 -23.51 16 12 C 0.11 3.67 5.68 86.22 0.49 4.16 16 13 C -0.12 -5.06 5.14 30.53 0.16 -4.91 16 14 C 0.05 2.21 2.07 -11.51 -0.02 2.19 16 15 C -0.54 -28.78 8.56 25.60 0.22 -28.56 16 16 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 17 C 0.02 1.08 5.30 84.65 0.45 1.53 16 18 N -0.91 -48.98 11.30 21.45 0.24 -48.74 16 19 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.11 -4.75 5.30 30.66 0.16 -4.59 16 24 C 0.12 4.30 6.43 86.35 0.56 4.85 16 25 O -0.37 -11.25 9.96 -130.16 -1.30 -12.55 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.87 7.95 -2.39 -0.02 0.85 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 1.77 6.96 -2.39 -0.02 1.76 16 34 H 0.07 1.58 7.85 -2.39 -0.02 1.56 16 35 H 0.10 2.63 4.47 -2.39 -0.01 2.62 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 4.03 6.03 -2.39 -0.01 4.01 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.07 2.81 7.01 -2.39 -0.02 2.80 16 Total: -1.00 -66.19 339.96 3.83 -62.36 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.96 Total: 15.21 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.08 Total: -11.82 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.20 Total: -72.25 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.04 Total: -37.98 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.19 3.83 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334222908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.215 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds