Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47421 * 2 1 4 4 H 1.09000 * 109.47004 * 54.99389 * 3 2 1 5 5 C 1.53006 * 109.46722 * 294.99924 * 3 2 1 6 6 C 1.53003 * 109.46784 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47173 * 60.00266 * 6 5 3 8 8 C 1.53002 * 109.47041 * 299.99945 * 7 6 5 9 9 C 1.52996 * 109.47317 * 59.99826 * 8 7 6 10 10 H 1.09004 * 109.47546 * 60.00054 * 9 8 7 11 11 C 1.50699 * 109.47478 * 180.02562 * 9 8 7 12 12 O 1.21279 * 119.99920 * 84.14509 * 11 9 8 13 13 N 1.34777 * 120.00178 * 264.14763 * 11 9 8 14 14 C 1.47062 * 136.05920 * 184.62315 * 13 11 9 15 15 C 1.53759 * 87.88592 * 152.96542 * 14 13 11 16 16 O 1.42897 * 114.57635 * 272.66547 * 15 14 13 17 17 C 1.50704 * 114.08091 * 139.78442 * 15 14 13 18 18 H 1.08004 * 119.99504 * 266.56109 * 17 15 14 19 19 C 1.37871 * 120.00136 * 86.56596 * 17 15 14 20 20 N 1.31508 * 120.00286 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99919 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46790 * 119.99940 * 21 19 17 24 24 H 1.48496 * 109.47211 * 239.99666 * 21 19 17 25 25 C 1.47067 * 136.05610 * 5.00218 * 13 11 9 26 26 H 1.09006 * 109.47087 * 300.00269 * 1 2 3 27 27 H 1.09001 * 109.47124 * 59.99740 * 1 2 3 28 28 H 1.08996 * 109.47680 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47294 * 239.99851 * 2 1 3 30 30 H 1.09004 * 109.47108 * 119.99729 * 2 1 3 31 31 H 1.08995 * 109.47039 * 299.99978 * 5 3 2 32 32 H 1.09004 * 109.46837 * 59.99910 * 5 3 2 33 33 H 1.09001 * 109.46982 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46915 * 300.00080 * 6 5 3 35 35 H 1.08995 * 109.47089 * 59.99404 * 7 6 5 36 36 H 1.08991 * 109.47303 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47160 * 300.00255 * 8 7 6 38 38 H 1.08994 * 109.47001 * 179.97438 * 8 7 6 39 39 H 1.09000 * 113.47312 * 267.70291 * 14 13 11 40 40 H 1.09001 * 113.46438 * 38.14437 * 14 13 11 41 41 H 0.96701 * 114.00040 * 273.67461 * 16 15 14 42 42 H 0.96997 * 120.00660 * 180.02562 * 20 19 17 43 43 H 1.08999 * 113.46593 * 321.86814 * 25 13 11 44 44 H 1.08996 * 113.46691 * 92.24313 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.1448 3.5692 -1.3072 7 6 3.6696 3.5716 -1.1812 8 6 4.0743 2.8875 0.1262 9 6 3.5648 1.4449 0.1260 10 1 3.9997 0.9060 -0.7158 11 6 3.9629 0.7713 1.4139 12 8 3.2778 0.9058 2.4056 13 7 5.0803 0.0193 1.4638 14 6 5.7379 -0.8352 2.4638 15 6 6.3525 -1.6282 1.2987 16 8 5.5346 -2.6917 0.8068 17 6 7.7871 -2.0334 1.5198 18 1 8.5875 -1.4058 1.1565 19 6 8.0778 -3.2052 2.1856 20 7 7.1031 -3.9691 2.6283 21 14 9.8561 -3.7077 2.4590 22 1 10.7559 -2.6840 1.8695 23 1 10.1206 -3.8187 3.9160 24 1 10.1052 -5.0196 1.8094 25 6 6.1821 -0.3024 0.5443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5875 -2.1492 32 1 0.5489 2.1252 -1.3970 33 1 1.8560 4.0567 -2.2384 34 1 1.7098 4.1080 -0.4654 35 1 4.1045 3.0327 -2.0229 36 1 4.0325 4.5993 -1.1806 37 1 3.6393 3.4263 0.9680 38 1 5.1606 2.8888 0.2157 39 1 6.4766 -0.3076 3.0673 40 1 5.0388 -1.4163 3.0652 41 1 5.6443 -3.5254 1.2842 42 1 7.3075 -4.7933 3.0970 43 1 5.8614 -0.4294 -0.4897 44 1 7.0374 0.3662 0.6410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334255761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = -82.293748 kcal Electronic energy + Delta-G solvation = -23412.407414 eV Core-core repulsion = 20136.597591 eV Total energy + Delta-G solvation = -3275.809823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11717 -38.60245 -36.77819 -34.03546 -33.79153 -32.18090 -31.17828 -29.02755 -28.39560 -25.49098 -25.09204 -23.80132 -22.91386 -20.58797 -20.28416 -19.53871 -18.19500 -17.40478 -16.34042 -15.67466 -15.16554 -14.75377 -14.72752 -14.41961 -14.20581 -13.97168 -13.63270 -13.20917 -13.03834 -12.89464 -12.74777 -12.35362 -11.99974 -11.93193 -11.56016 -11.46578 -11.43433 -11.22709 -11.09655 -11.02218 -10.86587 -10.72410 -10.47153 -10.33644 -10.24024 -10.16651 -9.91513 -9.62678 -8.96974 -8.72916 -8.36116 -7.79613 -6.39023 -4.49785 3.13780 3.22970 3.25493 3.27224 3.62433 4.18264 4.65348 4.70720 4.78231 4.84526 5.10964 5.15822 5.24940 5.36834 5.40400 5.49790 5.51355 5.55251 5.61458 5.73254 5.75292 5.83053 5.96657 6.02322 6.05592 6.07602 6.12472 6.17685 6.21143 6.27341 6.30473 6.34775 6.37032 6.46865 6.56883 6.63500 6.78029 6.82731 7.12695 7.63842 7.80699 8.52536 8.59095 8.86504 9.21587 9.48992 10.67696 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027011 B = 0.004406 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.358404 B = 6353.471810 C = 6837.161880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.067 4.067 4 H 0.079 0.921 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.106 4.106 9 C -0.095 4.095 10 H 0.085 0.915 11 C 0.541 3.459 12 O -0.563 6.563 13 N -0.635 5.635 14 C 0.078 3.922 15 C 0.240 3.760 16 O -0.572 6.572 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.101 3.899 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.395 0.605 42 H 0.273 0.727 43 H 0.065 0.935 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 10.286 -7.595 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.086 4.086 4 H 0.097 0.903 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.144 4.144 9 C -0.116 4.116 10 H 0.103 0.897 11 C 0.331 3.669 12 O -0.443 6.443 13 N -0.368 5.368 14 C -0.045 4.045 15 C 0.198 3.802 16 O -0.385 6.385 17 C -0.573 4.573 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.022 4.022 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.424 10.750 -7.394 15.012 hybrid contribution 1.171 -0.768 0.698 1.565 sum -6.252 9.982 -6.696 13.549 Atomic orbital electron populations 1.21761 0.96034 1.01298 1.01361 1.21591 0.95772 0.96151 1.02567 1.21002 0.92832 0.96613 0.98166 0.90253 1.21649 1.00652 0.95427 0.97438 1.21554 0.95752 0.96971 1.01477 1.21517 0.96036 1.00269 0.97518 1.21430 1.00749 0.93782 0.98408 1.21266 0.97283 0.96710 0.96344 0.89675 1.20002 0.79694 0.77409 0.89806 1.90619 1.53496 1.62695 1.37472 1.49816 1.20876 1.46220 1.19859 1.24174 0.94141 0.90607 0.95576 1.19571 0.89045 0.83825 0.87711 1.86004 1.66209 1.24295 1.61991 1.21471 0.91257 1.07278 1.37263 0.90918 1.25084 0.98516 0.95746 0.93736 1.69273 1.31947 1.14169 1.38342 0.86271 0.83467 0.78658 0.78075 1.19414 1.20664 1.20612 1.23362 0.87335 0.96698 0.94801 0.92879 0.92894 0.93026 0.92188 0.91328 0.91949 0.91596 0.92181 0.92002 0.91800 0.91907 0.91388 0.91691 0.90541 0.91987 0.74883 0.91609 0.91697 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 37.15 0.36 -1.48 16 2 C -0.12 -1.86 5.23 -26.73 -0.14 -2.00 16 3 C -0.07 -0.95 1.41 -90.61 -0.13 -1.08 16 4 H 0.08 1.23 7.86 -51.93 -0.41 0.83 16 5 C -0.11 -1.26 4.96 -26.73 -0.13 -1.40 16 6 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 7 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 8 C -0.11 -1.41 5.19 -26.73 -0.14 -1.54 16 9 C -0.09 -1.48 1.96 -91.77 -0.18 -1.66 16 10 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 11 C 0.54 11.03 5.92 -10.99 -0.07 10.96 16 12 O -0.56 -13.18 16.60 5.56 0.09 -13.09 16 13 N -0.63 -13.57 3.69 -185.07 -0.68 -14.25 16 14 C 0.08 1.82 8.05 -8.38 -0.07 1.75 16 15 C 0.24 5.77 1.59 -91.12 -0.14 5.62 16 16 O -0.57 -14.74 13.55 -35.23 -0.48 -15.22 16 17 C -0.53 -13.33 8.68 -34.44 -0.30 -13.63 16 18 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 19 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 20 N -0.90 -23.16 11.01 55.43 0.61 -22.55 16 21 Si 0.91 19.43 29.54 -169.99 -5.02 14.41 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.10 2.04 7.66 -8.52 -0.07 1.98 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 40 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.39 10.44 6.33 45.56 0.29 10.73 16 42 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.06 1.23 7.83 -51.93 -0.41 0.82 16 44 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -27.99 344.58 -8.69 -36.67 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.99 Total: 12.33 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.41 Total: -3.51 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.07 Total: -36.80 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.39 Total: -28.30 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.99 -8.69 -36.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334255761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.620 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds