Wall clock time and date at job start Tue Mar 31 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.87003 * 2 1 4 4 C 1.54095 * 109.88165 * 121.00717 * 2 1 3 5 5 C 1.54811 * 104.19040 * 121.45658 * 4 2 1 6 6 H 1.09001 * 110.90350 * 262.68456 * 5 4 2 7 7 C 1.50694 * 110.90951 * 139.11555 * 5 4 2 8 8 O 1.21282 * 120.00222 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99772 * 180.02562 * 7 5 4 10 10 C 1.46929 * 120.63127 * 359.71529 * 9 7 5 11 11 C 1.53626 * 108.53839 * 126.37162 * 10 9 7 12 12 C 1.53042 * 109.24367 * 54.85765 * 11 10 9 13 13 C 1.52998 * 109.45771 * 178.48694 * 12 11 10 14 14 C 1.50700 * 109.47403 * 295.06784 * 13 12 11 15 15 H 1.07996 * 119.99554 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00178 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99853 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00158 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46915 * 59.99704 * 18 16 14 20 20 H 1.48500 * 109.46993 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47144 * 299.99647 * 18 16 14 22 22 C 1.53042 * 109.53878 * 298.50897 * 12 11 10 23 23 C 1.46925 * 120.62689 * 180.02562 * 9 7 5 24 24 C 1.54994 * 102.09091 * 20.87946 * 5 4 2 25 25 O 1.43751 * 109.88000 * 238.99574 * 2 1 3 26 26 H 1.09002 * 109.47153 * 299.29801 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29992 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29973 * 1 2 3 29 29 H 1.09000 * 110.48854 * 240.12888 * 4 2 1 30 30 H 1.08997 * 110.48974 * 2.64484 * 4 2 1 31 31 H 1.08997 * 109.58605 * 246.20271 * 10 9 7 32 32 H 1.08997 * 109.58609 * 6.63305 * 10 9 7 33 33 H 1.08999 * 109.63383 * 294.86304 * 11 10 9 34 34 H 1.09002 * 109.42666 * 174.72274 * 11 10 9 35 35 H 1.09002 * 109.46175 * 58.53151 * 12 11 10 36 36 H 1.08991 * 109.47369 * 55.07053 * 13 12 11 37 37 H 1.09008 * 109.47103 * 175.06924 * 13 12 11 38 38 H 0.97006 * 119.99635 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.49660 * 301.41564 * 22 12 11 40 40 H 1.08993 * 109.52247 * 181.33021 * 22 12 11 41 41 H 1.08996 * 109.59361 * 353.36783 * 23 9 7 42 42 H 1.09000 * 109.59060 * 113.65597 * 23 9 7 43 43 H 1.08992 * 110.62019 * 81.48298 * 24 5 4 44 44 H 1.09000 * 110.61620 * 204.32400 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 1.2420 5 6 2.9196 -1.8905 0.6601 6 1 2.3540 -2.8211 0.6136 7 6 4.1823 -2.0710 1.4625 8 8 4.3983 -1.3606 2.4215 9 7 5.0722 -3.0214 1.1138 10 6 4.8222 -3.8930 -0.0422 11 6 6.0359 -3.8191 -0.9812 12 6 7.3030 -4.1652 -0.1959 13 6 8.5103 -4.1299 -1.1351 14 6 8.3726 -5.2154 -2.1713 15 1 7.5104 -5.8657 -2.1607 16 6 9.3478 -5.3790 -3.1321 17 7 10.3979 -4.5873 -3.1446 18 14 9.1774 -6.7250 -4.4161 19 1 7.9348 -6.5073 -5.1995 20 1 10.3492 -6.6905 -5.3277 21 1 9.1127 -8.0466 -3.7422 22 6 7.5022 -3.1469 0.9291 23 6 6.3075 -3.2098 1.8867 24 6 3.2380 -1.3651 -0.7629 25 8 2.0188 -0.6963 -1.1587 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8837 29 1 2.6620 -0.0834 1.8574 30 1 1.2246 -1.1504 1.8226 31 1 4.6815 -4.9191 0.2975 32 1 3.9299 -3.5546 -0.5688 33 1 6.1236 -2.8116 -1.3877 34 1 5.9074 -4.5310 -1.7965 35 1 7.2044 -5.1633 0.2310 36 1 8.5578 -3.1597 -1.6294 37 1 9.4226 -4.2899 -0.5603 38 1 11.0838 -4.7022 -3.8209 39 1 7.5761 -2.1457 0.5046 40 1 8.4173 -3.3798 1.4734 41 1 6.3956 -2.4205 2.6332 42 1 6.2841 -4.1803 2.3822 43 1 4.0685 -0.6598 -0.7348 44 1 3.4612 -2.1925 -1.4365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335385709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:29 Heat of formation + Delta-G solvation = -102.163549 kcal Electronic energy + Delta-G solvation = -22964.097982 eV Core-core repulsion = 19687.426540 eV Total energy + Delta-G solvation = -3276.671443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.73085 -38.98448 -37.33413 -34.12025 -32.70111 -32.37344 -31.79292 -30.49724 -28.11260 -26.22097 -24.97655 -23.30928 -22.86308 -21.75633 -21.08862 -19.77967 -18.62966 -17.61842 -16.43095 -16.31804 -15.84081 -15.59576 -15.10367 -14.87764 -14.56207 -13.85201 -13.80102 -13.68757 -13.15534 -13.04741 -12.89742 -12.66824 -12.53238 -12.25165 -12.10279 -11.81584 -11.45928 -11.23761 -11.09709 -11.04128 -10.94636 -10.82370 -10.71618 -10.48489 -10.18145 -9.89467 -9.81892 -9.63399 -9.30976 -9.02067 -8.43588 -8.37764 -6.02787 -4.05307 2.57605 2.99577 3.30044 3.35608 3.36781 3.66795 4.18716 4.42534 4.50382 4.52468 4.77050 4.91083 4.96046 5.02680 5.14465 5.31151 5.33926 5.39297 5.42470 5.44799 5.47029 5.50790 5.62056 5.69930 5.74532 5.77853 5.82981 5.93540 5.94878 6.01847 6.30888 6.32778 6.46280 6.60907 6.67510 6.90148 6.93436 7.05696 7.47405 7.62911 7.77194 7.96388 8.16563 8.38283 9.00993 9.58801 11.08375 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.003923 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.804033 B = 7135.963945 C = 7927.952039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.070 0.930 4 C -0.137 4.137 5 C -0.144 4.144 6 H 0.109 0.891 7 C 0.523 3.477 8 O -0.548 6.548 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.111 3.889 24 C 0.058 3.942 25 O -0.370 6.370 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.860 5.508 7.694 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.088 0.912 4 C -0.175 4.175 5 C -0.166 4.166 6 H 0.127 0.873 7 C 0.311 3.689 8 O -0.426 6.426 9 N -0.334 5.334 10 C -0.028 4.028 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.010 4.010 24 C -0.019 4.019 25 O -0.289 6.289 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.669 5.914 7.897 19.370 hybrid contribution 0.218 -0.894 -0.644 1.124 sum -16.451 5.020 7.253 18.666 Atomic orbital electron populations 1.21935 0.93664 1.02811 1.02341 1.22783 0.95170 0.96050 0.84795 0.91245 1.22963 0.99611 0.96869 0.98066 1.22843 0.95445 1.01569 0.96747 0.87278 1.20178 0.84395 0.79746 0.84612 1.90652 1.77308 1.45566 1.29085 1.48161 1.20624 1.34198 1.30412 1.22232 0.99758 0.94063 0.86705 1.21998 0.93286 1.02643 0.97815 1.21192 0.96865 0.96767 0.95104 1.19116 0.91425 0.97127 0.93236 1.21189 1.06085 1.15871 1.12512 0.92643 1.25019 0.95388 0.96156 0.97848 1.69955 1.10071 1.38294 1.35106 0.86705 0.77518 0.82492 0.81559 1.20240 1.21359 1.20300 1.22032 0.96530 1.00829 0.97330 1.21703 0.83267 1.01757 0.94321 1.23692 0.88153 0.97062 0.92949 1.88950 1.39542 1.67487 1.32928 0.91269 0.91866 0.91905 0.88659 0.90018 0.91257 0.90110 0.92141 0.89544 0.92304 0.96623 0.96596 0.92957 0.92062 0.91065 0.89677 0.91738 0.91399 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.36 37.16 0.35 -0.85 16 2 C 0.07 0.70 4.05 -26.16 -0.11 0.60 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.43 6.06 -25.20 -0.15 -1.58 16 5 C -0.14 -1.62 2.49 -89.77 -0.22 -1.84 16 6 H 0.11 1.05 7.79 -51.93 -0.40 0.65 16 7 C 0.52 7.40 7.07 -10.99 -0.08 7.32 16 8 O -0.55 -9.36 14.87 5.56 0.08 -9.27 16 9 N -0.60 -8.36 2.97 -172.48 -0.51 -8.87 16 10 C 0.09 1.20 6.04 -3.48 -0.02 1.18 16 11 C -0.12 -1.94 5.21 -26.38 -0.14 -2.08 16 12 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.76 8.39 -34.44 -0.29 -14.05 16 15 H 0.06 1.41 7.06 -52.49 -0.37 1.04 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.13 -2.10 5.36 -26.59 -0.14 -2.25 16 23 C 0.11 1.61 6.43 -3.69 -0.02 1.59 16 24 C 0.06 0.67 6.47 38.21 0.25 0.92 16 25 O -0.37 -4.53 11.20 -35.23 -0.39 -4.92 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.13 6.86 -51.93 -0.36 0.78 16 30 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.85 4.02 -51.93 -0.21 0.64 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.27 7.00 -51.93 -0.36 0.91 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 44 H 0.11 1.13 6.26 -51.93 -0.32 0.81 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -30.76 339.76 -8.39 -39.15 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.41 Total: -0.92 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.99 Total: -10.69 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.22 Total: -34.43 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.31 Total: -14.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.76 -8.39 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.009 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds