Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.33084 * 2 1 4 4 C 1.54479 * 110.46906 * 237.68023 * 2 1 3 5 5 C 1.54504 * 104.06367 * 217.14353 * 4 2 1 6 6 H 1.09003 * 110.62879 * 118.70706 * 5 4 2 7 7 C 1.50703 * 110.51280 * 241.35830 * 5 4 2 8 8 O 1.21282 * 120.00080 * 29.44387 * 7 5 4 9 9 N 1.34776 * 120.00236 * 209.45023 * 7 5 4 10 10 C 1.46925 * 120.63459 * 174.68304 * 9 7 5 11 11 C 1.53195 * 108.77384 * 126.40768 * 10 9 7 12 12 C 1.53036 * 109.31209 * 54.64303 * 11 10 9 13 13 C 1.52999 * 109.46030 * 178.62574 * 12 11 10 14 14 C 1.50692 * 109.47208 * 185.02042 * 13 12 11 15 15 H 1.08004 * 120.00413 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00187 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99823 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47233 * 90.00438 * 18 16 14 20 20 H 1.48503 * 109.46772 * 210.00205 * 18 16 14 21 21 H 1.48497 * 109.47552 * 330.00158 * 18 16 14 22 22 C 1.53050 * 109.52443 * 298.63316 * 12 11 10 23 23 C 1.46927 * 120.62704 * 354.70146 * 9 7 5 24 24 C 1.54482 * 104.06388 * 0.02562 * 5 4 2 25 25 O 1.44419 * 104.80239 * 23.97886 * 24 5 4 26 26 H 1.08994 * 109.47139 * 299.20445 * 1 2 3 27 27 H 1.09000 * 109.46645 * 59.20985 * 1 2 3 28 28 H 1.08998 * 109.46833 * 179.20171 * 1 2 3 29 29 H 1.09005 * 110.50682 * 98.50129 * 4 2 1 30 30 H 1.08999 * 110.50908 * 335.79373 * 4 2 1 31 31 H 1.09007 * 109.58380 * 6.62453 * 10 9 7 32 32 H 1.08996 * 109.70456 * 246.27008 * 10 9 7 33 33 H 1.08999 * 109.50004 * 294.68206 * 11 10 9 34 34 H 1.09005 * 109.52049 * 174.60686 * 11 10 9 35 35 H 1.08995 * 109.46414 * 58.64953 * 12 11 10 36 36 H 1.08994 * 109.47194 * 305.02512 * 13 12 11 37 37 H 1.09002 * 109.47120 * 65.02482 * 13 12 11 38 38 H 0.96999 * 120.00076 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.49764 * 181.31212 * 22 12 11 40 40 H 1.08992 * 109.49896 * 301.41210 * 22 12 11 41 41 H 1.08993 * 109.58973 * 353.37682 * 23 9 7 42 42 H 1.08999 * 109.58462 * 113.66506 * 23 9 7 43 43 H 1.09004 * 110.36702 * 142.80762 * 24 5 4 44 44 H 1.08993 * 110.37124 * 265.03225 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7738 -1.2230 5 6 3.3208 -1.5032 -0.6834 6 1 3.2028 -2.5833 -0.7704 7 6 4.5557 -1.0476 -1.4172 8 8 4.6111 0.0754 -1.8721 9 7 5.5985 -1.8879 -1.5682 10 6 6.7608 -1.5006 -2.3792 11 6 8.0286 -1.6697 -1.5361 12 6 8.0890 -3.0996 -0.9940 13 6 9.3713 -3.2823 -0.1796 14 6 9.4924 -4.7214 0.2507 15 1 8.7307 -5.4344 -0.0284 16 6 10.5756 -5.1279 1.0006 17 7 11.5028 -4.2596 1.3409 18 14 10.7260 -6.9120 1.5334 19 1 11.4698 -7.6762 0.5000 20 1 11.4574 -6.9833 2.8238 21 1 9.3704 -7.4950 1.6999 22 6 6.8751 -3.3588 -0.0986 23 6 5.5943 -3.2090 -0.9252 24 6 3.3879 -1.0844 0.8021 25 8 2.0323 -0.7232 1.1452 26 1 -0.3633 0.5014 0.8970 27 1 -0.3632 0.5261 -0.8828 28 1 -0.3633 -1.0276 -0.0143 29 1 2.3452 -0.0835 -2.0206 30 1 1.3314 -1.4929 -1.5768 31 1 6.6619 -0.4592 -2.6855 32 1 6.8214 -2.1370 -3.2620 33 1 8.0090 -0.9657 -0.7042 34 1 8.9056 -1.4778 -2.1544 35 1 8.0837 -3.8039 -1.8258 36 1 10.2319 -3.0123 -0.7915 37 1 9.3366 -2.6414 0.7014 38 1 12.2647 -4.5455 1.8689 39 1 6.9306 -4.3694 0.3059 40 1 6.8663 -2.6389 0.7197 41 1 4.7259 -3.2949 -0.2722 42 1 5.5563 -3.9866 -1.6881 43 1 3.7253 -1.9190 1.4166 44 1 4.0529 -0.2298 0.9257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335385710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = -103.803169 kcal Electronic energy + Delta-G solvation = -22824.079418 eV Core-core repulsion = 19547.336876 eV Total energy + Delta-G solvation = -3276.742542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71810 -38.99473 -37.28526 -34.09767 -32.69990 -32.31554 -31.78936 -30.58410 -28.10642 -26.28930 -24.94259 -23.37931 -22.76445 -21.76407 -21.15903 -19.71344 -18.63596 -17.61444 -16.45262 -16.30191 -15.87627 -15.44387 -15.25791 -14.82825 -14.56612 -13.95192 -13.80299 -13.44476 -13.26746 -13.08718 -12.87447 -12.65504 -12.49857 -12.23764 -12.10275 -11.81430 -11.57623 -11.24950 -11.08337 -11.02003 -10.96517 -10.83866 -10.72733 -10.49228 -10.16809 -9.98155 -9.82474 -9.60699 -9.30852 -9.01235 -8.43184 -8.38301 -6.03289 -4.05686 2.55006 3.01706 3.28455 3.35567 3.37185 3.68186 4.29616 4.42066 4.44182 4.50618 4.78121 4.90490 4.99300 5.06208 5.17743 5.31106 5.32827 5.38449 5.42762 5.42779 5.47230 5.53817 5.62238 5.66978 5.72627 5.75992 5.78616 5.89556 5.93363 6.01307 6.31640 6.33187 6.46549 6.59881 6.62519 6.90470 6.93693 7.05872 7.48096 7.62915 7.77147 7.96083 8.17281 8.38043 9.00853 9.58406 11.07949 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.003623 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.850654 B = 7726.654110 C = 8320.459133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.135 4.135 5 C -0.147 4.147 6 H 0.105 0.895 7 C 0.522 3.478 8 O -0.548 6.548 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.129 4.129 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.119 4.119 23 C 0.100 3.900 24 C 0.063 3.937 25 O -0.369 6.369 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 5.296 -4.952 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.090 0.910 4 C -0.173 4.173 5 C -0.169 4.169 6 H 0.124 0.876 7 C 0.309 3.691 8 O -0.426 6.426 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.168 4.168 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.157 4.157 23 C -0.022 4.022 24 C -0.014 4.014 25 O -0.288 6.288 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.523 5.852 -4.900 20.034 hybrid contribution 0.528 -1.126 0.187 1.258 sum -17.995 4.726 -4.713 19.193 Atomic orbital electron populations 1.21801 0.93096 1.02879 1.02500 1.23029 0.95228 0.95855 0.84650 0.90994 1.22976 0.95254 0.99816 0.99303 1.22755 0.94129 1.02863 0.97142 0.87640 1.20266 0.84084 0.84896 0.79809 1.90655 1.81829 1.19521 1.50598 1.48186 1.18151 1.17100 1.50012 1.21689 0.84851 1.01331 0.93229 1.22026 0.95913 0.99248 0.99563 1.21193 0.97175 0.93553 0.98000 1.19119 0.90538 0.96757 0.94519 1.21227 1.06727 0.94708 1.32905 0.92598 1.25026 0.95942 0.97269 0.96223 1.69961 1.11171 1.33982 1.38308 0.86642 0.78148 0.85438 0.78049 1.20743 1.21294 1.19882 1.21905 0.92566 1.03400 0.97833 1.22017 1.00138 0.83304 0.96766 1.23265 0.85107 1.00827 0.92207 1.89142 1.26603 1.74575 1.38462 0.91794 0.91098 0.91768 0.88897 0.90156 0.89680 0.91724 0.92063 0.91091 0.92317 0.96593 0.96629 0.93010 0.89536 0.92202 0.90395 0.91362 0.88038 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.53 37.16 0.35 -0.80 16 2 C 0.07 0.72 3.92 -25.95 -0.10 0.62 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.14 -1.39 6.14 -25.17 -0.15 -1.54 16 5 C -0.15 -1.65 2.58 -90.20 -0.23 -1.88 16 6 H 0.11 1.00 6.40 -51.93 -0.33 0.67 16 7 C 0.52 7.40 6.66 -10.98 -0.07 7.33 16 8 O -0.55 -9.38 15.18 5.56 0.08 -9.30 16 9 N -0.60 -8.43 2.97 -172.78 -0.51 -8.94 16 10 C 0.11 1.61 6.44 -3.71 -0.02 1.59 16 11 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 12 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 13 C 0.03 0.67 4.45 -27.89 -0.12 0.55 16 14 C -0.52 -13.76 8.39 -34.44 -0.29 -14.05 16 15 H 0.06 1.42 7.06 -52.48 -0.37 1.05 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.12 -1.95 5.19 -26.62 -0.14 -2.09 16 23 C 0.10 1.28 6.16 -3.72 -0.02 1.26 16 24 C 0.06 0.73 7.10 37.94 0.27 1.00 16 25 O -0.37 -4.53 11.34 -35.23 -0.40 -4.93 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.09 1.06 6.92 -51.93 -0.36 0.70 16 30 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 31 H 0.08 1.28 7.00 -51.93 -0.36 0.91 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.51 6.91 -51.93 -0.36 1.15 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.82 5.61 -51.93 -0.29 0.53 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.03 8.13 -51.93 -0.42 0.61 16 44 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -30.93 342.86 -8.43 -39.37 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.52 Total: -1.22 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.97 Total: -10.51 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.22 Total: -34.54 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.32 Total: -14.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.93 -8.43 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.438 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds