Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 H 1.08994 * 109.47102 * 305.00195 * 3 2 1 5 5 C 1.53004 * 109.46898 * 65.00236 * 3 2 1 6 6 C 1.53000 * 109.46855 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47212 * 300.00076 * 6 5 3 8 8 C 1.53003 * 109.46908 * 60.00266 * 7 6 5 9 9 C 1.52998 * 109.47011 * 299.99505 * 8 7 6 10 10 H 1.09001 * 109.47254 * 300.00741 * 9 8 7 11 11 C 1.50699 * 109.47190 * 180.02562 * 9 8 7 12 12 O 1.21276 * 120.00079 * 276.11426 * 11 9 8 13 13 N 1.34779 * 119.99613 * 96.11131 * 11 9 8 14 14 C 1.47588 * 134.49125 * 185.02974 * 13 11 9 15 15 C 1.53948 * 86.11385 * 155.36222 * 14 13 11 16 16 O 1.42900 * 113.73824 * 269.15406 * 15 14 13 17 17 C 1.50703 * 113.73773 * 137.95800 * 15 14 13 18 18 H 1.07997 * 120.00302 * 16.80404 * 17 15 14 19 19 C 1.37874 * 119.99475 * 196.53794 * 17 15 14 20 20 N 1.31512 * 120.00471 * 358.85468 * 19 17 15 21 21 Si 1.86798 * 119.99831 * 178.85486 * 19 17 15 22 22 H 1.48504 * 109.47203 * 94.98285 * 21 19 17 23 23 H 1.48502 * 109.47414 * 214.98442 * 21 19 17 24 24 H 1.48504 * 109.47374 * 334.98102 * 21 19 17 25 25 C 1.47813 * 134.45894 * 4.89997 * 13 11 9 26 26 H 1.09004 * 109.46657 * 299.99441 * 1 2 3 27 27 H 1.08993 * 109.47179 * 59.99621 * 1 2 3 28 28 H 1.09006 * 109.47324 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46604 * 240.00102 * 2 1 3 30 30 H 1.09001 * 109.46871 * 120.00367 * 2 1 3 31 31 H 1.08996 * 109.47046 * 299.99766 * 5 3 2 32 32 H 1.09009 * 109.46861 * 59.99950 * 5 3 2 33 33 H 1.08995 * 109.47238 * 60.00484 * 6 5 3 34 34 H 1.09002 * 109.47016 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47049 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46962 * 299.99767 * 7 6 5 37 37 H 1.09005 * 109.46519 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47055 * 59.99890 * 8 7 6 39 39 H 1.08996 * 113.76446 * 41.05590 * 14 13 11 40 40 H 1.08996 * 113.86870 * 269.67545 * 14 13 11 41 41 H 0.96702 * 114.00004 * 170.98787 * 16 15 14 42 42 H 0.96996 * 120.00530 * 180.02562 * 20 19 17 43 43 H 1.09002 * 113.76886 * 90.37705 * 25 13 11 44 44 H 1.08997 * 113.83850 * 318.91710 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1458 3.5688 1.3077 7 6 3.6707 3.5701 1.1822 8 6 4.0754 2.8861 -0.1253 9 6 3.5649 1.4438 -0.1255 10 1 3.9992 0.9045 0.7163 11 6 3.9640 0.7699 -1.4130 12 8 3.2826 0.9086 -2.4066 13 7 5.0782 0.0130 -1.4601 14 6 5.8029 -0.6951 -2.5333 15 6 7.0476 -0.5619 -1.6371 16 8 7.8069 0.6241 -1.8798 17 6 7.8982 -1.8051 -1.5916 18 1 7.7771 -2.5702 -2.3442 19 6 8.8348 -1.9632 -0.5923 20 7 9.0017 -1.0192 0.3080 21 14 9.8669 -3.5183 -0.5171 22 1 11.1615 -3.2871 -1.2071 23 1 10.1194 -3.8769 0.9017 24 1 9.1406 -4.6274 -1.1862 25 6 6.0660 -0.4389 -0.4577 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1252 1.3970 32 1 2.0700 1.5873 2.1492 33 1 1.7115 4.1081 0.4660 34 1 1.8579 4.0559 2.2393 35 1 4.0344 4.5976 1.1828 36 1 4.1050 3.0308 2.0240 37 1 5.1618 2.8866 -0.2144 38 1 3.6410 3.4254 -0.9670 39 1 5.8693 -0.1319 -3.4641 40 1 5.4762 -1.7244 -2.6813 41 1 8.5074 0.7820 -1.2321 42 1 9.6609 -1.1303 1.0109 43 1 5.8156 -1.3927 0.0069 44 1 6.3422 0.3284 0.2656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334255755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -87.702707 kcal Electronic energy + Delta-G solvation = -23483.472689 eV Core-core repulsion = 20207.428316 eV Total energy + Delta-G solvation = -3276.044373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07298 -38.50465 -36.75662 -33.93565 -33.75885 -32.36925 -31.13534 -29.01602 -28.27689 -25.43945 -25.20767 -23.82397 -22.89962 -20.59632 -20.21615 -19.52579 -18.14388 -17.30263 -16.29589 -15.76765 -15.12496 -14.77956 -14.73747 -14.41731 -14.19183 -13.91624 -13.70380 -13.23519 -13.03777 -12.92503 -12.49444 -12.37881 -12.06455 -11.88904 -11.60486 -11.47671 -11.42251 -11.19318 -11.07416 -11.02758 -10.94531 -10.71207 -10.52722 -10.34622 -10.31441 -10.18892 -9.87661 -9.40769 -9.04614 -8.77270 -8.38398 -7.78003 -6.36467 -4.46882 3.15374 3.23754 3.26030 3.28489 3.61882 4.20846 4.68198 4.73871 4.81362 4.89915 5.12277 5.18174 5.26723 5.35816 5.41770 5.49956 5.56125 5.57363 5.63667 5.71929 5.77442 5.83994 5.95560 6.05248 6.07501 6.08454 6.15853 6.19358 6.23144 6.26387 6.34990 6.37112 6.39362 6.47539 6.59474 6.60982 6.69676 6.75328 7.09848 7.62399 7.87812 8.55820 8.57588 8.85748 9.18614 9.27349 10.70457 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004655 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.675000 B = 6013.986432 C = 6280.345040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.068 4.068 4 H 0.080 0.920 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.093 4.093 10 H 0.083 0.917 11 C 0.535 3.465 12 O -0.567 6.567 13 N -0.635 5.635 14 C 0.114 3.886 15 C 0.235 3.765 16 O -0.570 6.570 17 C -0.539 4.539 18 H 0.069 0.931 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.092 3.908 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.382 0.618 42 H 0.270 0.730 43 H 0.080 0.920 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 4.968 5.186 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.087 4.087 4 H 0.098 0.902 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.115 4.115 10 H 0.102 0.898 11 C 0.325 3.675 12 O -0.447 6.447 13 N -0.369 5.369 14 C -0.009 4.009 15 C 0.195 3.805 16 O -0.378 6.378 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.130 4.130 20 N -0.531 5.531 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.031 4.031 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.448 5.251 4.333 13.319 hybrid contribution 1.074 -0.965 0.722 1.615 sum -10.374 4.286 5.055 12.310 Atomic orbital electron populations 1.21768 0.95966 1.01217 1.01552 1.21600 0.95873 0.96445 1.02152 1.21011 0.93027 0.96364 0.98279 0.90196 1.21643 1.00516 0.95611 0.97358 1.21555 0.95920 0.96830 1.01433 1.21521 0.95786 1.00407 0.97646 1.21415 1.01300 0.93475 0.98172 1.21235 0.96857 0.97118 0.96255 0.89819 1.20168 0.78568 0.78809 0.89975 1.90604 1.52246 1.64393 1.37492 1.50368 1.24215 1.48127 1.14155 1.23345 0.89089 0.95705 0.92715 1.19916 0.87206 0.84785 0.88635 1.86130 1.50656 1.44795 1.56233 1.21438 1.20377 1.03498 1.12378 0.91271 1.25040 0.96263 0.96979 0.94702 1.69755 1.34723 1.33305 1.15365 0.86403 0.80412 0.82766 0.77453 1.20398 1.20970 1.19567 1.24103 0.85951 0.98100 0.94913 0.92785 0.92787 0.93122 0.91583 0.92299 0.91673 0.91985 0.92018 0.92212 0.91861 0.91803 0.91191 0.91496 0.91439 0.89696 0.76820 0.92064 0.90153 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 37.16 0.36 -1.34 16 2 C -0.12 -1.71 5.23 -26.73 -0.14 -1.85 16 3 C -0.07 -0.95 1.41 -90.62 -0.13 -1.08 16 4 H 0.08 1.23 7.86 -51.93 -0.41 0.83 16 5 C -0.11 -1.27 4.96 -26.73 -0.13 -1.40 16 6 C -0.12 -1.27 5.92 -26.73 -0.16 -1.42 16 7 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 8 C -0.11 -1.56 5.19 -26.73 -0.14 -1.70 16 9 C -0.09 -1.50 1.96 -91.77 -0.18 -1.68 16 10 H 0.08 1.33 7.64 -51.93 -0.40 0.93 16 11 C 0.54 10.84 5.89 -10.99 -0.06 10.78 16 12 O -0.57 -12.98 16.58 5.56 0.09 -12.89 16 13 N -0.64 -13.49 3.61 -178.10 -0.64 -14.13 16 14 C 0.11 2.50 8.23 -2.96 -0.02 2.48 16 15 C 0.24 5.56 1.25 -90.85 -0.11 5.45 16 16 O -0.57 -14.08 13.47 -35.23 -0.47 -14.55 16 17 C -0.54 -13.44 8.59 -34.44 -0.30 -13.74 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.81 5.37 -17.82 -0.10 1.72 16 20 N -0.89 -22.18 11.77 55.43 0.65 -21.53 16 21 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 C 0.09 1.98 7.18 -2.84 -0.02 1.96 16 26 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.10 6.73 -51.93 -0.35 0.75 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 41 H 0.38 9.28 7.84 45.56 0.36 9.64 16 42 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 43 H 0.08 1.72 8.09 -51.93 -0.42 1.30 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -27.19 346.27 -8.40 -35.59 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.94 Total: 11.31 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.29 Total: -3.36 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.01 Total: -35.66 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.38 Total: -27.44 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.19 -8.40 -35.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334255755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.113 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds