Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 H 1.09009 * 109.46881 * 54.99935 * 3 2 1 5 5 C 1.52997 * 109.47147 * 295.00579 * 3 2 1 6 6 C 1.53005 * 109.47141 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47150 * 59.99606 * 6 5 3 8 8 C 1.53002 * 109.47182 * 300.00006 * 7 6 5 9 9 C 1.52995 * 109.46877 * 60.00266 * 8 7 6 10 10 H 1.08998 * 109.47014 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47534 * 60.00013 * 9 8 7 12 12 O 1.21285 * 119.99644 * 295.61376 * 11 9 8 13 13 N 1.34767 * 120.00118 * 115.61013 * 11 9 8 14 14 C 1.47066 * 136.06005 * 4.63771 * 13 11 9 15 15 C 1.53241 * 88.08798 * 207.20004 * 14 13 11 16 16 O 1.42898 * 114.01421 * 87.71212 * 15 14 13 17 17 C 1.50694 * 114.32846 * 220.46911 * 15 14 13 18 18 H 1.08002 * 120.00009 * 99.32643 * 17 15 14 19 19 C 1.37875 * 119.99970 * 279.32483 * 17 15 14 20 20 N 1.31513 * 120.00081 * 5.31089 * 19 17 15 21 21 Si 1.86801 * 120.00046 * 185.30779 * 19 17 15 22 22 H 1.48490 * 109.47154 * 95.00019 * 21 19 17 23 23 H 1.48497 * 109.47105 * 215.00260 * 21 19 17 24 24 H 1.48510 * 109.46858 * 334.99690 * 21 19 17 25 25 C 1.47073 * 136.05702 * 185.00643 * 13 11 9 26 26 H 1.09002 * 109.46755 * 299.99455 * 1 2 3 27 27 H 1.08999 * 109.47023 * 59.99802 * 1 2 3 28 28 H 1.08995 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46970 * 239.99817 * 2 1 3 30 30 H 1.08994 * 109.47384 * 120.00503 * 2 1 3 31 31 H 1.09004 * 109.47396 * 299.99310 * 5 3 2 32 32 H 1.09005 * 109.47472 * 59.99558 * 5 3 2 33 33 H 1.09005 * 109.46406 * 299.99363 * 6 5 3 34 34 H 1.09005 * 109.47073 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.46999 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47142 * 60.00590 * 7 6 5 37 37 H 1.08999 * 109.46867 * 300.00175 * 8 7 6 38 38 H 1.08997 * 109.46961 * 180.02562 * 8 7 6 39 39 H 1.09000 * 113.46676 * 321.93699 * 14 13 11 40 40 H 1.08998 * 113.47073 * 92.37437 * 14 13 11 41 41 H 0.96699 * 113.99931 * 81.29860 * 16 15 14 42 42 H 0.97003 * 120.00203 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.46684 * 267.62218 * 25 13 11 44 44 H 1.09000 * 113.46678 * 38.00333 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3070 7 6 3.6696 3.5715 -1.1810 8 6 4.0744 2.8874 0.1263 9 6 3.5649 1.4448 0.1260 10 1 3.8529 0.9576 1.0575 11 6 4.1663 0.6999 -1.0379 12 8 3.9012 1.0334 -2.1734 13 7 4.9986 -0.3368 -0.8169 14 6 5.4823 -1.0742 0.3600 15 6 6.7510 -1.4056 -0.4330 16 8 7.7783 -0.4182 -0.3258 17 6 7.2519 -2.8141 -0.2427 18 1 7.0287 -3.5709 -0.9802 19 6 7.9951 -3.1365 0.8730 20 7 8.1787 -2.2441 1.8213 21 14 8.7411 -4.8412 1.0376 22 1 10.1425 -4.8176 0.5473 23 1 8.7225 -5.2540 2.4639 24 1 7.9510 -5.8071 0.2324 25 6 5.8279 -1.2243 -1.6460 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5876 -2.1492 32 1 0.5489 2.1253 -1.3968 33 1 1.7098 4.1079 -0.4651 34 1 1.8568 4.0565 -2.2386 35 1 4.0326 4.5994 -1.1804 36 1 4.1045 3.0329 -2.0228 37 1 3.6394 3.4262 0.9681 38 1 5.1606 2.8895 0.2163 39 1 5.6669 -0.4377 1.2254 40 1 4.8800 -1.9501 0.6012 41 1 8.3091 -0.4886 0.4794 42 1 8.7013 -2.4711 2.6064 43 1 5.3186 -2.1407 -1.9445 44 1 6.3050 -0.7154 -2.4835 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334255752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -74.027579 kcal Electronic energy + Delta-G solvation = -23747.582109 eV Core-core repulsion = 20472.130734 eV Total energy + Delta-G solvation = -3275.451375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39002 -38.63640 -36.30076 -34.01712 -33.75774 -32.28845 -31.14114 -28.97149 -28.34580 -25.46171 -25.09115 -23.75120 -22.67958 -20.70549 -20.52354 -19.56922 -17.92536 -17.24218 -16.34159 -15.43416 -15.29269 -15.09481 -14.58444 -14.33128 -14.17578 -13.85107 -13.64240 -13.14159 -12.96642 -12.65820 -12.45396 -12.37137 -11.94887 -11.85429 -11.74897 -11.63085 -11.28603 -11.25824 -11.08223 -10.98076 -10.85351 -10.58640 -10.53544 -10.46104 -10.28480 -9.83926 -9.74990 -9.36150 -8.91967 -8.71660 -8.32711 -7.77245 -6.39599 -4.48888 3.14706 3.23152 3.24564 3.27003 3.62734 4.19241 4.72446 4.81974 4.86994 4.94090 5.18577 5.27772 5.34230 5.37375 5.50207 5.55478 5.62649 5.69423 5.76340 5.79183 5.87192 5.90135 5.98079 6.03591 6.08165 6.13978 6.21631 6.25432 6.33996 6.40808 6.42023 6.47465 6.53780 6.55360 6.66798 6.68272 6.73386 6.87160 7.08380 7.61968 7.82983 8.54061 8.60274 8.87185 9.22121 9.30493 10.67562 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.004734 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.481048 B = 5912.782030 C = 6360.287928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.067 4.067 4 H 0.072 0.928 5 C -0.131 4.131 6 C -0.107 4.107 7 C -0.131 4.131 8 C -0.102 4.102 9 C -0.097 4.097 10 H 0.082 0.918 11 C 0.545 3.455 12 O -0.555 6.555 13 N -0.635 5.635 14 C 0.078 3.922 15 C 0.239 3.761 16 O -0.568 6.568 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.108 3.892 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.388 0.612 42 H 0.271 0.729 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 6.200 0.263 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.086 4.086 4 H 0.090 0.910 5 C -0.168 4.168 6 C -0.145 4.145 7 C -0.168 4.168 8 C -0.140 4.140 9 C -0.118 4.118 10 H 0.100 0.900 11 C 0.335 3.665 12 O -0.436 6.436 13 N -0.368 5.368 14 C -0.045 4.045 15 C 0.197 3.803 16 O -0.378 6.378 17 C -0.574 4.574 18 H 0.089 0.911 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.014 4.014 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.240 0.760 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.889 6.766 -0.750 12.842 hybrid contribution 0.633 -1.123 1.001 1.633 sum -10.256 5.643 0.251 11.709 Atomic orbital electron populations 1.21774 0.95889 1.01296 1.01600 1.21616 0.95866 0.96424 1.02285 1.21007 0.92541 0.96144 0.98887 0.90957 1.21930 0.99439 0.96247 0.99157 1.21380 0.95885 0.96723 1.00464 1.21725 0.96253 0.99692 0.99113 1.21361 1.00860 0.93294 0.98463 1.21225 0.96124 0.96770 0.97692 0.90003 1.19918 0.77066 0.79336 0.90139 1.90475 1.60939 1.67764 1.24453 1.49857 1.43510 1.29883 1.13561 1.24050 0.97035 0.93489 0.89935 1.19513 0.83851 0.87551 0.89372 1.86077 1.48542 1.55105 1.48062 1.21387 1.34720 0.94107 1.07166 0.91051 1.25056 0.94975 0.98152 0.94761 1.69620 1.39778 1.35110 1.08861 0.86370 0.79719 0.83266 0.77480 1.20307 1.20984 1.19545 1.23236 0.89645 0.91766 0.96767 0.92999 0.92542 0.93025 0.91868 0.92004 0.88373 0.92895 0.93198 0.92663 0.92969 0.89271 0.91535 0.91680 0.91803 0.90239 0.76010 0.91880 0.89874 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.12 -1.70 5.06 -26.73 -0.14 -1.83 16 3 C -0.07 -0.92 1.96 -90.62 -0.18 -1.10 16 4 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 5 C -0.13 -1.83 4.66 -26.73 -0.12 -1.95 16 6 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 7 C -0.13 -1.91 5.63 -26.73 -0.15 -2.06 16 8 C -0.10 -1.50 5.44 -26.73 -0.15 -1.64 16 9 C -0.10 -1.54 2.59 -91.77 -0.24 -1.78 16 10 H 0.08 1.30 7.28 -51.93 -0.38 0.92 16 11 C 0.54 10.62 5.58 -10.99 -0.06 10.56 16 12 O -0.56 -11.78 12.15 5.55 0.07 -11.72 16 13 N -0.64 -13.21 3.69 -185.36 -0.68 -13.90 16 14 C 0.08 1.66 7.43 -8.64 -0.06 1.60 16 15 C 0.24 5.64 1.42 -91.39 -0.13 5.51 16 16 O -0.57 -14.29 13.51 -35.23 -0.48 -14.76 16 17 C -0.54 -13.29 8.66 -34.44 -0.30 -13.58 16 18 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 19 C 0.07 1.81 5.35 -17.82 -0.10 1.72 16 20 N -0.89 -22.33 11.56 55.43 0.64 -21.69 16 21 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.11 2.35 8.04 -8.50 -0.07 2.28 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.00 7.40 -51.93 -0.38 0.62 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.67 5.36 -51.93 -0.28 1.39 16 32 H 0.05 0.65 6.57 -51.93 -0.34 0.31 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.58 5.67 -51.93 -0.29 1.29 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.37 7.89 -51.93 -0.41 0.96 16 40 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 41 H 0.39 9.74 7.02 45.56 0.32 10.06 16 42 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 43 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -26.23 336.69 -8.61 -34.84 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.72 Total: 13.03 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.49 Total: -5.14 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.04 Total: -35.59 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.41 Total: -26.48 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.23 -8.61 -34.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334255752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.184 kcal (2) G-P(sol) polarization free energy of solvation -26.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds